CsaV3_5G034100 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G034100
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 27190517 .. 27190859 (-)
RNA-Seq Expression	CsaV3_5G034100
Synteny	CsaV3_5G034100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCCAAATGTAATGCATGGACACCAACAAGTCAAGCAACCTATAAAATAATAGAGATTATATGATACAAATTGTAGAAAATTAGGTGTAGTTGAAAATCAAGCCAGAAATTATATGAACTTAACAGATACTAATGTCGTTGCAACAGTGGCAGAGACCGGTGGACCAACCAACTGTGGAGTGGGGTTTTGGTTCACATGGATTTTGGGGGAAATTGGCCGGCGTCGCCATGAGGGTGTGTTTGAAACTGACGGGAAAAGAGGTGGGTGAGGGTGGCAGAGATGGCGGTTGCAGTGGTGCCGACGGCAGTGAAGAGAATGTGGCGTCTTGGTGGGAATAA

mRNA sequence

ATGCGTCCAAATTGGCAGAGACCGGTGGACCAACCAACTGTGGAGTGGGGTTTTGGTTCACATGGATTTTGGGGGAAATTGGCCGGCGTCGCCATGAGGGTGTGTTTGAAACTGACGGGAAAAGAGGTGGGTGAGGGTGGCAGAGATGGCGGTTGCAGTGGTGCCGACGGCAGTGAAGAGAATGTGGCGTCTTGGTGGGAATAA

Coding sequence (CDS)

ATGCGTCCAAATTGGCAGAGACCGGTGGACCAACCAACTGTGGAGTGGGGTTTTGGTTCACATGGATTTTGGGGGAAATTGGCCGGCGTCGCCATGAGGGTGTGTTTGAAACTGACGGGAAAAGAGGTGGGTGAGGGTGGCAGAGATGGCGGTTGCAGTGGTGCCGACGGCAGTGAAGAGAATGTGGCGTCTTGGTGGGAATAA

Protein sequence

MRPNWQRPVDQPTVEWGFGSHGFWGKLAGVAMRVCLKLTGKEVGEGGRDGGCSGADGSEENVASWWE*

Homology

[Close]

BLAST of CsaV3_5G034100 vs. NCBI nr
Match: KAE8648786.1 (hypothetical protein Csa_009080 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 9.9e-34
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MRPNWQRPVDQPTVEWGFGSHGFWGKLAGVAMRVCLKLTGKEVGEGGRDGGCSGADGSEE 60
          MRPNWQRPVDQPTVEWGFGSHGFWGKLAGVAMRVCLKLTGKEVGEGGRDGGCSGADGSEE
Sbjct: 1  MRPNWQRPVDQPTVEWGFGSHGFWGKLAGVAMRVCLKLTGKEVGEGGRDGGCSGADGSEE 60

Query: 61 NVASWWE 68
          NVASWWE
Sbjct: 61 NVASWWE 67

[Close]

BLAST of CsaV3_5G034100 vs. ExPASy TrEMBL
Match: A0A0A0KR25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608480 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.9e-31
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 5  WQRPVDQPTVEWGFGSHGFWGKLAGVAMRVCLKLTGKEVGEGGRDGGCSGADGSEENVAS 64
          WQRPVDQPTVEWGFGSHGFWGKLAGVAMRVCLKLTGKEVGEGGRDGGCSGADGSEENVAS
Sbjct: 6  WQRPVDQPTVEWGFGSHGFWGKLAGVAMRVCLKLTGKEVGEGGRDGGCSGADGSEENVAS 65

Query: 65 WWE 68
          WWE
Sbjct: 66 WWE 68

The following BLAST results are available for this feature:

BLAST of CsaV3_5G034100 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648786.1	9.9e-34	100.00	hypothetical protein Csa_009080 [Cucumis sativus]	[more]

BLAST of CsaV3_5G034100 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G034100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR25	2.9e-31	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608480 PE=4 SV=1	[more]

BLAST of CsaV3_5G034100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G034100.1	CsaV3_5G034100.1	mRNA