CsaV3_5G017530 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G017530
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 14070116 .. 14070473 (+)
RNA-Seq ExpressionCsaV3_5G017530
SyntenyCsaV3_5G017530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGGCCGACGTCGATCGCAGGTGGAGCGGCGGTTGTGAGCGGGGAGCGTGGCGGTTACTGGTTCACGCGGCGGCCTTGGCTTCGACGGAGACAGAACCGGCGGAGACGGCTGGGCAGCGGCGGAAGAGCAACGGCGCGGTCTGCAGATCTGGGCTTGGGCTGCGGCGGACTGCTTCGCGAACGGAGATGGAGAACGGAATGGAACCGGTTGCTGCGAACGGAAAGGAGAAGAAGACGGGTGGGGCGGCTGGGCTGCGGCTGGGACGCAGATCTGGACTGGGCAGCGGTCACGCGGCGGCCGACGGCTGCTGCGAACGGAAGAGAAGAGGAGAAGGGTCGCGGCGCTCGGCTTCAGTAG

mRNA sequence

TCGGCCGACGTCGATCGCAGGTGGAGCGGCGGTTGTGAGCGGGGAGCGTGGCGGTTACTGGTTCACGCGGCGGCCTTGGCTTCGACGGAGACAGAACCGGCGGAGACGGCTGGGCAGCGGCGGAAGAGCAACGGCGCGGTCTGCAGATCTGGGCTTGGGCTGCGGCGGACTGCTTCGCGAACGGAGATGGAGAACGGAATGGAACCGGTTGCTGCGAACGGAAAGGAGAAGAAGACGGGTGGGGCGGCTGGGCTGCGGCTGGGACGCAGATCTGGACTGGGCAGCGGTCACGCGGCGGCCGACGGCTGCTGCGAACGGAAGAGAAGAGGAGAAGGGTCGCGGCGCTCGGCTTCAGTAG

Coding sequence (CDS)

TCGGCCGACGTCGATCGCAGGTGGAGCGGCGGTTGTGAGCGGGGAGCGTGGCGGTTACTGGTTCACGCGGCGGCCTTGGCTTCGACGGAGACAGAACCGGCGGAGACGGCTGGGCAGCGGCGGAAGAGCAACGGCGCGGTCTGCAGATCTGGGCTTGGGCTGCGGCGGACTGCTTCGCGAACGGAGATGGAGAACGGAATGGAACCGGTTGCTGCGAACGGAAAGGAGAAGAAGACGGGTGGGGCGGCTGGGCTGCGGCTGGGACGCAGATCTGGACTGGGCAGCGGTCACGCGGCGGCCGACGGCTGCTGCGAACGGAAGAGAAGAGGAGAAGGGTCGCGGCGCTCGGCTTCAGTAG

Protein sequence

SADVDRRWSGGCERGAWRLLVHAAALASTETEPAETAGQRRKSNGAVCRSGLGLRRTASRTEMENGMEPVAANGKEKKTGGAAGLRLGRRSGLGSGHAAADGCCERKRRGEGSRRSASVX
Homology
BLAST of CsaV3_5G017530 vs. NCBI nr
Match: KAE8637196.1 (hypothetical protein CSA_019087, partial [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-07
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 0

Query: 10 GGCERGAWRLLVHAAALASTETEPAETAGQRRKSNGA----VCRSGLGLRRTASRT 62
          GGCER  WRLLVH AA AST+TEPAETAGQRRKSNG      C + L   R  +RT
Sbjct: 14 GGCERRTWRLLVHTAARASTKTEPAETAGQRRKSNGCSGGRSCGTDLDGGRKVTRT 69

BLAST of CsaV3_5G017530 vs. NCBI nr
Match: KGN52792.2 (hypothetical protein Csa_014984 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 7.6e-05
Identity = 47/109 (43.12%), Postives = 57/109 (52.29%), Query Frame = 0

Query: 21  VHAAALASTETEPAETAGQRRKSNGA----VCRSGLG-----LRRTASRTEMENGMEPVA 80
           VHAAALASTETEP ETAGQRRKSNG      C + L       R  ASR      +   A
Sbjct: 12  VHAAALASTETEPVETAGQRRKSNGGSGGRSCGTDLDGGRKVTRTAASRMGRNRKVTRTA 71

Query: 81  ANGKE-KKTGGAAGLRLGRRSGLGSGHAAADGCCERKRRGEGSRRSASV 120
           A+ KE  ++G  A   L   +  G+GH    GCC+ +   +  RR A V
Sbjct: 72  ASRKETNRSGNGAAASLMEMNRSGNGHLRCRGCCDAEAAAD--RRDADV 118

BLAST of CsaV3_5G017530 vs. NCBI nr
Match: KAE8652767.1 (hypothetical protein Csa_022880, partial [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-04
Identity = 39/80 (48.75%), Postives = 42/80 (52.50%), Query Frame = 0

Query: 10  GGCERGAWRLLVHAAALASTETEPAETAGQRRK---------SNGAVCRSGLGLRRTASR 69
           GGCE   WRLLVH AA AST+TEPAETAGQRRK         S G         R  ASR
Sbjct: 33  GGCEWRTWRLLVHMAARASTKTEPAETAGQRRKVLRYRSGRWSQGDAYGGRKVTRTAASR 92

Query: 70  TEMENGMEPV--AANGKEKK 79
           T       P     NG+EK+
Sbjct: 93  TGRWLQRRPAGFGRNGEEKR 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8637196.14.8e-0764.29hypothetical protein CSA_019087, partial [Cucumis sativus][more]
KGN52792.27.6e-0543.12hypothetical protein Csa_014984 [Cucumis sativus][more]
KAE8652767.13.8e-0448.75hypothetical protein Csa_022880, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G017530.1CsaV3_5G017530.1mRNA