CsaV3_5G024770 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G024770
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 19722586 .. 19722923 (+)
RNA-Seq ExpressionCsaV3_5G024770
SyntenyCsaV3_5G024770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTTTAGCAGGAAACCCTACGCCCATCATTTTCATCTTTTGTCTTATTCTTCACGCCGGCCGTCTCTCCCCGGCTCAGACCGTCGGCGGCCACGCCGTCTCCTTGTGCTCGTGCCCCCGCTGCCGCTCTTTCTAGCAAATTGCACTAACTTTCCACTTCATTGTTGCCGGTATTCTTTCAAACTCTATCTGTGTATTTCTTCTCAGCAACTCAACTTAAGATTTGTCTAATGAAAGAAAGCAGGAGTTGCAATAATTTCAAAACAACCTCAACATGTTTATAGTTGTAGATTTTTTCTTTTTGATAGGAACACGAAGTTCATAGCTGTAGATTATAG

mRNA sequence

AACTTTAGCAGGAAACCCTACGCCCATCATTTTCATCTTTTGTCTTATTCTTCACGCCGGCCGTCTCTCCCCGGCTCAGACCGTCGGCGGCCACGCCGTCTCCTTGTGCTCGTGCCCCCGCTGCCGCTCTTTCTAGCAAATTGCACTAACTTTCCACTTCATTGTTGCCGGAACACGAAGTTCATAGCTGTAGATTATAG

Coding sequence (CDS)

AACTTTAGCAGGAAACCCTACGCCCATCATTTTCATCTTTTGTCTTATTCTTCACGCCGGCCGTCTCTCCCCGGCTCAGACCGTCGGCGGCCACGCCGTCTCCTTGTGCTCGTGCCCCCGCTGCCGCTCTTTCTAGCAAATTGCACTAACTTTCCACTTCATTGTTGCCGGAACACGAAGTTCATAGCTGTAGATTATAG

Protein sequence

NFSRKPYAHHFHLLSYSSRRPSLPGSDRRRPRRLLVLVPPLPLFLANCTNFPLHCCRNTKFIAVDYX
Homology
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BLAST of CsaV3_5G024770 vs. NCBI nr
Match: KAE8648466.1 (hypothetical protein Csa_009001, partial [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 2.6e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  NFSRKPYAHHFHLLSYSSRRPSLPGSDRRRPRRLLVLVPPLPLFLANCTNFPLHCCRNTK 60
          NFSRKPYAHHFHLLSYSSRRPSLPGSDRRRPRRLLVLVPPLPLFLANCTNFPLHCCRNTK
Sbjct: 1  NFSRKPYAHHFHLLSYSSRRPSLPGSDRRRPRRLLVLVPPLPLFLANCTNFPLHCCRNTK 60

Query: 61 FIAVDY 67
          FIAVDY
Sbjct: 61 FIAVDY 66

The following BLAST results are available for this feature:
BLAST of CsaV3_5G024770 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648466.12.6e-31100.00hypothetical protein Csa_009001, partial [Cucumis sativus][more]
BLAST of CsaV3_5G024770 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G024770 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G024770 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G024770.1CsaV3_5G024770.1mRNA