CsaV3_5G015110 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CCCACACTTGAAGAGAAGATTGTTCGATGGCAACCTAAAGACCATGAGTTGAGAAGGTTGGCCAAGAAAGTAAGGTGTGAAAGTGGATCAGACTACACGTTTAGAAATCACGACATGTTGGTAAAAGACAAAAGACTATGCGTCCCATAA CCCACACTTGAAGAGAAGATTGTTCGATGGCAACCTAAAGACCATGAGTTGAGAAGGTTGGCCAAGAAAGTAAGGTGTGAAAGTGGATCAGACTACACGTTTAGAAATCACGACATGTTGGTAAAAGACAAAAGACTATGCGTCCCATAA CCCACACTTGAAGAGAAGATTGTTCGATGGCAACCTAAAGACCATGAGTTGAGAAGGTTGGCCAAGAAAGTAAGGTGTGAAAGTGGATCAGACTACACGTTTAGAAATCACGACATGTTGGTAAAAGACAAAAGACTATGCGTCCCATAA PTLEEKIVRWQPKDHELRRLAKKVRCESGSDYTFRNHDMLVKDKRLCVP* Homology
BLAST of CsaV3_5G015110 vs. NCBI nr
Match: KAE8648211.1 (hypothetical protein Csa_018380, partial [Cucumis sativus]) HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20 Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0
BLAST of CsaV3_5G015110 vs. NCBI nr
Match: KAA0047015.1 (hypothetical protein E6C27_scaffold230G002170 [Cucumis melo var. makuwa] >TYK04768.1 hypothetical protein E5676_scaffold68G00720 [Cucumis melo var. makuwa]) HSP 1 Score: 64.3 bits (155), Expect = 3.4e-07 Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 0
BLAST of CsaV3_5G015110 vs. NCBI nr
Match: KAA0036590.1 (polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06 Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0
BLAST of CsaV3_5G015110 vs. NCBI nr
Match: TYK22589.1 (hypothetical protein E5676_scaffold195G00060 [Cucumis melo var. makuwa]) HSP 1 Score: 60.1 bits (144), Expect = 6.4e-06 Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0
BLAST of CsaV3_5G015110 vs. NCBI nr
Match: KAA0025335.1 (uncharacterized protein E6C27_scaffold1204G00180 [Cucumis melo var. makuwa] >TYK06459.1 uncharacterized protein E5676_scaffold718G00170 [Cucumis melo var. makuwa]) HSP 1 Score: 60.1 bits (144), Expect = 6.4e-06 Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0
BLAST of CsaV3_5G015110 vs. ExPASy TrEMBL
Match: A0A5A7U039 (RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00720 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07 Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 0
BLAST of CsaV3_5G015110 vs. ExPASy TrEMBL
Match: A0A5A7SZR3 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001060 PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06 Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0
BLAST of CsaV3_5G015110 vs. ExPASy TrEMBL
Match: A0A5A7SLJ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold718G00170 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 3.1e-06 Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0
BLAST of CsaV3_5G015110 vs. ExPASy TrEMBL
Match: A0A5A7SJK7 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001530 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 3.1e-06 Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0
BLAST of CsaV3_5G015110 vs. ExPASy TrEMBL
Match: A0A5D3DH41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00060 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 3.1e-06 Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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