CsaV3_5G015870 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G015870
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 13435834 .. 13436896 (-)
RNA-Seq ExpressionCsaV3_5G015870
SyntenyCsaV3_5G015870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAACTTATTTCCCAAATTTTTTTCCCCAACCCTTTCCCTCTTTTCATTTTCCCTCCTTTTTCCTATTTTCTCTCACATGCTGCCTCTCTTCCCTTATCACACGCAACCTTCCGATTTTTTTCACACTAAAAAGCCCCCTCTTATTTTCTTCACGTCAGACGACCCTCCACCAAATTTCTTTTCTCGCCCCCCTCTTCTCACCGAACGTGTCCCCCTTCCCTTCCGATTTTCTTCTCACCGAAAAGCCCCCTTCCCCTTTGATTTTCTTCACGTGGAATGGCCCCCACCGAATTTCTTCACCACTGGAGTTCTTCTCGATCTCCCTTCTCCTCACTGGACACGCCCCCTTCTGATTTTCTTCTCACCGAAAAGCCGCCCCCCTCTGATTTTCTTCCCTTTTTCGTTCACTACTGAATGTTAGAGGATGAGAGTTTTTCTTTTTTGTTTTTTGAGTTCAATGTATTTGTTTTCTTTGATTGATTTCGTTGGTTTTTTATTCAGGGTGGTGAGAGTTCATCGATGATTTGGTTTCATTCAAAGAATTTGTTTTGATTTGCAGAATGGTAGGTGAAATTTTCACGTGAACAATATACACATTTCTATTCAATAATCTTCAAAATATTTGGTGTATAATTATTTTGTTCTTTTTGTCTTGAACCCAGATTCTCTGCAATAAATAGGTAAGCAATAGTGTCCTCTTGGTTTATTAGTGATTTAGTGGAGCTTGATAAATGTGAATGTTGTAAGAAGATCAAAGGAAGTTCGTTTTTTTGTCTCTCCCTTTACTCTTGTAATGTTTTTCTTTGCAGATGCGGGGAGGTGTTGAAGCACTTAACTCAGTTGAATAGGTACTCTTGTGTATTATGATCTGGGAAACTTGCTTAAGTTATACGGTATTCTTTAAGTTAATTTTTAACTGTTTTTGAGCATTAACAATATTTATTTAGTGTAGGTTTTCTAATTTATGTTTGTACTTAGTTTCATATAGGTTTAAATATTCATGTTTAGGTTTACAATATCCTCCTTACAATGTAGAATTTTTTACAAGGGGATTATTTTTTT

mRNA sequence

ATGCTGCCTCTCTTCCCTTATCACACGCAACCTTCCGATTTTTTTCACACTAAAAAGCCCCCTCTTATTTTCTTCACGTCAGACGACCCTCCACCAAATTTCTTTTCTCGCCCCCCTCTTCTCACCGAACGTGTCCCCCTTCCCTTCCGATTTTCTTCTCACCGAAAAGCCCCCTTCCCCTTTGATTTTCTTCACGTGGAATGGCCCCCACCGAATTTCTTCACCACTGGAGTTCTTCTCGATCTCCCTTCTCCTCACTGGACACGCCCCCTTCTGATTTTCTTCTCACCGAAAAGCCGCCCCCCTCTGATTTTCTTCCCTTTTTCGTTCACTACTGAATGGTGGTGA

Coding sequence (CDS)

ATGCTGCCTCTCTTCCCTTATCACACGCAACCTTCCGATTTTTTTCACACTAAAAAGCCCCCTCTTATTTTCTTCACGTCAGACGACCCTCCACCAAATTTCTTTTCTCGCCCCCCTCTTCTCACCGAACGTGTCCCCCTTCCCTTCCGATTTTCTTCTCACCGAAAAGCCCCCTTCCCCTTTGATTTTCTTCACGTGGAATGGCCCCCACCGAATTTCTTCACCACTGGAGTTCTTCTCGATCTCCCTTCTCCTCACTGGACACGCCCCCTTCTGATTTTCTTCTCACCGAAAAGCCGCCCCCCTCTGATTTTCTTCCCTTTTTCGTTCACTACTGAATGGTGGTGA

Protein sequence

MLPLFPYHTQPSDFFHTKKPPLIFFTSDDPPPNFFSRPPLLTERVPLPFRFSSHRKAPFPFDFLHVEWPPPNFFTTGVLLDLPSPHWTRPLLIFFSPKSRPPLIFFPFSFTTEWW*
Homology
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BLAST of CsaV3_5G015870 vs. NCBI nr
Match: KAE8648256.1 (hypothetical protein Csa_018368 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 3.1e-64
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MLPLFPYHTQPSDFFHTKKPPLIFFTSDDPPPNFFSRPPLLTERVPLPFRFSSHRKAPFP 60
           MLPLFPYHTQPSDFFHTKKPPLIFFTSDDPPPNFFSRPPLLTERVPLPFRFSSHRKAPFP
Sbjct: 1   MLPLFPYHTQPSDFFHTKKPPLIFFTSDDPPPNFFSRPPLLTERVPLPFRFSSHRKAPFP 60

Query: 61  FDFLHVEWPPPNFFTTGVLLDLPSPHWTRPLLIFFSPKSRPPLIFFPFSFTTEWW 116
           FDFLHVEWPPPNFFTTGVLLDLPSPHWTRPLLIFFSPKSRPPLIFFPFSFTTEWW
Sbjct: 61  FDFLHVEWPPPNFFTTGVLLDLPSPHWTRPLLIFFSPKSRPPLIFFPFSFTTEWW 115

The following BLAST results are available for this feature:
BLAST of CsaV3_5G015870 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648256.13.1e-64100.00hypothetical protein Csa_018368 [Cucumis sativus][more]
BLAST of CsaV3_5G015870 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G015870 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G015870 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G015870.1CsaV3_5G015870.1mRNA