CsaV3_5G018770 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTTGGAATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCCAGACACAACTTCATAAAGACACGGAAGGAGCACCAATTGATGCTACGGAGTACAGAAGCATCATTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAG TTTGGAATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCCAGACACAACTTCATAAAGACACGGAAGGAGCACCAATTGATGCTACGGAGTACAGAAGCATCATTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAG TTTGGAATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCCAGACACAACTTCATAAAGACACGGAAGGAGCACCAATTGATGCTACGGAGTACAGAAGCATCATTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAG FGMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRYMERPTTMHYK Homology
BLAST of CsaV3_5G018770 vs. NCBI nr
Match: KAE8648316.1 (hypothetical protein Csa_004655, partial [Cucumis sativus]) HSP 1 Score: 152.9 bits (385), Expect = 1.0e-33 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. NCBI nr
Match: KAE8648201.1 (hypothetical protein Csa_018467, partial [Cucumis sativus]) HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32 Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. NCBI nr
Match: XP_031742485.1 (secreted RxLR effector protein 161-like [Cucumis sativus]) HSP 1 Score: 147.5 bits (371), Expect = 4.3e-32 Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. NCBI nr
Match: XP_031742070.1 (secreted RxLR effector protein 161-like [Cucumis sativus]) HSP 1 Score: 147.5 bits (371), Expect = 4.3e-32 Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. NCBI nr
Match: XP_031741734.1 (uncharacterized protein LOC116403928 [Cucumis sativus]) HSP 1 Score: 142.9 bits (359), Expect = 1.0e-30 Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 5.8e-08 Identity = 31/62 (50.00%), Postives = 37/62 (59.68%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 6.4e-07 Identity = 26/57 (45.61%), Postives = 33/57 (57.89%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 3.2e-06 Identity = 25/64 (39.06%), Postives = 35/64 (54.69%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2) HSP 1 Score: 44.3 bits (103), Expect = 6.7e-04 Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 43.9 bits (102), Expect = 8.7e-04 Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. ExPASy TrEMBL
Match: Q0J8A6 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=2 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23 Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. ExPASy TrEMBL
Match: B8BDZ6 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23 Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. ExPASy TrEMBL
Match: A0A0P0XB91 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23 Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. ExPASy TrEMBL
Match: A0A5K0VEQ6 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS1129 PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 1.8e-23 Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. ExPASy TrEMBL
Match: A0A6G1EJC3 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_014570 PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 6.7e-23 Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 52.0 bits (123), Expect = 2.3e-07 Identity = 24/67 (35.82%), Postives = 34/67 (50.75%), Query Frame = 0
BLAST of CsaV3_5G018770 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein ) HSP 1 Score: 52.0 bits (123), Expect = 2.3e-07 Identity = 25/64 (39.06%), Postives = 35/64 (54.69%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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