CsaV3_5G023070 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G023070
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 17187009 .. 17189153 (+)
RNA-Seq ExpressionCsaV3_5G023070
SyntenyCsaV3_5G023070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGGAAAGAAAAATCTAGGTAAAGCTCTCAAGGAATATATGGCACCCAAACCAAGCCAAGAAGATGCCAGAAAAGTCCGTTCCAACGGTCTTGTGTTGGAATAACAAGTCACGCGTCAGCGCAAGGGATCGAAATGAAAAAGAAGAGATAGATAAAACAAAAAAGAAATCTCAAAGCCATTGATAATCAATGGAGTGGAAATAGGGTTTCCTAAAGATAAAATGGTTGGTTTATTAGCAATGCTTCAAGAAACGCAGGAAGAAGAGATAGATGATGAAGGGAAAGAAAAAGAACAAAAGGAAAAGGAGAAGAAGACGAGAAGTGAAAAAGAAGGGGAAGAGAAAATGAGGAGAGAAGACAAAGAAAAGAAAGAAAAAAGATAGAAAAGGAAGTACGTCAAGGAAGGAAAGAAACCACTTCCTTACCAATTGCACTCACAGAATTCAAAAGGGTTGCAAGAAAGGCCCAAGAAAAGGAGCAAGTAAAATCTAGGCTATTGAAGATCAAGCTTAAGGCGTCAAGGCGTCAAGGCGTCAAGGCATGAGAGAGAAGGGAAACAGGGAGCGGGAAGAGCTCCTCAACAAAGTTAAAAAGATAGCCCTCTCTGTAGAGAGAGATAAGACAAAGAAAACTCCAAGCGAACTGTGTGACGAGTTGGAGAAGGAACTGGAAGATGAAAATTCTCTAGAAGAGGTGATAAAACCTTCAAGAAAAAGGAAGGTTACGATGAAGAAGGTCTTCCAGTCTCTAATCTTCAGCATCTCAGTCGGCTTGATTCCAGAGGCTTCAATCTTCAACCGTTCGTCAGCGTTCGACGTACGGCAGCTCGTTTTCAGATGGCCACCATACGACAGTCTTCTCCGATTCCAGCGCACGGCTCCAATCGTCCGATCTTCAGCGCACAGTTGAGGACAGCCACAGTACGACAGTCTTCTCCTATTCTAGAAGTACGCGGGTTCTTCCCCGATTTCTTCATGTTTCCTTCTCTTAAGTTATTAAGTTTCTTTCCTTCTCCCCTCGTATGTTTGTATAAGTTACAAATGACAATTTCATTGTAATTTCTTTTATTTTACTGTCTCTGATTTCTTCAGGTTGCCTATCTTTCCCTCTCCCCTCGTATGTTATGAGTAAAATACTTGTGCCATATGAAAATTTTCAAGAAAAAAAAATTGTAAAAAAGATCTTGGATAGTTGGACTGAGAATAATTAATAACACCCTTATTTTTCATTACATGAAGTTTTCTATCCAGTTCTAATACTTTCAAATTGAGTAGGAACATACTTTTATTGTTTGAGGATATTCATTTAAAGTTATGAATAAAATGCTTGTGCCACTTAAACATTTTCAAGAAAAGAAATTGTAAAAGGTCTTGGCTAGCTGTACTAAGAATAATTAATAACATCCTTATTTCTCAAAACATGAAGTTTTCTATCCAGTTCTAATACTCTTTGGTATTGATAATATAACTCTTCTTTAAAGTATTCATCATTTTCTTTTCACTTCTAACATAAATATGTTGACATGAAATTTGACAAAAAAATGTCTTGTGATTTATCAGAAGGGCCATGGTATTTCTGAATCTCTCCTTAGTGAGGCAAAGAAAGTGACACGCATGTTTTTCCAACTTCTTTGTAAAGAAAAAATTAAAATCAAGTTGACTCCAGACAGTGGATACAAGTTTGTTGAAGAGAATAGGATGTTATTTCTCACACATGTAAACAGCCAAATTTTCTGTTGATAATTTCAAGAAGCCAATGCGAATTTAAAATTTTATATGCAGAGGGTATCAAAGAGTAGGGAAAAACATAACTAGAGGAGTTTCAGATATGCATGAAGCTATAGACGTGAGCTTGTCTTCATTTATTGAACAAGTTACTGATATTAACTTTCCATGTTATAGTGGAAGCCATCTATTTTTGTATTTTGTATTGCTAAACTTCTGTGCCTTCACGTTTGCAATTGTATACAGTGCTATAGGAAATTTAAACCAGGAACTGTGGAACTCTTGGCAAAACAATGGAGGGTAGTAACCAATGGTAAGCAAGTTGCTGAGAACGGCCACCGTCTCACGCACAAGCAACGTTTTAATCATAAGTGTTATGGCTATGATGAGATCCACCTTTGCGGTTGCTCTTCGTAA

mRNA sequence

ATGTCTGGAAAGAAAAATCTAGGTAAAGCTCTCAAGGAATATATGGCACCCAAACCAAGCCAAGAAGATGCCAGAAAACATCTCAGTCGGCTTGATTCCAGAGGCTTCAATCTTCAACCGTTCGTCAGCGTTCGACGTACGGCAGCTCGTTTTCAGATGGCCACCATACGACAGTCTTCTCCGATTCCAGCGCACGGCTCCAATCGTCCGATCTTCAGCGCACAGTTGAGGACAGCCACAGTACGACAGTCTTCTCCTATTCTAGAATGCTATAGGAAATTTAAACCAGGAACTGTGGAACTCTTGGCAAAACAATGGAGGGTAGTAACCAATGGTAAGCAAGTTGCTGAGAACGGCCACCGTCTCACGCACAAGCAACGTTTTAATCATAAGTGTTATGGCTATGATGAGATCCACCTTTGCGGTTGCTCTTCGTAA

Coding sequence (CDS)

ATGTCTGGAAAGAAAAATCTAGGTAAAGCTCTCAAGGAATATATGGCACCCAAACCAAGCCAAGAAGATGCCAGAAAACATCTCAGTCGGCTTGATTCCAGAGGCTTCAATCTTCAACCGTTCGTCAGCGTTCGACGTACGGCAGCTCGTTTTCAGATGGCCACCATACGACAGTCTTCTCCGATTCCAGCGCACGGCTCCAATCGTCCGATCTTCAGCGCACAGTTGAGGACAGCCACAGTACGACAGTCTTCTCCTATTCTAGAATGCTATAGGAAATTTAAACCAGGAACTGTGGAACTCTTGGCAAAACAATGGAGGGTAGTAACCAATGGTAAGCAAGTTGCTGAGAACGGCCACCGTCTCACGCACAAGCAACGTTTTAATCATAAGTGTTATGGCTATGATGAGATCCACCTTTGCGGTTGCTCTTCGTAA

Protein sequence

MSGKKNLGKALKEYMAPKPSQEDARKHLSRLDSRGFNLQPFVSVRRTAARFQMATIRQSSPIPAHGSNRPIFSAQLRTATVRQSSPILECYRKFKPGTVELLAKQWRVVTNGKQVAENGHRLTHKQRFNHKCYGYDEIHLCGCSS*
Homology
[Close]
BLAST of CsaV3_5G023070 vs. NCBI nr
Match: KAE8648391.1 (hypothetical protein Csa_008179 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 3.1e-77
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MSGKKNLGKALKEYMAPKPSQEDARKHLSRLDSRGFNLQPFVSVRRTAARFQMATIRQSS 60
           MSGKKNLGKALKEYMAPKPSQEDARKHLSRLDSRGFNLQPFVSVRRTAARFQMATIRQSS
Sbjct: 1   MSGKKNLGKALKEYMAPKPSQEDARKHLSRLDSRGFNLQPFVSVRRTAARFQMATIRQSS 60

Query: 61  PIPAHGSNRPIFSAQLRTATVRQSSPILECYRKFKPGTVELLAKQWRVVTNGKQVAENGH 120
           PIPAHGSNRPIFSAQLRTATVRQSSPILECYRKFKPGTVELLAKQWRVVTNGKQVAENGH
Sbjct: 61  PIPAHGSNRPIFSAQLRTATVRQSSPILECYRKFKPGTVELLAKQWRVVTNGKQVAENGH 120

Query: 121 RLTHKQRFNHKCYGYDEIHLCGCSS 146
           RLTHKQRFNHKCYGYDEIHLCGCSS
Sbjct: 121 RLTHKQRFNHKCYGYDEIHLCGCSS 145

[Close]
BLAST of CsaV3_5G023070 vs. NCBI nr
Match: KAE8648010.1 (hypothetical protein Csa_021463, partial [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 5.4e-05
Identity = 25/30 (83.33%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 116 AENGHRLTHKQRFNHKCYGYDEIHLCGCSS 146
           AEN HRLTHKQ FN KCY YDEIHLC CSS
Sbjct: 15  AENSHRLTHKQCFNWKCYVYDEIHLCSCSS 44

The following BLAST results are available for this feature:
BLAST of CsaV3_5G023070 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648391.13.1e-77100.00hypothetical protein Csa_008179 [Cucumis sativus][more]
KAE8648010.15.4e-0583.33hypothetical protein Csa_021463, partial [Cucumis sativus][more]
BLAST of CsaV3_5G023070 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G023070 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G023070 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G023070.1CsaV3_5G023070.1mRNA