CsaV3_5G030260 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G030260
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Heat shock protein DnaJ, cysteine-rich domain containing protein
Location	chr5: 24867204 .. 24868476 (+)
RNA-Seq Expression	CsaV3_5G030260
Synteny	CsaV3_5G030260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATCTACATCCACAAAGAGAGAGAGATTTGAAGGGAAAAGAGAGAAGCACCCACGCAAAACCCACTCTTCACTAAACTCCAATTCCCTTCTTCTCTTAAAAACCACCAACTCCTCTCTTTGTCTACGTGTTCTTCCTTCTCACCACTTTCTTCTTTCTTTTCTTTCCTTCCAAATTACATTTATCAAAAATCTCCCAAACTAAATTATTAAAAATTTTAAGAAAATCTCTCATCCATTCCCCCTTCTCTCTCCCCAATCCCTCCCCCATGGTTCCCATCGTCCTCTCCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTCATGGACCACAAGCCCATGGCCGGCTCCTTCCCCCGCTGCCCTTCCTGCAACGGCTCTGGCCGCGTCCCCTGTCTCTGCTCCCGCTGGTCCGACGGCGACATCGGCTGCCGTACCTGCTCCGGCTCTGGTCGTATGTTCTGCAGCAGCTGTGGCGGCTCCGGCACCGGCCGCCCTATTCCATCTCAAATCTCCGTTCGTCGATCCAATTACCCTTCCTCTTCTTCTTCCTGATTCACCTTCTCTCTCTCTCTCTCTCACTACTCTAATATTTCCTTATCTTCTTCACCATTAATTATTAGGCCACAACACCATAAAATCAAATCGCCTCTGTAATTTGGGAGTTCTTGTGATTTACTAAGAGCGAATGAGAGGCATTATCGTTTCCCTCAATTCAGATTCGTATATACAAATCTATACTTCTCGTAATTAATTATACTGATTTTGTTAATCATAATTCTTTCTTATTCCTTCTTCTTTTTCTTCTCCCTGAATCTATGTTTCATTATTGCTTCGTTTGATTCGTTGATTATCATTTTTAATTACAACCTGCTGCATTCACTTCATATATATAAATCGGATTAATTGTAATTTTTGGTGTTATGAATTGAATTCATGTTTAAATTATGGAATCTGATGAATCTCTTGATTTGTGGAGAGCAGATTATGCTGAGATTTTCCTCTTTTTCTTTTTGCTATGAATAAATTAATAACGAAAGAATTGATGAACAAGTTGCATATTATAAAATTTGGAGTCAATATTGTTATTTGTCTTTGTGTATATGCAAATTTCCCATTAACTATTTTATTCTTATTGTTATCTATTACTATTATTTTCACATCATATGATCATATCATATAATATATCATTGACTGTGTTTGGTTTTCTATTTATTTTGGTTTCTTCAAAGATATTCTTATCTTAAATAAT

mRNA sequence

ATGGTTCCCATCGTCCTCTCCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTCATGGACCACAAGCCCATGGCCGGCTCCTTCCCCCGCTGCCCTTCCTGCAACGGCTCTGGCCGCGTCCCCTGTCTCTGCTCCCGCTGGTCCGACGGCGACATCGGCTGCCGTACCTGCTCCGGCTCTGGTCGTATGTTCTGCAGCAGCTGTGGCGGCTCCGGCACCGGCCGCCCTATTCCATCTCAAATCTCCGTTCGTCGATCCAATTACCCTTCCTCTTCTTCTTCCTGA

Coding sequence (CDS)

ATGGTTCCCATCGTCCTCTCCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTCATGGACCACAAGCCCATGGCCGGCTCCTTCCCCCGCTGCCCTTCCTGCAACGGCTCTGGCCGCGTCCCCTGTCTCTGCTCCCGCTGGTCCGACGGCGACATCGGCTGCCGTACCTGCTCCGGCTCTGGTCGTATGTTCTGCAGCAGCTGTGGCGGCTCCGGCACCGGCCGCCCTATTCCATCTCAAATCTCCGTTCGTCGATCCAATTACCCTTCCTCTTCTTCTTCCTGA

Protein sequence

MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS*

Homology

[Close]

BLAST of CsaV3_5G030260 vs. NCBI nr
Match: XP_011655560.2 (uncharacterized protein LOC105435558 [Cucumis sativus] >KAE8648678.1 hypothetical protein Csa_008156 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 4.3e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS 102
           CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS 101

[Close]

BLAST of CsaV3_5G030260 vs. NCBI nr
Match: XP_038892730.1 (uncharacterized protein LOC120081711 [Benincasa hispida])

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-47
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNG+GRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 101
           CRTCSGSGRMFCSSCGGSGTGRPIP+QISVRRSNYPSSSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS 100

[Close]

BLAST of CsaV3_5G030260 vs. NCBI nr
Match: XP_008446034.1 (PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo])

HSP 1 Score: 199.1 bits (505), Expect = 1.8e-47
Identity = 96/100 (96.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNG+GRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 101
           CRTCSGSGRMFCSSCGGSGTGRP+P+QIS+RRSNYPSSSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPLPAQISLRRSNYPSSSS 100

[Close]

BLAST of CsaV3_5G030260 vs. NCBI nr
Match: XP_023552719.1 (uncharacterized protein LOC111810279 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.3 bits (469), Expect = 2.7e-43
Identity = 92/100 (92.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVP+VL+QLATGLSVLAGAVLVKSVMD KPMAGSFPRCPSCNG+GRVPCLCSRWSD DIG
Sbjct: 1   MVPVVLTQLATGLSVLAGAVLVKSVMD-KPMAGSFPRCPSCNGTGRVPCLCSRWSDRDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 101
           CRTCSGSGRMFCSSCGGSGTGRPIP+QISVRR+NYP SSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 99

[Close]

BLAST of CsaV3_5G030260 vs. NCBI nr
Match: XP_022151926.1 (uncharacterized protein LOC111019780 [Momordica charantia])

HSP 1 Score: 183.7 bits (465), Expect = 7.8e-43
Identity = 87/99 (87.88%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVP+VL+QLATGLSVLAGAVLVKSVMD KPMAG FPRCPSCNG+GRV CLCSRWSDGD+G
Sbjct: 1   MVPMVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVACLCSRWSDGDVG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSS 100
           CRTCSGSGRMFCSSCGG+GTGRPIP+Q+SVRR+N+PSSS
Sbjct: 61  CRTCSGSGRMFCSSCGGTGTGRPIPAQLSVRRTNHPSSS 99

[Close]

BLAST of CsaV3_5G030260 vs. ExPASy TrEMBL
Match: A0A0A0KPV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589380 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.9e-48
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS 102
            RTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS
Sbjct: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS 101

[Close]

BLAST of CsaV3_5G030260 vs. ExPASy TrEMBL
Match: A0A1S3BEY5 (uncharacterized protein LOC103488885 OS=Cucumis melo OX=3656 GN=LOC103488885 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 8.7e-48
Identity = 96/100 (96.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNG+GRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 101
           CRTCSGSGRMFCSSCGGSGTGRP+P+QIS+RRSNYPSSSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPLPAQISLRRSNYPSSSS 100

[Close]

BLAST of CsaV3_5G030260 vs. ExPASy TrEMBL
Match: A0A6J1DG38 (uncharacterized protein LOC111019780 OS=Momordica charantia OX=3673 GN=LOC111019780 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.8e-43
Identity = 87/99 (87.88%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVP+VL+QLATGLSVLAGAVLVKSVMD KPMAG FPRCPSCNG+GRV CLCSRWSDGD+G
Sbjct: 1   MVPMVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVACLCSRWSDGDVG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSS 100
           CRTCSGSGRMFCSSCGG+GTGRPIP+Q+SVRR+N+PSSS
Sbjct: 61  CRTCSGSGRMFCSSCGGTGTGRPIPAQLSVRRTNHPSSS 99

[Close]

BLAST of CsaV3_5G030260 vs. ExPASy TrEMBL
Match: A0A6J1K8V1 (uncharacterized protein LOC111493328 OS=Cucurbita maxima OX=3661 GN=LOC111493328 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.4e-43
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNG+GRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 101
           CRTCSGSGRMFCSSCGGSGTGRPIP+QISVRR+NYP SSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 99

[Close]

BLAST of CsaV3_5G030260 vs. ExPASy TrEMBL
Match: A0A6J1GZK6 (uncharacterized protein LOC111458584 OS=Cucurbita moschata OX=3662 GN=LOC111458584 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.4e-43
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNG+GRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 101
           CRTCSGSGRMFCSSCGGSGTGRPIP+QISVRR+NYP SSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 99

[Close]

BLAST of CsaV3_5G030260 vs. TAIR 10
Match: AT5G43260.1 (chaperone protein dnaJ-related )

HSP 1 Score: 157.9 bits (398), Expect = 4.3e-39
Identity = 72/96 (75.00%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
          M PIV++QLATG+SVLAGAV +KSVMD KPMAG FPRCP+CNG+GRV C CSRWSDGD+G
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQKPMAGQFPRCPTCNGTGRVTCFCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYP 97
          CR CSGSGR  CS+CGGSGTGRP+P+QI+V+  N P
Sbjct: 61 CRRCSGSGRAACSNCGGSGTGRPLPAQITVQPPNRP 96

[Close]

BLAST of CsaV3_5G030260 vs. TAIR 10
Match: AT3G44020.1 (thylakoid lumenal P17.1 protein )

HSP 1 Score: 40.4 bits (93), Expect = 1.0e-03
Identity = 20/50 (40.00%), Postives = 26/50 (52.00%), Query Frame = 0


Query: 38  CPSCNGSGRVPCL-C----SRWSDGDIGCRTCSGSGRMFCSSCGGSGTGR 83
           C  C G+G   C+ C     +   G + C+ C GSG +FC  CGGSG  R
Sbjct: 108 CERCGGNGGTKCVFCLEGKMKVESGMVDCKVCKGSGLIFCKKCGGSGYSR 157

The following BLAST results are available for this feature:

BLAST of CsaV3_5G030260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655560.2	4.3e-49	100.00	uncharacterized protein LOC105435558 [Cucumis sativus] >KAE8648678.1 hypothetica...	[more]
XP_038892730.1	1.1e-47	97.00	uncharacterized protein LOC120081711 [Benincasa hispida]	[more]
XP_008446034.1	1.8e-47	96.00	PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo]	[more]
XP_023552719.1	2.7e-43	92.00	uncharacterized protein LOC111810279 [Cucurbita pepo subsp. pepo]	[more]
XP_022151926.1	7.8e-43	87.88	uncharacterized protein LOC111019780 [Momordica charantia]	[more]

BLAST of CsaV3_5G030260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G030260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPV9	3.9e-48	99.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589380 PE=4 SV=1	[more]
A0A1S3BEY5	8.7e-48	96.00	uncharacterized protein LOC103488885 OS=Cucumis melo OX=3656 GN=LOC103488885 PE=...	[more]
A0A6J1DG38	3.8e-43	87.88	uncharacterized protein LOC111019780 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1K8V1	8.4e-43	92.00	uncharacterized protein LOC111493328 OS=Cucurbita maxima OX=3661 GN=LOC111493328...	[more]
A0A6J1GZK6	8.4e-43	92.00	uncharacterized protein LOC111458584 OS=Cucurbita moschata OX=3662 GN=LOC1114585...	[more]

BLAST of CsaV3_5G030260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43260.1	4.3e-39	75.00	chaperone protein dnaJ-related	[more]
AT3G44020.1	1.0e-03	40.00	thylakoid lumenal P17.1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..101
None	No IPR available	PANTHER	PTHR34687	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 1..96
None	No IPR available	PANTHER	PTHR34687:SF4	BNAC09G17400D PROTEIN	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G030260.1	CsaV3_5G030260.1	mRNA