CsaV3_5G023860 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G023860
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 18327188 .. 18327397 (+)
RNA-Seq Expression	CsaV3_5G023860
Synteny	CsaV3_5G023860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACCTGGACTAAGCTGGGGATCTGCGGGAGCTTGGGTTGGAAGAAAGAAGAGAAAGAGGGAATCTTAAGTGAAAATCCGGCAGAGAAGAAAGAGAAAAATGAGGAAGGTTGAAAGAAATTGGGGTGTCAGTGTTTGGTAGGAGAAGGAAAATGGAGAAAGGCGAAAGGGATGGAGATGGCTCCGGCGACGGCGGAGGTGGCGTAG

mRNA sequence

ATGGGTACCTGGACTAAGCTGGGGATCTGCGGGAGCTTGGGTTGGAAGAAAGAAGAGAAAGAGGGAATCTTAAGTGAAAATCCGGCAGAGAAGAAAGAGAAAAATGAGGAAGGAGAAGGAAAATGGAGAAAGGCGAAAGGGATGGAGATGGCTCCGGCGACGGCGGAGGTGGCGTAG

Coding sequence (CDS)

ATGGGTACCTGGACTAAGCTGGGGATCTGCGGGAGCTTGGGTTGGAAGAAAGAAGAGAAAGAGGGAATCTTAAGTGAAAATCCGGCAGAGAAGAAAGAGAAAAATGAGGAAGGAGAAGGAAAATGGAGAAAGGCGAAAGGGATGGAGATGGCTCCGGCGACGGCGGAGGTGGCGTAG

Protein sequence

MGTWTKLGICGSLGWKKEEKEGILSENPAEKKEKNEEGEGKWRKAKGMEMAPATAEVA*

Homology

[Close]

BLAST of CsaV3_5G023860 vs. NCBI nr
Match: KGN51026.1 (hypothetical protein Csa_009360 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MGTWTKLGICGSLGWKKEEKEGILSENPAEKKEKNEEGEGKWRKAKGMEMAPATAEVA 59
          MGTWTKLGICGSLGWKKEEKEGILSENPAEKKEKNEEGEGKWRKAKGMEMAPATAEVA
Sbjct: 1  MGTWTKLGICGSLGWKKEEKEGILSENPAEKKEKNEEGEGKWRKAKGMEMAPATAEVA 58

[Close]

BLAST of CsaV3_5G023860 vs. ExPASy TrEMBL
Match: A0A0A0KTL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G409680 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.6e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MGTWTKLGICGSLGWKKEEKEGILSENPAEKKEKNEEGEGKWRKAKGMEMAPATAEVA 59
          MGTWTKLGICGSLGWKKEEKEGILSENPAEKKEKNEEGEGKWRKAKGMEMAPATAEVA
Sbjct: 1  MGTWTKLGICGSLGWKKEEKEGILSENPAEKKEKNEEGEGKWRKAKGMEMAPATAEVA 58

The following BLAST results are available for this feature:

BLAST of CsaV3_5G023860 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51026.1	1.4e-23	100.00	hypothetical protein Csa_009360 [Cucumis sativus]	[more]

BLAST of CsaV3_5G023860 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G023860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTL5	6.6e-24	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G409680 PE=4 SV=1	[more]

BLAST of CsaV3_5G023860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G023860.1	CsaV3_5G023860.1	mRNA