CsaV3_5G018720 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G018720
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 14270719 .. 14271888 (+)
RNA-Seq Expression	CsaV3_5G018720
Synteny	CsaV3_5G018720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGGATGCAGCGAGAGTGAAAGTGCCCGAGGAACGAGAGGATCTTCAAAAGGGTCCCAGCGGCGCTATTCACCACGTACCCACAATTTATTTTGGATACACCCACCAGTGGCGGCGGCGGTGAGGCTTCTCTTTCTCACTTCTTCCAGTTCCCCATCTAAGTTTCAGTTGATTTTTAACCTTATTTGCTTTTAGTTTTGCAATTTCTGCTGTTTCACTGAGACTTCTTTTCTCATTTCTGGTCACTCCTCATTGTCTTTTTCATCTCTTCTATGTTCTTATTTCATTAAGTGATGCTGATTTGATTTTTCTCCTTTTTCTTTCTGAAGTTCAGAAGAGGCAAGTATAACTGAGTTTTCCTGTTGGTTTTTGCTCATGATTCGTATTTAATTGTTTTGGTTTCACTGGAAATGGAACACACACACAAAAACACCCTTGTTTCATTCGGCATCCATTTGTAGAACCCAAATAAAACTTTGGTTTTCCTTTTGCTTTGGACTTAGGATTGGTGGAGTTCCCTGTTATTTTTATTTCTCTGTGAACAGAAATGGAAAGAAAAAATGTTTGTATCTCACTGGCATGCATGTGGTGTGTGTTACCCATCAAGGGTTCAAGGGTTCAAGGGTAAATTGAAACTAACCATACATTAGAGCCATTTTTGTGTATTTTCCTTTTAATTTGTACCGCTTGGAAACTTACCCATCACTAATGTCTTGTCACCCCTCTTGTGCAAGCTTTCTTTACCATTATTAAAGGCTACTCTTACTACAAGAGAAGAGGAGAAAACAAAAAGATGGCTTGCTGCCTGCTGGTTTTTCCCAGCATTTTTCTGACTTGATTTGATCTATCTTTCTCGTTTATTTGAATGTTTCCCCTGTTATTCATATTTGAATTTGGTGAGCTGTGTATTTCCAGTGCTTTCAAATTTCAAATAATAAAGGTTTATCTACAGTGAAAAGTGTTCTCAGTTTTTAAAAAATTTTGGTCTCCAGTTATTCTTGTTTGATGCCGTTGCAGTTTTTTTTTTTTTTAACATGTATTCACATGTGTATATCTCTGTGTGCATGCTCATGTCTAAATATTTCTGGTATGTTGTGATTGTAGGTTATAATGCCCAACTTAAGAATTGCATGGTGGATTTTTCATGAGATCGTTGATGGATGA

mRNA sequence

ATGGATGATGGATGCAGCGAGAGTGAAAGTGCCCGAGGAACGAGAGGATCTTCAAAAGGGTCCCAGCGGCGCTATTCACCACGTACCCACAATTTATTTTGGATACACCCACCAGTGGCGGCGGCGGTTATAATGCCCAACTTAAGAATTGCATGGTGGATTTTTCATGAGATCGTTGATGGATGA

Coding sequence (CDS)

ATGGATGATGGATGCAGCGAGAGTGAAAGTGCCCGAGGAACGAGAGGATCTTCAAAAGGGTCCCAGCGGCGCTATTCACCACGTACCCACAATTTATTTTGGATACACCCACCAGTGGCGGCGGCGGTTATAATGCCCAACTTAAGAATTGCATGGTGGATTTTTCATGAGATCGTTGATGGATGA

Protein sequence

MDDGCSESESARGTRGSSKGSQRRYSPRTHNLFWIHPPVAAAVIMPNLRIAWWIFHEIVDG*

Homology

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BLAST of CsaV3_5G018720 vs. NCBI nr
Match: KAE8648312.1 (hypothetical protein Csa_004668 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDDGCSESESARGTRGSSKGSQRRYSPRTHNLFWIHPPVAAAVIMPNLRIAWWIFHEIVD 60
          MDDGCSESESARGTRGSSKGSQRRYSPRTHNLFWIHPPVAAAVIMPNLRIAWWIFHEIVD
Sbjct: 1  MDDGCSESESARGTRGSSKGSQRRYSPRTHNLFWIHPPVAAAVIMPNLRIAWWIFHEIVD 60

Query: 61 G 62
          G
Sbjct: 61 G 61

The following BLAST results are available for this feature:

BLAST of CsaV3_5G018720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648312.1	1.6e-27	100.00	hypothetical protein Csa_004668 [Cucumis sativus]	[more]

BLAST of CsaV3_5G018720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G018720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G018720 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G018720.1	CsaV3_5G018720.1	mRNA