CsaV3_5G017030 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G017030
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRibosomal protein S1
Locationchr5: 13597907 .. 13599436 (-)
RNA-Seq ExpressionCsaV3_5G017030
SyntenyCsaV3_5G017030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACATCTCGTCGGCGAGCCGTCAACTCCTATAATATCTCTTTCTACAATATCCAGTTCTTCCCGCTCTTGTTCTTTGATCCTCTCCTTACTCAAATTGCATTGAGCGTCCTCCGTAGCTTAATTAGGGAAGTTTTCGAACTATTTTCGGAGATAGGCTTTCTTCTAGTCTCCAGCCGGGATTCTCATATTTCATGGCCCGTGGCGAGTATTTTCCCTTGTTTGTAGAGGGACTCAATTCCCCACTCCTAGGTTCAGACACGCCCTAAGAGTTGAAAGCGCCTTATAGCTACCTAGAAGCTCAACCTATGCACACCTCCAGACCTTGAATTGGGCGCTTCGCTTACTATTTCAGTGAGAGGCTTCCGATCCTGAACTCCTGCACCTCATATCAGTTTTTGGCTCCTGGATACTTTCTCAACCACTAAAGCAAGAACTGCCTCAATGAAAAATCAAGCTCCAGATGAGTTGACCTATCCCTTAAACAAGTCCGGAGGACCAGTCTCGCCTTCAGTCCTATCCATATTAACCGGGGATTTTCATGAGAGATTGGGGGAGGCTTCTGCCTCCTTTACTAAGTGTGGGTAGTCTTGCTGGTATGTCCGGTGGAGCATTTCGCTCTCATTTAGTACGTCGAGGATTAAAAGGAGGTCTTTTTTACTTTTAGGAGGGAGAAGCGACAAATAGTTTCTACCGAGTTCCCCAACTACTGCTTAGCTTAGTAGTTCAACTCTTTCGACTAGGGTGAGGCTGCTGGATCCTTCTAATCAATAATAGGAAGAGGTGTCAGGTTCGGTTAATTACAGAAAGTCCGACTTCGTTCCATATGGATGGTCCTACGGATAAATCCTCCAGACTACTTCGGTTAATTACGGATGGTCCTACGAATAAATCACCTGGACCTTTCTTTCTTTGATGGATGGTCCTACGGATAAATCATGCGGACTACGGACTTCGGACCCTGGACCTTTCTTTGGCACTCCGACCCTGGACCTTTGTTTGATGGAATATTGACAAAGAATATTGCATCGAAGGGGCAAAGATCTATGGCCCACATAGCGGTCCTTCGAACTCCCAGAAAGAAGAAGAAGGAGCGGGAGGCGCAAAGAATATTGCTCGAATATTGAGGCGCAAAGAATTTGCGAAGAAGGACTATCCATTAGGGAGGAGGAAGGACGAAAAAAAAGCTTATCTTGACTCCCATCTATTTTGATTTTCTGATATGATTTCCAAGATCTAATTCGAGTTTTTTTCTTATGTAGTGTAAACGCCTTACAATCTTCAGTTTTACGCTTCAGGGAAGAAATGTTCATGGTGGATGCAGGACCTGGGACCCTCATCATTTGTATGCAAGATGAGCCTACAGGAGTTCCAATCAACCGAGCCGACAGGTTTGTGACCCACTCCGCGGTGGGATCCCTGGATCTAGTGGCCGGTGAATCACTTCTCAAAAAGAAAATTTTGGAGAGATTCTTCATCGATCTAGTGGCCGGCGAATCACTTCTCAAAGAGCGAGGTTCTCCAGGTTGA

mRNA sequence

ATGAAAAATCAAGCTCCAGATGAGTTGACCTATCCCTTAAACAAGTCCGGAGGACCAGTCTCGCCTTCAGTCCTATCCATATTAACCGGGGATTTTCATGAGAGATTGGGGGAGGCTTCTGCCTCCTTTACTAATGTAAACGCCTTACAATCTTCAGTTTTACGCTTCAGGGAAGAAATGTTCATGGTGGATGCAGGACCTGGGACCCTCATCATTTGTATGCAAGATGAGCCTACAGGAGTTCCAATCAACCGAGCCGACAGGTTTGTGACCCACTCCGCGGTGGGATCCCTGGATCTAGTGGCCGGTGAATCACTTCTCAAAAAGAAAATTTTGGAGAGATTCTTCATCGATCTAGTGGCCGGCGAATCACTTCTCAAAGAGCGAGGTTCTCCAGGTTGA

Coding sequence (CDS)

ATGAAAAATCAAGCTCCAGATGAGTTGACCTATCCCTTAAACAAGTCCGGAGGACCAGTCTCGCCTTCAGTCCTATCCATATTAACCGGGGATTTTCATGAGAGATTGGGGGAGGCTTCTGCCTCCTTTACTAATGTAAACGCCTTACAATCTTCAGTTTTACGCTTCAGGGAAGAAATGTTCATGGTGGATGCAGGACCTGGGACCCTCATCATTTGTATGCAAGATGAGCCTACAGGAGTTCCAATCAACCGAGCCGACAGGTTTGTGACCCACTCCGCGGTGGGATCCCTGGATCTAGTGGCCGGTGAATCACTTCTCAAAAAGAAAATTTTGGAGAGATTCTTCATCGATCTAGTGGCCGGCGAATCACTTCTCAAAGAGCGAGGTTCTCCAGGTTGA

Protein sequence

MKNQAPDELTYPLNKSGGPVSPSVLSILTGDFHERLGEASASFTNVNALQSSVLRFREEMFMVDAGPGTLIICMQDEPTGVPINRADRFVTHSAVGSLDLVAGESLLKKKILERFFIDLVAGESLLKERGSPG*
Homology
[Close]
BLAST of CsaV3_5G017030 vs. NCBI nr
Match: KAE8648273.1 (hypothetical protein Csa_017791 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-67
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MKNQAPDELTYPLNKSGGPVSPSVLSILTGDFHERLGEASASFTNVNALQSSVLRFREEM 60
           MKNQAPDELTYPLNKSGGPVSPSVLSILTGDFHERLGEASASFTNVNALQSSVLRFREEM
Sbjct: 1   MKNQAPDELTYPLNKSGGPVSPSVLSILTGDFHERLGEASASFTNVNALQSSVLRFREEM 60

Query: 61  FMVDAGPGTLIICMQDEPTGVPINRADRFVTHSAVGSLDLVAGESLLKKKILERFFIDLV 120
           FMVDAGPGTLIICMQDEPTGVPINRADRFVTHSAVGSLDLVAGESLLKKKILERFFIDLV
Sbjct: 61  FMVDAGPGTLIICMQDEPTGVPINRADRFVTHSAVGSLDLVAGESLLKKKILERFFIDLV 120

Query: 121 AGESLLKERGSPG 134
           AGESLLKERGSPG
Sbjct: 121 AGESLLKERGSPG 133

[Close]
BLAST of CsaV3_5G017030 vs. NCBI nr
Match: OIV89893.1 (hypothetical protein TanjilG_14031 [Lupinus angustifolius])

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29
Identity = 78/117 (66.67%), Postives = 87/117 (74.36%), Query Frame = 0 

Query: 15  KSGGPVSPSVLSILTGDFHERLGEASASFTNVNALQSSVLRFREEMFMVDAGPGTLIICM 74
           ++GG  S   L  L  + HE  G  S +F +  ALQS VLR  EEMF+VDAGPGT IICM
Sbjct: 196 RTGGEPSLIELYRLRDELHEG-GVQSDAFLSGKALQSEVLRLGEEMFLVDAGPGTAIICM 255

Query: 75  QDEPTGVPINRADRFVTHSAVGSLDLVAGESLLKKKILERFFIDLVAGESLLKERGS 132
           QDEPTGVPINRA RF     VGSLDLVAGESL+KKKILER FIDLVAGESL+KER +
Sbjct: 256 QDEPTGVPINRATRF--EKKVGSLDLVAGESLIKKKILERLFIDLVAGESLIKERAA 309

[Close]
BLAST of CsaV3_5G017030 vs. NCBI nr
Match: KAF1856882.1 (hypothetical protein Lal_00001777 [Lupinus albus])

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-28
Identity = 73/101 (72.28%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 31  DFHERLGEASASFTNVNALQSSVLRFREEMFMVDAGPGTLIICMQDEPTGVPINRADRFV 90
           + HE  G  S +F +  ALQS VLR  EEMF+VDAGPGT IICMQDEPTGVPINRA RF 
Sbjct: 216 ELHEG-GVQSDAFLSGKALQSEVLRLGEEMFLVDAGPGTAIICMQDEPTGVPINRATRF- 275

Query: 91  THSAVGSLDLVAGESLLKKKILERFFIDLVAGESLLKERGS 132
               VGSLDLVAGESL+KKKILER FIDLVAGESL+KER +
Sbjct: 276 -EKKVGSLDLVAGESLIKKKILERLFIDLVAGESLIKERAA 313

[Close]
BLAST of CsaV3_5G017030 vs. NCBI nr
Match: QCB20452.1 (ribosomal protein S1 [Actinidia chinensis] >QCD14084.1 ribosomal protein S1 [Actinidia arguta] >QCD14111.1 ribosomal protein S1 [Actinidia eriantha])

HSP 1 Score: 134.8 bits (338), Expect = 5.5e-28
Identity = 69/85 (81.18%), Postives = 76/85 (89.41%), Query Frame = 0 

Query: 47  NALQSSVLRFREEMFMVDAGPGTLIICMQDEPTGVPINRADRFVTHSAVGSLDLVAGESL 106
           NALQSSVLR REEMF+VDAGPGT  ICMQDEPTGVPINRA RF   + VGSLDLVAGESL
Sbjct: 23  NALQSSVLRLREEMFLVDAGPGTPRICMQDEPTGVPINRATRF--ENKVGSLDLVAGESL 82

Query: 107 LKKKILERFFIDLVAGESLLKERGS 132
           +K++ILERFFIDLVAGESL+KER +
Sbjct: 83  IKEQILERFFIDLVAGESLIKERAA 105

[Close]
BLAST of CsaV3_5G017030 vs. NCBI nr
Match: AXS77398.1 (ribosomal protein S1 [Fallopia multiflora])

HSP 1 Score: 134.4 bits (337), Expect = 7.1e-28
Identity = 68/85 (80.00%), Postives = 74/85 (87.06%), Query Frame = 0 

Query: 47  NALQSSVLRFREEMFMVDAGPGTLIICMQDEPTGVPINRADRFVTHSAVGSLDLVAGESL 106
           NALQS VLR +EEMF+VDAGPGT  ICMQDEPTGVPINRA RF   + VGSLDLVAGESL
Sbjct: 22  NALQSEVLRLKEEMFLVDAGPGTARICMQDEPTGVPINRATRF--ENKVGSLDLVAGESL 81

Query: 107 LKKKILERFFIDLVAGESLLKERGS 132
           +KKKILERFFIDLV GESL+KER +
Sbjct: 82  IKKKILERFFIDLVVGESLIKERAA 104

[Close]
BLAST of CsaV3_5G017030 vs. ExPASy TrEMBL
Match: A0A1J7FPE8 (Proton_antipo_M domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_14031 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.3e-30
Identity = 78/117 (66.67%), Postives = 87/117 (74.36%), Query Frame = 0 

Query: 15  KSGGPVSPSVLSILTGDFHERLGEASASFTNVNALQSSVLRFREEMFMVDAGPGTLIICM 74
           ++GG  S   L  L  + HE  G  S +F +  ALQS VLR  EEMF+VDAGPGT IICM
Sbjct: 196 RTGGEPSLIELYRLRDELHEG-GVQSDAFLSGKALQSEVLRLGEEMFLVDAGPGTAIICM 255

Query: 75  QDEPTGVPINRADRFVTHSAVGSLDLVAGESLLKKKILERFFIDLVAGESLLKERGS 132
           QDEPTGVPINRA RF     VGSLDLVAGESL+KKKILER FIDLVAGESL+KER +
Sbjct: 256 QDEPTGVPINRATRF--EKKVGSLDLVAGESLIKKKILERLFIDLVAGESLIKERAA 309

[Close]
BLAST of CsaV3_5G017030 vs. ExPASy TrEMBL
Match: A0A6A5LDZ3 (Proton_antipo_M domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00001777 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 9.1e-29
Identity = 73/101 (72.28%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 31  DFHERLGEASASFTNVNALQSSVLRFREEMFMVDAGPGTLIICMQDEPTGVPINRADRFV 90
           + HE  G  S +F +  ALQS VLR  EEMF+VDAGPGT IICMQDEPTGVPINRA RF 
Sbjct: 216 ELHEG-GVQSDAFLSGKALQSEVLRLGEEMFLVDAGPGTAIICMQDEPTGVPINRATRF- 275

Query: 91  THSAVGSLDLVAGESLLKKKILERFFIDLVAGESLLKERGS 132
               VGSLDLVAGESL+KKKILER FIDLVAGESL+KER +
Sbjct: 276 -EKKVGSLDLVAGESLIKKKILERLFIDLVAGESLIKERAA 313

[Close]
BLAST of CsaV3_5G017030 vs. ExPASy TrEMBL
Match: A0A4D6FU87 (Ribosomal protein S1 OS=Actinidia chinensis OX=3625 GN=rps1 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.6e-28
Identity = 69/85 (81.18%), Postives = 76/85 (89.41%), Query Frame = 0 

Query: 47  NALQSSVLRFREEMFMVDAGPGTLIICMQDEPTGVPINRADRFVTHSAVGSLDLVAGESL 106
           NALQSSVLR REEMF+VDAGPGT  ICMQDEPTGVPINRA RF   + VGSLDLVAGESL
Sbjct: 23  NALQSSVLRLREEMFLVDAGPGTPRICMQDEPTGVPINRATRF--ENKVGSLDLVAGESL 82

Query: 107 LKKKILERFFIDLVAGESLLKERGS 132
           +K++ILERFFIDLVAGESL+KER +
Sbjct: 83  IKEQILERFFIDLVAGESLIKERAA 105

[Close]
BLAST of CsaV3_5G017030 vs. ExPASy TrEMBL
Match: A0A4D6J5C9 (Ribosomal protein S1 OS=Actinidia eriantha OX=165200 GN=rps1 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.6e-28
Identity = 69/85 (81.18%), Postives = 76/85 (89.41%), Query Frame = 0 

Query: 47  NALQSSVLRFREEMFMVDAGPGTLIICMQDEPTGVPINRADRFVTHSAVGSLDLVAGESL 106
           NALQSSVLR REEMF+VDAGPGT  ICMQDEPTGVPINRA RF   + VGSLDLVAGESL
Sbjct: 23  NALQSSVLRLREEMFLVDAGPGTPRICMQDEPTGVPINRATRF--ENKVGSLDLVAGESL 82

Query: 107 LKKKILERFFIDLVAGESLLKERGS 132
           +K++ILERFFIDLVAGESL+KER +
Sbjct: 83  IKEQILERFFIDLVAGESLIKERAA 105

[Close]
BLAST of CsaV3_5G017030 vs. ExPASy TrEMBL
Match: A0A4D6J9G9 (Ribosomal protein S1 OS=Actinidia arguta OX=64478 GN=rps1 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.6e-28
Identity = 69/85 (81.18%), Postives = 76/85 (89.41%), Query Frame = 0 

Query: 47  NALQSSVLRFREEMFMVDAGPGTLIICMQDEPTGVPINRADRFVTHSAVGSLDLVAGESL 106
           NALQSSVLR REEMF+VDAGPGT  ICMQDEPTGVPINRA RF   + VGSLDLVAGESL
Sbjct: 23  NALQSSVLRLREEMFLVDAGPGTPRICMQDEPTGVPINRATRF--ENKVGSLDLVAGESL 82

Query: 107 LKKKILERFFIDLVAGESLLKERGS 132
           +K++ILERFFIDLVAGESL+KER +
Sbjct: 83  IKEQILERFFIDLVAGESLIKERAA 105

The following BLAST results are available for this feature:
BLAST of CsaV3_5G017030 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648273.12.1e-67100.00hypothetical protein Csa_017791 [Cucumis sativus][more]
OIV89893.11.3e-2966.67hypothetical protein TanjilG_14031 [Lupinus angustifolius][more]
KAF1856882.11.9e-2872.28hypothetical protein Lal_00001777 [Lupinus albus][more]
QCB20452.15.5e-2881.18ribosomal protein S1 [Actinidia chinensis] >QCD14084.1 ribosomal protein S1 [Act... [more]
AXS77398.17.1e-2880.00ribosomal protein S1 [Fallopia multiflora][more]
BLAST of CsaV3_5G017030 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G017030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1J7FPE86.3e-3066.67Proton_antipo_M domain-containing protein OS=Lupinus angustifolius OX=3871 GN=Ta... [more]
A0A6A5LDZ39.1e-2972.28Proton_antipo_M domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_000017... [more]
A0A4D6FU872.6e-2881.18Ribosomal protein S1 OS=Actinidia chinensis OX=3625 GN=rps1 PE=4 SV=1[more]
A0A4D6J5C92.6e-2881.18Ribosomal protein S1 OS=Actinidia eriantha OX=165200 GN=rps1 PE=4 SV=1[more]
A0A4D6J9G92.6e-2881.18Ribosomal protein S1 OS=Actinidia arguta OX=64478 GN=rps1 PE=4 SV=1[more]
BLAST of CsaV3_5G017030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G017030.1CsaV3_5G017030.1mRNA