CsaV3_5G028070 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G028070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 23192560 .. 23192739 (-)
RNA-Seq Expression	CsaV3_5G028070
Synteny	CsaV3_5G028070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGATGAACCGAAACGTAATTCAGGCTCCGTGGGCTGCACCCGTCTCATTGATAAGGACATATTAGCTTGGAGCCTCAGTCGTCTCATTGATAAGGACATCTTTGCAAATTCAGACCGGAGCGGTTCTCGTTCTTTAGTAGTTCGATCGGCTACTAGAGACGAGCAAAGAGCCTAA

mRNA sequence

ATGAAAGATGAACCGAAACGTAATTCAGGCTCCGTGGGCTGCACCCGTCTCATTGATAAGGACATATTAGCTTGGAGCCTCAGTCGTCTCATTGATAAGGACATCTTTGCAAATTCAGACCGGAGCGGTTCTCGTTCTTTAGTAGTTCGATCGGCTACTAGAGACGAGCAAAGAGCCTAA

Coding sequence (CDS)

ATGAAAGATGAACCGAAACGTAATTCAGGCTCCGTGGGCTGCACCCGTCTCATTGATAAGGACATATTAGCTTGGAGCCTCAGTCGTCTCATTGATAAGGACATCTTTGCAAATTCAGACCGGAGCGGTTCTCGTTCTTTAGTAGTTCGATCGGCTACTAGAGACGAGCAAAGAGCCTAA

Protein sequence

MKDEPKRNSGSVGCTRLIDKDILAWSLSRLIDKDIFANSDRSGSRSLVVRSATRDEQRA*

Homology

[Close]

BLAST of CsaV3_5G028070 vs. NCBI nr
Match: KAE8648594.1 (hypothetical protein Csa_008089 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 2.4e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MKDEPKRNSGSVGCTRLIDKDILAWSLSRLIDKDIFANSDRSGSRSLVVRSATRDEQRA 60
          MKDEPKRNSGSVGCTRLIDKDILAWSLSRLIDKDIFANSDRSGSRSLVVRSATRDEQRA
Sbjct: 1  MKDEPKRNSGSVGCTRLIDKDILAWSLSRLIDKDIFANSDRSGSRSLVVRSATRDEQRA 59

[Close]

BLAST of CsaV3_5G028070 vs. ExPASy TrEMBL
Match: A0A0A0KP91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G546585 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-15
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1  MKDEPKRNSGSVGCTRLIDKDILAWSLSRLIDKDIFANSDRSGSRSLVVRSATRDEQRA 60
          MKDEPK +SG +GCT LIDKDILAWS  RLIDKDIFANS +SGS SLVVR ATRDEQ A
Sbjct: 1  MKDEPKCSSGFMGCTHLIDKDILAWSHGRLIDKDIFANSYQSGSCSLVVRLATRDEQIA 59

The following BLAST results are available for this feature:

BLAST of CsaV3_5G028070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648594.1	2.4e-23	100.00	hypothetical protein Csa_008089 [Cucumis sativus]	[more]

BLAST of CsaV3_5G028070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G028070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP91	3.4e-15	79.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G546585 PE=4 SV=1	[more]

BLAST of CsaV3_5G028070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G028070.1	CsaV3_5G028070.1	mRNA