CsaV3_5G015670 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G015670
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionC2 domain-containing protein
Locationchr5: 13085038 .. 13086909 (+)
RNA-Seq ExpressionCsaV3_5G015670
SyntenyCsaV3_5G015670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGTCAAGTTCTCCAGAACAGAGATTCTAGAGCTCATTTCAAAATATTTATATGGGGAGGATTTTGAAAATGTATATGGAGTTGAAGTTGCAAATCATATCTTGCTTGATAGAATCAAGGGTGGAGCTATCCATCTATCTTCAAGTTCAACCCTATTTTTCTTCTTTGGTTGACATTTGTGGACTCCAGTTTTTAAGCGTATCATCCAAATTTCCATCAATGTCAACTTGAAAGTGCAAAGCTCTCCTATTTTGACTTGAAATAACTTCTTGAATCTCTCGTGGCCACGGGTTCAATTCTATTCTTGTAGCTTTAAATAAATTCCAAGGCTGGAAGCTGATTTTTAAAATGCTGAAAAGCTTCAAGTCAGAATGACTATGCGATTTGGTTTCAGATCAGAATAAGGTGGAAAAGAATCTGTCAGGAGGTCCTGTACGATCTCAAGAAGAGGAGTCAGTTACCTATGCTGAAAAGGTTAAGGCATTAAGAAATATCCCTGTTTCAGACCTGAAAAATCAAAGCATACAGAAAAAGTTGATTATTAAGAATCCAAGAGCCTTTTGAGCAGACTTCCACAAATTATGGGTGGTCACACGTCTTTTTGAGTTCAATGGTCGGGATTTAAAGATATGCTATAATCGTACTGTCAATCAGAGGTATTCATCAATCCAGTATTTGCAGAGAATTCTTTGATTGATTTTGATCAAGGTACATTAGATGATCTTATAGAGCAACCTGGGAAATGGCAAGAGTTTGGCGCTTTTCACTTAAAGTTCATTGTAGACCTTTGTATGCAAAAGGTTATGGTGGTTGGCTCTCGATCAAGAACCTACCTCTAGATTACTGGAACAATCAAACTTTTTAGGTCATTGGGACTTACTTTGGGGGCTTAGTAGACATTTCCAGGGAAACATTGAATTTTTTAAATGTTTCTGAAGCCAAAATACAAGTTAAAGAGAATCTATGTGGTTCCATTGATATTTCTTCTCTGGATCCTCCTAGCATAGCCATAGGGGAGCTACTTTTTTGTGATTTTTCAAACCCAGTTGATGTTAAATTAAATCAAGTTATGCAGGATGAAGAGGTTGAACTTGGCAGAAAAGTTGCGGCCCCAATTTGCCAAAAGGCCTTATGTCAAATCAGAAATTTTCAACAATTCAAAGTCTCAGAAACTATCAGAAAATATTCAGAAGTTGTTGGCCAGCTCTTCCATTGTCTCATTCCATCAATCTTTGGTCCCTTTGAATCAGAGAGTTATCTCCAAGATCGGAGAGAAGCCAGAAGGCCAGACCCTTTTGTTACGAGTTCAAACATCCATGAGTCGCTTGGTTTTTCTGCTTTCATTTAAGTTCTGCCGCAATAAATTAAATCCCAAAGCAGCACAAAGGTCTTCCCCGATCTCTGAAGCTTCAGATTTCCATGTTTGCATTATTTCACCAGGCTGTACCAAAGCAGCGCAAAGGTCTTCCTCAACTTCTACTATGCAAGAGAAAGCTTCCAATTCAGGCATTAATGATAAAGGCATTTCATTGAATGGTGATGGTCCCACTTTTAGAAATTCATCGGACAAATCTGGAGAGTCTGATTTAAAGAAGAGAAAAAGAATTTCAGTCTTAAGTTTAGCAAAGCCGACAATGGAGAAGAGGAAGCTTTTAAGGAGGAAAGAGAAGATTCCAACCAAGACTACCTCATTGCTCTTTGAAGCTTCTGCCTTGCTAGTGACCTCAAATTTTCCCCCCAAAAACCCCATCAATTTTGGTTTCCTCCTCCCAATCTCTTTCTTCCTCGGCAAGATTTGGATCAAGATCAAGGCCCAAAAGACTTGTAAAAGCTCGAGTTTACCCTCACCTCTTCAAACCGTTTCCTAA

mRNA sequence

ATGAGAGTCAAGTTCTCCAGAACAGAGATTCTAGAGCTCATTTCAAAATATTTATATGGGGAGGATTTTGAAAATGTATATGGAGTTGAAGTTGCAAATCATATCTTGCTTGATAGAATCAAGGGTGGAGCTATCCATCTATCTTCAAATCAGAATAAGGTGGAAAAGAATCTGTCAGGAGGTCCTGTACGATCTCAAGAAGAGGAGTCAGTTACCTATGCTGAAAAGGTTAAGGCATTAAGAAATATCCCTGTTTCAGACCTGAAAAATCAAAGCATACAGAAAAAGATGAAGAGGTTGAACTTGGCAGAAAAGTTGCGGCCCCAATTTGCCAAAAGGCCTTATGTCAAATCAGAAATTTTCAACAATTCAAAGTCTCAGAAACTATCAGAAAATATTCAGAAGTTGTTGGCCAGCTCTTCCATTGTCTCATTCCATCAATCTTTGGTCCCTTTGAATCAGAGAGTTATCTCCAAGATCGGAGAGAAGCCAGAAGGCCAGACCCTTTTGTTACGAGTTCAAACATCCATGAGTCGCTTGGTTTTTCTGCTTTCATTTAAGTTCTGCCGCAATAAATTAAATCCCAAAGCAGCACAAAGGTCTTCCCCGATCTCTGAAGCTTCAGATTTCCATGTTTGCATTATTTCACCAGGCTGTACCAAAGCAGCGCAAAGGTCTTCCTCAACTTCTACTATGCAAGAGAAAGCTTCCAATTCAGGCATTAATGATAAAGGCATTTCATTGAATGGTGATGGTCCCACTTTTAGAAATTCATCGGACAAATCTGGAGAGTCTGATTTAAAGAAGAGAAAAAGAATTTCAGTCTTAAGTTTAGCAAAGCCGACAATGGAGAAGAGGAAGCTTTTAAGGAGGAAAGAGAAGATTCCAACCAAGACTACCTCATTGCTCTTTGAAGCTTCTGCCTTGCTAGTGACCTCAAATTTTCCCCCCAAAAACCCCATCAATTTTGGTTTCCTCCTCCCAATCTCTTTCTTCCTCGGCAAGATTTGGATCAAGATCAAGGCCCAAAAGACTTGTAAAAGCTCGAGTTTACCCTCACCTCTTCAAACCGTTTCCTAA

Coding sequence (CDS)

ATGAGAGTCAAGTTCTCCAGAACAGAGATTCTAGAGCTCATTTCAAAATATTTATATGGGGAGGATTTTGAAAATGTATATGGAGTTGAAGTTGCAAATCATATCTTGCTTGATAGAATCAAGGGTGGAGCTATCCATCTATCTTCAAATCAGAATAAGGTGGAAAAGAATCTGTCAGGAGGTCCTGTACGATCTCAAGAAGAGGAGTCAGTTACCTATGCTGAAAAGGTTAAGGCATTAAGAAATATCCCTGTTTCAGACCTGAAAAATCAAAGCATACAGAAAAAGATGAAGAGGTTGAACTTGGCAGAAAAGTTGCGGCCCCAATTTGCCAAAAGGCCTTATGTCAAATCAGAAATTTTCAACAATTCAAAGTCTCAGAAACTATCAGAAAATATTCAGAAGTTGTTGGCCAGCTCTTCCATTGTCTCATTCCATCAATCTTTGGTCCCTTTGAATCAGAGAGTTATCTCCAAGATCGGAGAGAAGCCAGAAGGCCAGACCCTTTTGTTACGAGTTCAAACATCCATGAGTCGCTTGGTTTTTCTGCTTTCATTTAAGTTCTGCCGCAATAAATTAAATCCCAAAGCAGCACAAAGGTCTTCCCCGATCTCTGAAGCTTCAGATTTCCATGTTTGCATTATTTCACCAGGCTGTACCAAAGCAGCGCAAAGGTCTTCCTCAACTTCTACTATGCAAGAGAAAGCTTCCAATTCAGGCATTAATGATAAAGGCATTTCATTGAATGGTGATGGTCCCACTTTTAGAAATTCATCGGACAAATCTGGAGAGTCTGATTTAAAGAAGAGAAAAAGAATTTCAGTCTTAAGTTTAGCAAAGCCGACAATGGAGAAGAGGAAGCTTTTAAGGAGGAAAGAGAAGATTCCAACCAAGACTACCTCATTGCTCTTTGAAGCTTCTGCCTTGCTAGTGACCTCAAATTTTCCCCCCAAAAACCCCATCAATTTTGGTTTCCTCCTCCCAATCTCTTTCTTCCTCGGCAAGATTTGGATCAAGATCAAGGCCCAAAAGACTTGTAAAAGCTCGAGTTTACCCTCACCTCTTCAAACCGTTTCCTAA

Protein sequence

MRVKFSRTEILELISKYLYGEDFENVYGVEVANHILLDRIKGGAIHLSSNQNKVEKNLSGGPVRSQEEESVTYAEKVKALRNIPVSDLKNQSIQKKMKRLNLAEKLRPQFAKRPYVKSEIFNNSKSQKLSENIQKLLASSSIVSFHQSLVPLNQRVISKIGEKPEGQTLLLRVQTSMSRLVFLLSFKFCRNKLNPKAAQRSSPISEASDFHVCIISPGCTKAAQRSSSTSTMQEKASNSGINDKGISLNGDGPTFRNSSDKSGESDLKKRKRISVLSLAKPTMEKRKLLRRKEKIPTKTTSLLFEASALLVTSNFPPKNPINFGFLLPISFFLGKIWIKIKAQKTCKSSSLPSPLQTVS*
Homology
[Close]
BLAST of CsaV3_5G015670 vs. NCBI nr
Match: KAE8648244.1 (hypothetical protein Csa_018339 [Cucumis sativus])

HSP 1 Score: 674.9 bits (1740), Expect = 3.9e-190
Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 0 

Query: 1   MRVKFSRTEILELISKYLYGEDFENVYGVEVANHILLDRIKGGAIHLSSNQNKVEKNLSG 60
           MRVKFSRTEILELISKYLYGEDFENVYGVEVANHILLDRIKGGAIHLSSNQNKVEKNLSG
Sbjct: 1   MRVKFSRTEILELISKYLYGEDFENVYGVEVANHILLDRIKGGAIHLSSNQNKVEKNLSG 60

Query: 61  GPVRSQEEESVTYAEKVKALRNIPVSDLKNQSIQKKMKRLNLAEKLRPQFAKRPYVKSEI 120
           GPVRSQEEESVTYAEKVKALRNIPVSDLKNQSIQKKMKRLNLAEKLRPQFAKRPYVKSEI
Sbjct: 61  GPVRSQEEESVTYAEKVKALRNIPVSDLKNQSIQKKMKRLNLAEKLRPQFAKRPYVKSEI 120

Query: 121 FNNSKSQKLSENIQKLLASSSIVSFHQSLVPLNQRVISKIGEKPEGQTLLLRVQTSMSRL 180
           FNNSKSQKLSENIQKLLASSSIVSFHQSLVPLNQRVISKIGEKPEGQTLLLRVQTSMSRL
Sbjct: 121 FNNSKSQKLSENIQKLLASSSIVSFHQSLVPLNQRVISKIGEKPEGQTLLLRVQTSMSRL 180

Query: 181 VFLLSFKFCRNKLNPKAAQRSSPISEASDFHVCIISPGCTKAAQRSSSTSTMQEKASNSG 240
           VFLLSFKFCRNKLNPKAAQRSSPISEASDFHVCIISPGCTKAAQRSSSTSTMQEKASNSG
Sbjct: 181 VFLLSFKFCRNKLNPKAAQRSSPISEASDFHVCIISPGCTKAAQRSSSTSTMQEKASNSG 240

Query: 241 INDKGISLNGDGPTFRNSSDKSGESDLKKRKRISVLSLAKPTMEKRKLLRRKEKIPTKTT 300
           INDKGISLNGDGPTFRNSSDKSGESDLKKRKRISVLSLAKPTMEKRKLLRRKEKIPTKTT
Sbjct: 241 INDKGISLNGDGPTFRNSSDKSGESDLKKRKRISVLSLAKPTMEKRKLLRRKEKIPTKTT 300

Query: 301 SLLFEASALLVTSNFPPKNPINFGFLLPISFFLGKIWIKIKAQKTCKSSSLPSPLQTVS 360
           SLLFEASALLVTSNFPPKNPINFGFLLPISFFLGKIWIKIKAQKTCKSSSLPSPLQTVS
Sbjct: 301 SLLFEASALLVTSNFPPKNPINFGFLLPISFFLGKIWIKIKAQKTCKSSSLPSPLQTVS 359

[Close]
BLAST of CsaV3_5G015670 vs. NCBI nr
Match: KAA0054135.1 (hypothetical protein E6C27_scaffold131G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 8.6e-20
Identity = 94/231 (40.69%), Postives = 117/231 (50.65%), Query Frame = 0 

Query: 68  EESVTYAEKVKALRNIPVSDLKNQSIQKKMKRLNLAEKLRPQFAKRPYVKSEIFNNSKSQ 127
           +ESV++AEKVKALRNIPV DLK ++ +  +  L  AE     F  +  +   I    K Q
Sbjct: 45  KESVSFAEKVKALRNIPVPDLKIKAHKVLINPL-FAENALTDF-DQGTLDDLIEQPGKWQ 104

Query: 128 KLSENIQKLLASSSIV---------------------------SFHQSLVPLNQRVISKI 187
           +      K +    +                            +F    V L ++V   I
Sbjct: 105 EFGAFYLKFMKWDKLFCCRPLYAKGYGGWLSIKNLPLDYWNNQTFEDEEVELARKVADPI 164

Query: 188 GEKPEGQTLLLRVQTSMSRLVFLLSFKFCR---------NKLNPKAAQRSSPISEASDFH 247
             K     LL +++      V     K+           + +N  A QRSSPIS+ASD H
Sbjct: 165 CRK-----LLCQIRKFQQFKVLETIGKYSEVVGQPLPLSHSINLWAVQRSSPISKASDSH 224

Query: 248 VCIISPGCTKAAQRSSSTSTMQEKASNSGINDKGISLNGDGPTFRNSSDKS 263
           V IISPGCTKA QRSS  STMQEKASNSGINDKGISLNGDGPTF NSSDK+
Sbjct: 225 VYIISPGCTKATQRSSPISTMQEKASNSGINDKGISLNGDGPTFGNSSDKA 268

[Close]
BLAST of CsaV3_5G015670 vs. ExPASy TrEMBL
Match: A0A0A0KMR3 (C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G077210 PE=4 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 5.7e-126
Identity = 258/309 (83.50%), Postives = 258/309 (83.50%), Query Frame = 0 

Query: 51  QNKVEKNLSGGPVRSQEEESVTYAEKVKALRNIPVSDLKNQSIQKKMKRLNLAEKLRPQF 110
           QNKVEKNLSGGPVRSQEEESVTYAEK                                  
Sbjct: 194 QNKVEKNLSGGPVRSQEEESVTYAEK---------------------------------- 253

Query: 111 AKRPYVKSEIFNNSKSQKLSENIQKLLASSSIVSFHQSLVPLNQRVISKIGEKPEGQTLL 170
                            KLSENIQKLLASSSIVSFHQSLVPLNQRVISKIGEKPEGQTLL
Sbjct: 254 -----------------KLSENIQKLLASSSIVSFHQSLVPLNQRVISKIGEKPEGQTLL 313

Query: 171 LRVQTSMSRLVFLLSFKFCRNKLNPKAAQRSSPISEASDFHVCIISPGCTKAAQRSSSTS 230
           LRVQTSMSRLVFLLSFKFCRNKLNPKAAQRSSPISEASDFHVCIISPGCTKAAQRSSSTS
Sbjct: 314 LRVQTSMSRLVFLLSFKFCRNKLNPKAAQRSSPISEASDFHVCIISPGCTKAAQRSSSTS 373

Query: 231 TMQEKASNSGINDKGISLNGDGPTFRNSSDKSGESDLKKRKRISVLSLAKPTMEKRKLLR 290
           TMQEKASNSGINDKGISLNGDGPTFRNSSDKSGESDLKKRKRISVLSLAKPTMEKRKLLR
Sbjct: 374 TMQEKASNSGINDKGISLNGDGPTFRNSSDKSGESDLKKRKRISVLSLAKPTMEKRKLLR 433

Query: 291 RKEKIPTKTTSLLFEASALLVTSNFPPKNPINFGFLLPISFFLGKIWIKIKAQKTCKSSS 350
           RKEKIPTKTTSLLFEASALLVTSNFPPKNPINFGFLLPISFFLGKIWIKIKAQKTCKSSS
Sbjct: 434 RKEKIPTKTTSLLFEASALLVTSNFPPKNPINFGFLLPISFFLGKIWIKIKAQKTCKSSS 451

Query: 351 LPSPLQTVS 360
           LPSPLQTVS
Sbjct: 494 LPSPLQTVS 451

[Close]
BLAST of CsaV3_5G015670 vs. ExPASy TrEMBL
Match: A0A5A7UK83 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00510 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.2e-20
Identity = 94/231 (40.69%), Postives = 117/231 (50.65%), Query Frame = 0 

Query: 68  EESVTYAEKVKALRNIPVSDLKNQSIQKKMKRLNLAEKLRPQFAKRPYVKSEIFNNSKSQ 127
           +ESV++AEKVKALRNIPV DLK ++ +  +  L  AE     F  +  +   I    K Q
Sbjct: 45  KESVSFAEKVKALRNIPVPDLKIKAHKVLINPL-FAENALTDF-DQGTLDDLIEQPGKWQ 104

Query: 128 KLSENIQKLLASSSIV---------------------------SFHQSLVPLNQRVISKI 187
           +      K +    +                            +F    V L ++V   I
Sbjct: 105 EFGAFYLKFMKWDKLFCCRPLYAKGYGGWLSIKNLPLDYWNNQTFEDEEVELARKVADPI 164

Query: 188 GEKPEGQTLLLRVQTSMSRLVFLLSFKFCR---------NKLNPKAAQRSSPISEASDFH 247
             K     LL +++      V     K+           + +N  A QRSSPIS+ASD H
Sbjct: 165 CRK-----LLCQIRKFQQFKVLETIGKYSEVVGQPLPLSHSINLWAVQRSSPISKASDSH 224

Query: 248 VCIISPGCTKAAQRSSSTSTMQEKASNSGINDKGISLNGDGPTFRNSSDKS 263
           V IISPGCTKA QRSS  STMQEKASNSGINDKGISLNGDGPTF NSSDK+
Sbjct: 225 VYIISPGCTKATQRSSPISTMQEKASNSGINDKGISLNGDGPTFGNSSDKA 268

The following BLAST results are available for this feature:
BLAST of CsaV3_5G015670 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648244.13.9e-190100.00hypothetical protein Csa_018339 [Cucumis sativus][more]
KAA0054135.18.6e-2040.69hypothetical protein E6C27_scaffold131G00510 [Cucumis melo var. makuwa][more]
BLAST of CsaV3_5G015670 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G015670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMR35.7e-12683.50C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G077210 PE=4 SV=... [more]
A0A5A7UK834.2e-2040.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CsaV3_5G015670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..268
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..260

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G015670.1CsaV3_5G015670.1mRNA