CsaV3_5G017350 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G017350
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 13925986 .. 13926241 (-)
RNA-Seq Expression	CsaV3_5G017350
Synteny	CsaV3_5G017350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGGCATTACAATGCAGGGGGGAATGAATGGGAAAGGTCTAGGGTTGAAGATCCGAACAGAGAAACGACCATATTGGTGGAAGGAGAGAGGAAGAAGAGGAGGAGGAGGAGAATCAAGAGTTTATAGGCATATGTAGAGTGGAAGAGAGTGTAGAGATTTGGGATGATGGGTGTGGGAGGCAGAGGCACAGGCAAGCAGAGCCGCCATTAGTGGAAGAAGAAGAAGAAGAGAAGAAGAAGATTTGGAAATGA

mRNA sequence

ATGATAGGCATTACAATGCAGGGGGGAATGAATGGGAAAGGTCTAGGGTTGAAGATCCGAACAGAGAAACGACCATATTGGTGGAAGGAGAGAGGAAGAAGAGGAGGAGGAGGAGAATCAAGAGTTTATAGGCATATGCAGAGGCACAGGCAAGCAGAGCCGCCATTAGTGGAAGAAGAAGAAGAAGAGAAGAAGAAGATTTGGAAATGA

Coding sequence (CDS)

ATGATAGGCATTACAATGCAGGGGGGAATGAATGGGAAAGGTCTAGGGTTGAAGATCCGAACAGAGAAACGACCATATTGGTGGAAGGAGAGAGGAAGAAGAGGAGGAGGAGGAGAATCAAGAGTTTATAGGCATATGCAGAGGCACAGGCAAGCAGAGCCGCCATTAGTGGAAGAAGAAGAAGAAGAGAAGAAGAAGATTTGGAAATGA

Protein sequence

MIGITMQGGMNGKGLGLKIRTEKRPYWWKERGRRGGGGESRVYRHMQRHRQAEPPLVEEEEEEKKKIWK*

Homology

[Close]

BLAST of CsaV3_5G017350 vs. NCBI nr
Match: KGN49755.1 (hypothetical protein Csa_017805 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 6.2e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MIGITMQGGMNGKGLGLKIRTEKRPYWWKERGRRGGGGESRVYRHMQRHRQAEPPLVEEE 60
          MIGITMQGGMNGKGLGLKIRTEKRPYWWKERGRRGGGGESRVYRHMQRHRQAEPPLVEEE
Sbjct: 1  MIGITMQGGMNGKGLGLKIRTEKRPYWWKERGRRGGGGESRVYRHMQRHRQAEPPLVEEE 60

Query: 61 EEEKKKIWK 70
          EEEKKKIWK
Sbjct: 61 EEEKKKIWK 69

[Close]

BLAST of CsaV3_5G017350 vs. ExPASy TrEMBL
Match: A0A0A0KJ43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G107040 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.0e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MIGITMQGGMNGKGLGLKIRTEKRPYWWKERGRRGGGGESRVYRHMQRHRQAEPPLVEEE 60
          MIGITMQGGMNGKGLGLKIRTEKRPYWWKERGRRGGGGESRVYRHMQRHRQAEPPLVEEE
Sbjct: 1  MIGITMQGGMNGKGLGLKIRTEKRPYWWKERGRRGGGGESRVYRHMQRHRQAEPPLVEEE 60

Query: 61 EEEKKKIWK 70
          EEEKKKIWK
Sbjct: 61 EEEKKKIWK 69

The following BLAST results are available for this feature:

BLAST of CsaV3_5G017350 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49755.1	6.2e-31	100.00	hypothetical protein Csa_017805 [Cucumis sativus]	[more]

BLAST of CsaV3_5G017350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G017350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ43	3.0e-31	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G107040 PE=4 SV=1	[more]

BLAST of CsaV3_5G017350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G017350.1	CsaV3_5G017350.1	mRNA