CsaV3_5G016980 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G016980
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 13578002 .. 13578541 (+)
RNA-Seq ExpressionCsaV3_5G016980
SyntenyCsaV3_5G016980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACCTAAGTACACTAAGAACCTACAGCATCGTCACCGCTGCGTGGGAAGGTTAATTCTTCTAACTCTGGTATTATCGTTGAACAAGCAGTTCACATCCAACTGCCCGCATAATGGGGGAAGCTCGCTCGCTAACTTTGCTTTTCGGCCAAAATGCCGAAAAAAGGCTAAGGCCGAAGGAGGTCTACTCCTTCGCTTAAGGAAAAATTGCCCGATTGGATATATATCTTGGTGCAGAGAGAGGAAAGGATCACGGAAGCCTCAGTCTCAGTACGAAAGGGGCAAAAAGCTGGAAAAAGCATACTGGCTTCACCTTGCCCTAGGATGGGGTCCGCCCGATCTTTTAAGGCATAGGCTTAATACTGAGACGCACGGGAATATCCGGTCCAGGATGGATATTCAAGACAAGGATGAAGGCTCTCCGTCACGCAAGATGATTACAAGTCTTAGGAGTGAACTTCCGCTTTACCCCTTCCGGTATCAGGAAGCGAAGGGCAGAGAAAGCGAGCTAGAAAACATAAATCAAGGCGGTCGATGA

mRNA sequence

ATGCAACCTAAGTACACTAAGAACCTACAGCATCGTCACCGCTGCGTGGGAAGGTTAATTCTTCTAACTCTGGTATTATCGTTGAACAAGCAGTTCACATCCAACTGCCCGCATAATGGGGGAAGCTCGCTCGCTAACTTTGCTTTTCGGCCAAAATGCCGAAAAAAGGCTAAGGCCGAAGGAGGTCTACTCCTTCGCTTAAGGAAAAATTGCCCGATTGGATATATATCTTGGTGCAGAGAGAGGAAAGGATCACGGAAGCCTCAGTCTCAGTACGAAAGGGGCAAAAAGCTGGAAAAAGCATACTGGCTTCACCTTGCCCTAGGATGGGGTCCGCCCGATCTTTTAAGGCATAGGCTTAATACTGAGACGCACGGGAATATCCGGTCCAGGATGGATATTCAAGACAAGGATGAAGGCTCTCCGTCACGCAAGATGATTACAAGTCTTAGGAGTGAACTTCCGCTTTACCCCTTCCGGTATCAGGAAGCGAAGGGCAGAGAAAGCGAGCTAGAAAACATAAATCAAGGCGGTCGATGA

Coding sequence (CDS)

ATGCAACCTAAGTACACTAAGAACCTACAGCATCGTCACCGCTGCGTGGGAAGGTTAATTCTTCTAACTCTGGTATTATCGTTGAACAAGCAGTTCACATCCAACTGCCCGCATAATGGGGGAAGCTCGCTCGCTAACTTTGCTTTTCGGCCAAAATGCCGAAAAAAGGCTAAGGCCGAAGGAGGTCTACTCCTTCGCTTAAGGAAAAATTGCCCGATTGGATATATATCTTGGTGCAGAGAGAGGAAAGGATCACGGAAGCCTCAGTCTCAGTACGAAAGGGGCAAAAAGCTGGAAAAAGCATACTGGCTTCACCTTGCCCTAGGATGGGGTCCGCCCGATCTTTTAAGGCATAGGCTTAATACTGAGACGCACGGGAATATCCGGTCCAGGATGGATATTCAAGACAAGGATGAAGGCTCTCCGTCACGCAAGATGATTACAAGTCTTAGGAGTGAACTTCCGCTTTACCCCTTCCGGTATCAGGAAGCGAAGGGCAGAGAAAGCGAGCTAGAAAACATAAATCAAGGCGGTCGATGA

Protein sequence

MQPKYTKNLQHRHRCVGRLILLTLVLSLNKQFTSNCPHNGGSSLANFAFRPKCRKKAKAEGGLLLRLRKNCPIGYISWCRERKGSRKPQSQYERGKKLEKAYWLHLALGWGPPDLLRHRLNTETHGNIRSRMDIQDKDEGSPSRKMITSLRSELPLYPFRYQEAKGRESELENINQGGR*
Homology
[Close]
BLAST of CsaV3_5G016980 vs. NCBI nr
Match: KAE8648268.1 (hypothetical protein Csa_017818 [Cucumis sativus])

HSP 1 Score: 376.3 bits (965), Expect = 1.5e-100
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0 

Query: 1   MQPKYTKNLQHRHRCVGRLILLTLVLSLNKQFTSNCPHNGGSSLANFAFRPKCRKKAKAE 60
           MQPKYTKNLQHRHRCVGRLILLTLVLSLNKQFTSNCPHNGGSSLANFAFRPKCRKKAKAE
Sbjct: 1   MQPKYTKNLQHRHRCVGRLILLTLVLSLNKQFTSNCPHNGGSSLANFAFRPKCRKKAKAE 60

Query: 61  GGLLLRLRKNCPIGYISWCRERKGSRKPQSQYERGKKLEKAYWLHLALGWGPPDLLRHRL 120
           GGLLLRLRKNCPIGYISWCRERKGSRKPQSQYERGKKLEKAYWLHLALGWGPPDLLRHRL
Sbjct: 61  GGLLLRLRKNCPIGYISWCRERKGSRKPQSQYERGKKLEKAYWLHLALGWGPPDLLRHRL 120

Query: 121 NTETHGNIRSRMDIQDKDEGSPSRKMITSLRSELPLYPFRYQEAKGRESELENINQGGR 180
           NTETHGNIRSRMDIQDKDEGSPSRKMITSLRSELPLYPFRYQEAKGRESELENINQGGR
Sbjct: 121 NTETHGNIRSRMDIQDKDEGSPSRKMITSLRSELPLYPFRYQEAKGRESELENINQGGR 179

[Close]
BLAST of CsaV3_5G016980 vs. NCBI nr
Match: KAE8648260.1 (hypothetical protein Csa_023899, partial [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 4.6e-30
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 110 WGPPDLLRHRLNTETHGNIRSRMDIQDKDEGSPSRKMITSLRSELPLYPFRYQEAKGRES 169
           WGPPDLLRHRLN ETHG+IRSRMDIQDKDEGSPSRKMITSLRSELPLYPFRYQEAKGRES
Sbjct: 1   WGPPDLLRHRLNAETHGDIRSRMDIQDKDEGSPSRKMITSLRSELPLYPFRYQEAKGRES 60

Query: 170 ELENINQGGR 180
           E ENINQGGR
Sbjct: 61  ERENINQGGR 70

[Close]
BLAST of CsaV3_5G016980 vs. NCBI nr
Match: KAE8648259.1 (hypothetical protein Csa_018504, partial [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 5.5e-23
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1  MQPKYTKNLQHRHRCVGRLILLTLVLSLNKQFTSNCPHNGGSSLANFAFRPKCRKKAKAE 60
          MQ KYTKNLQHRHRCVGRLILLTLVLSLNKQFTS+CP +GGSSLANFA RPKCRKKAKAE
Sbjct: 1  MQSKYTKNLQHRHRCVGRLILLTLVLSLNKQFTSDCPRSGGSSLANFALRPKCRKKAKAE 60

Query: 61 G 62
          G
Sbjct: 61 G 61

[Close]
BLAST of CsaV3_5G016980 vs. NCBI nr
Match: KAE8648253.1 (hypothetical protein Csa_018473, partial [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 5.6e-20
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0 

Query: 1  MQPKYTKNLQHRHRCVGRLILLTLVLSLNKQFTSNCPHNGGSSLANFAFRPKCRKKAKAE 60
          MQ KYTKNLQHRH   GRLILLTLVLSLNKQFT +CP +GGSSLANFA RPKCRKKAKAE
Sbjct: 1  MQSKYTKNLQHRHAACGRLILLTLVLSLNKQFTFDCPRSGGSSLANFALRPKCRKKAKAE 60

Query: 61 G 62
          G
Sbjct: 61 G 61

The following BLAST results are available for this feature:
BLAST of CsaV3_5G016980 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648268.11.5e-100100.00hypothetical protein Csa_017818 [Cucumis sativus][more]
KAE8648260.14.6e-3095.71hypothetical protein Csa_023899, partial [Cucumis sativus][more]
KAE8648259.15.5e-2391.80hypothetical protein Csa_018504, partial [Cucumis sativus][more]
KAE8648253.15.6e-2085.25hypothetical protein Csa_018473, partial [Cucumis sativus][more]
BLAST of CsaV3_5G016980 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G016980 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G016980 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G016980.1CsaV3_5G016980.1mRNA