CsaV3_5G026970 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G026970
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptionbifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase
Locationchr5: 22006876 .. 22009031 (-)
RNA-Seq ExpressionCsaV3_5G026970
SyntenyCsaV3_5G026970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATGATTAATTAAAAAATTAAGAAAAGAAAACATAAAGTCCACTTTTCTCTTCTTCTCCACGATATTCCCATCTCACATTTTCCATCTGCACAAAAAACTATCCTAAAACCACGGTAGCCATGGCCACGACGACTGATGTGACCTTCGACGACGATCGACGTCTGACGATGACCCACGAAGCGAATAGATTAGCTACAATCGAATAGCTCCACTTGAACGGCTCCACTCGAACGTCTGACGATGACCTACTTCAACGAGGCTCGTGAGCAGTGGCCATGGCTTTCCTGTTTTTGATTTTGAGACATTGCTCCATCAACAATCTACTTGAAGAATTCGAGTACGATTCCACACATCCTATCAATTTGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTTATTGGATCCTTCTATTCCAAGACGAAAGCTATGGTGAGCTACTGATTTTCATTGCTTCATTGTTGTTTTGTTGTTTCCCCCCTTTTGTTTAATTTTTATTTTCAAATACTTGAAGTTGTATGTTTTTAGTTGCATTGTGGAAATTTGAGTTTAGATCTGTAAGACCAGAGTGAATGGTTTTGTTTAGCAATTGAAATCAGTCATTGTTTTGATTGATATTTGGGATTATTGTAAAAAGAATCACAATTATTTGCTCGGCGTGGAGTAATTTCCCATGGTCGATACATGTAGAGGAATACGAGCAATTCCCATTTCATGATCAATGGGAGCTTCTCGTTTTTATCTCAGATTGATAAACTACCCTTCAAACTTTAATCAATCAATAAAGCAAATGTGATCCCGTGCCGCCTCATCTTTCTTTTATTTATAGTTTTATCTTCTCAATGATTATACAATTTTCCCTATTCAGCTCGTTTAAAATCAACCACTTTTGCTGATTTTTCTATTAGGAAAATAGACGCAAAGAAGTTTCATGGGGTTCTATAACTTTGATTAATATTTTTGAATTCCTTGGCTTTTGGGTGTAGATTTTGATTTTTCTATTTATTTTTTCCAATCCTCAAACAAGTAAGACGAATTTGAGCTTCGAAAATGGTTGCTGCCCGCTTTGGACAGTGGAATTTTCTTTTAAACCATCCTGGGAGAAAGATTGCATATGGTAACCACGAAAGAGAGATTGAAAAAGAGACGAACACAATTTAAAAAGTAGGTAGATCGAATAAGAAGGGGCCGCCGACGTTTTTTGGGATTATAGTCGATGGTGGCGGTGCACGGTGGCTCGACAGTGACGATGTACAGTCTGCCAAATGGAGACATCACTTGGTTGTTATTCATATTTGTGAAGATTTAGGTATTGGTTTGTTTTGACAATGCTACATTGCATGCAGAGCAATTGCTTGACTTAATTTCTGAATGAGTGATAATTCTTGGGTGGTCTGATTTTTTCATTTCAATTGTCCTCTTTAGAAGATGGTCTAAAGTTCAGCGAAAGTTTTCCTGTAATGAAAACATGAGTTGCCAGTACAGCCTCTGACCGAGGTGTAAGTTGTTTGTTGTTTATTTGTGTGCTGGAAACACAGTATAACTATGTTGGTGTTTTTTTTATTAGTTGAGTAATTGAATATGTATGTTTCAGAACGAAATTAGGGGTTCAAATTCAGGGGAAACCTTTGCCCAGAAATTGATTAAGAGACTAGCTAAGCGGAGAGGAATGGTTATGATGTTAGAATTTGATCCGATTGGTCCACTCGGGTAGGTCAAGCTACGAACTTCACCATTTTAGCAAGTTGGTTTGGATTTTGCCTAACTTTACTTTGGAAATTATCATCCAGCAATTAGGTCTCACTTGCCAAATATTATTTCAATCAACTACCTGCAACTAGTATCACATGACTATTGGAGGTTGGTAACAAGTATGTTATTATTATTAGTATTCTCTGGACATCTTATCTTCTTTTATATATATATATTAGACTTTTATTATGTTGTTTTAAACTTTTATTTGGTGTCTTCATAAATTAGTTTTGAATTTAATTAAATTGTTTCCTAATATTTCAATTAATTATGGTATATTGTACTACTAGAATATCATCATTTTACTAACGGCATATATTACATATACTCATCATAAAGTTGCATCATCCATGTTTCTGTAAACAATTTATCGTAAACCTTTAGTTCTACCATATACAC

mRNA sequence

ATGGCTTTCCTGTTTTTGATTTTGAGACATTGCTCCATCAACAATCTACTTGAAGAATTCGAGTACGATTCCACACATCCTATCAATTTGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTTATTGGATCCTTCTATTCCAAGACGAAAGCTATGAACGAAATTAGGGGTTCAAATTCAGGGGAAACCTTTGCCCAGAAATTGATTAAGAGACTAGCTAAGCGGAGAGGAATGGTTATGATGTTAGAATTTGATCCGATTGGTCCACTCGGCAATTAG

Coding sequence (CDS)

ATGGCTTTCCTGTTTTTGATTTTGAGACATTGCTCCATCAACAATCTACTTGAAGAATTCGAGTACGATTCCACACATCCTATCAATTTGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTTATTGGATCCTTCTATTCCAAGACGAAAGCTATGAACGAAATTAGGGGTTCAAATTCAGGGGAAACCTTTGCCCAGAAATTGATTAAGAGACTAGCTAAGCGGAGAGGAATGGTTATGATGTTAGAATTTGATCCGATTGGTCCACTCGGCAATTAG

Protein sequence

MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLGN*
Homology
[Close]
BLAST of CsaV3_5G026970 vs. NCBI nr
Match: KGN51802.2 (hypothetical protein Csa_008328 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 4.5e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNEIRGSN 60
          MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNEIRGSN
Sbjct: 1  MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNEIRGSN 60

Query: 61 SGETFAQKLIKRLAKRRGMVMMLEFDPIGPLGN 94
          SGETFAQKLIKRLAKRRGMVMMLEFDPIGPLGN
Sbjct: 61 SGETFAQKLIKRLAKRRGMVMMLEFDPIGPLGN 93

[Close]
BLAST of CsaV3_5G026970 vs. NCBI nr
Match: XP_031743168.1 (probable LRR receptor-like serine/threonine-protein kinase At1g51810 isoform X2 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 3.3e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 54  NEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLGN 94
           NEIRGS+SGETFA+KLIKRLAKRRGM MMLEFDPIGPLGN
Sbjct: 101 NEIRGSDSGETFAKKLIKRLAKRRGMAMMLEFDPIGPLGN 140

[Close]
BLAST of CsaV3_5G026970 vs. NCBI nr
Match: XP_011657789.1 (probable LRR receptor-like serine/threonine-protein kinase At1g51810 isoform X1 [Cucumis sativus] >KGN48425.1 hypothetical protein Csa_002811 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 3.3e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 54  NEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLGN 94
           NEIRGS+SGETFA+KLIKRLAKRRGM MMLEFDPIGPLGN
Sbjct: 102 NEIRGSDSGETFAKKLIKRLAKRRGMAMMLEFDPIGPLGN 141

[Close]
BLAST of CsaV3_5G026970 vs. NCBI nr
Match: XP_038881379.1 (uncharacterized protein LOC120072917 isoform X2 [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 6.2e-10
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 0 

Query: 25  THPINLGIGFKEDEIPNFIGSFYSKTKAMNEIRGSNSGETFAQKLIKRLAKRRGMVMMLE 84
           +H I + +    ++ P F  SF       NEIRGS+SGETFA+KLIKRLAKRR + +MLE
Sbjct: 74  SHLIAIHVCEDSEDGPKFSKSF--PVMKTNEIRGSDSGETFAKKLIKRLAKRRAIAVMLE 133

Query: 85  FDPIGPLGN 94
           FDP GPLGN
Sbjct: 134 FDPTGPLGN 140

[Close]
BLAST of CsaV3_5G026970 vs. NCBI nr
Match: XP_038881378.1 (uncharacterized protein LOC120072917 isoform X1 [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 6.2e-10
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 0 

Query: 25  THPINLGIGFKEDEIPNFIGSFYSKTKAMNEIRGSNSGETFAQKLIKRLAKRRGMVMMLE 84
           +H I + +    ++ P F  SF       NEIRGS+SGETFA+KLIKRLAKRR + +MLE
Sbjct: 74  SHLIAIHVCEDSEDGPKFSKSF--PVMKTNEIRGSDSGETFAKKLIKRLAKRRAIAVMLE 133

Query: 85  FDPIGPLGN 94
           FDP GPLGN
Sbjct: 134 FDPTGPLGN 140

[Close]
BLAST of CsaV3_5G026970 vs. ExPASy Swiss-Prot
Match: Q9LQ04 (Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana OX=3702 GN=NRS/ER PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-09
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HP+  GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 117 FEYDSGHPLGSGIGFKEEDTPNFTGSFYSKTKAMVE 152

[Close]
BLAST of CsaV3_5G026970 vs. ExPASy Swiss-Prot
Match: Q9LPG6 (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana OX=3702 GN=RHM2 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.2e-09
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD+THP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 487 FEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVE 522

[Close]
BLAST of CsaV3_5G026970 vs. ExPASy Swiss-Prot
Match: Q9SYM5 (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana OX=3702 GN=RHM1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-08
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD  HP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 489 FEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVE 524

[Close]
BLAST of CsaV3_5G026970 vs. ExPASy Swiss-Prot
Match: Q9LH76 (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 OS=Arabidopsis thaliana OX=3702 GN=RHM3 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-08
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD+ HP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 484 FEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVE 519

[Close]
BLAST of CsaV3_5G026970 vs. ExPASy TrEMBL
Match: A0A0A0KR13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522900 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.4e-22
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 1  MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNEIRGSN 60
          MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAM  +   N
Sbjct: 1  MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMTNLSFEN 60

[Close]
BLAST of CsaV3_5G026970 vs. ExPASy TrEMBL
Match: A0A0A0KFD5 (Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G486970 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 54  NEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLGN 94
           NEIRGS+SGETFA+KLIKRLAKRRGM MMLEFDPIGPLGN
Sbjct: 102 NEIRGSDSGETFAKKLIKRLAKRRGMAMMLEFDPIGPLGN 141

[Close]
BLAST of CsaV3_5G026970 vs. ExPASy TrEMBL
Match: A0A5D3CNE6 (LRR receptor-like serine/threonine-protein kinase GSO1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005670 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.7e-10
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 54  NEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLGN 94
           NEIRGS+SGETFA+KL+KRLAK+RGM +MLEFDP GPLGN
Sbjct: 102 NEIRGSDSGETFAKKLMKRLAKQRGMAVMLEFDPFGPLGN 141

[Close]
BLAST of CsaV3_5G026970 vs. ExPASy TrEMBL
Match: A0A1S3B0F0 (LRR receptor-like serine/threonine-protein kinase GSO1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484690 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.7e-10
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 54  NEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLGN 94
           NEIRGS+SGETFA+KL+KRLAK+RGM +MLEFDP GPLGN
Sbjct: 102 NEIRGSDSGETFAKKLMKRLAKQRGMAVMLEFDPFGPLGN 141

[Close]
BLAST of CsaV3_5G026970 vs. ExPASy TrEMBL
Match: A0A5A7TLE8 (Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003090 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HPIN GIGFKEDEIPNFIGSFYSKTKAM E
Sbjct: 117 FEYDSAHPINSGIGFKEDEIPNFIGSFYSKTKAMVE 152

[Close]
BLAST of CsaV3_5G026970 vs. TAIR 10
Match: AT1G63000.1 (nucleotide-rhamnose synthase/epimerase-reductase )

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-10
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HP+  GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 117 FEYDSGHPLGSGIGFKEEDTPNFTGSFYSKTKAMVE 152

[Close]
BLAST of CsaV3_5G026970 vs. TAIR 10
Match: AT1G53500.1 (NAD-dependent epimerase/dehydratase family protein )

HSP 1 Score: 60.8 bits (146), Expect = 6.6e-10
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD+THP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 487 FEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVE 522

[Close]
BLAST of CsaV3_5G026970 vs. TAIR 10
Match: AT1G78570.1 (rhamnose biosynthesis 1 )

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-09
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD  HP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 489 FEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVE 524

[Close]
BLAST of CsaV3_5G026970 vs. TAIR 10
Match: AT3G14790.1 (rhamnose biosynthesis 3 )

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-09
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD+ HP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 484 FEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVE 519

The following BLAST results are available for this feature:
BLAST of CsaV3_5G026970 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51802.24.5e-45100.00hypothetical protein Csa_008328 [Cucumis sativus][more]
XP_031743168.13.3e-1192.50probable LRR receptor-like serine/threonine-protein kinase At1g51810 isoform X2 ... [more]
XP_011657789.13.3e-1192.50probable LRR receptor-like serine/threonine-protein kinase At1g51810 isoform X1 ... [more]
XP_038881379.16.2e-1056.52uncharacterized protein LOC120072917 isoform X2 [Benincasa hispida][more]
XP_038881378.16.2e-1056.52uncharacterized protein LOC120072917 isoform X1 [Benincasa hispida][more]
BLAST of CsaV3_5G026970 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LQ045.4e-0975.00Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reducta... [more]
Q9LPG69.2e-0975.00Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epime... [more]
Q9SYM54.6e-0872.22Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epime... [more]
Q9LH764.6e-0872.22Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epime... [more]
BLAST of CsaV3_5G026970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KR134.4e-2290.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522900 PE=4 SV=1[more]
A0A0A0KFD51.6e-1192.50Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G486... [more]
A0A5D3CNE68.7e-1082.50LRR receptor-like serine/threonine-protein kinase GSO1 isoform X1 OS=Cucumis mel... [more]
A0A1S3B0F08.7e-1082.50LRR receptor-like serine/threonine-protein kinase GSO1 isoform X1 OS=Cucumis mel... [more]
A0A5A7TLE81.5e-0991.67Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reducta... [more]
BLAST of CsaV3_5G026970 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G63000.13.8e-1075.00nucleotide-rhamnose synthase/epimerase-reductase [more]
AT1G53500.16.6e-1075.00NAD-dependent epimerase/dehydratase family protein [more]
AT1G78570.13.3e-0972.22rhamnose biosynthesis 1 [more]
AT3G14790.13.3e-0972.22rhamnose biosynthesis 3 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G026970.1CsaV3_5G026970.1mRNA