CsaV3_5G015110 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G015110
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionPolyprotein
Locationchr5: 12304259 .. 12304408 (-)
RNA-Seq ExpressionCsaV3_5G015110
SyntenyCsaV3_5G015110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCACACTTGAAGAGAAGATTGTTCGATGGCAACCTAAAGACCATGAGTTGAGAAGGTTGGCCAAGAAAGTAAGGTGTGAAAGTGGATCAGACTACACGTTTAGAAATCACGACATGTTGGTAAAAGACAAAAGACTATGCGTCCCATAA

mRNA sequence

CCCACACTTGAAGAGAAGATTGTTCGATGGCAACCTAAAGACCATGAGTTGAGAAGGTTGGCCAAGAAAGTAAGGTGTGAAAGTGGATCAGACTACACGTTTAGAAATCACGACATGTTGGTAAAAGACAAAAGACTATGCGTCCCATAA

Coding sequence (CDS)

CCCACACTTGAAGAGAAGATTGTTCGATGGCAACCTAAAGACCATGAGTTGAGAAGGTTGGCCAAGAAAGTAAGGTGTGAAAGTGGATCAGACTACACGTTTAGAAATCACGACATGTTGGTAAAAGACAAAAGACTATGCGTCCCATAA

Protein sequence

PTLEEKIVRWQPKDHELRRLAKKVRCESGSDYTFRNHDMLVKDKRLCVP*
Homology
BLAST of CsaV3_5G015110 vs. NCBI nr
Match: KAE8648211.1 (hypothetical protein Csa_018380, partial [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  PTLEEKIVRWQPKDHELRRLAKKVRCESGSDYTFRNHDMLVKDKRLCVP 50
          PTLEEKIVRWQPKDHELRRLAKKVRCESGSDYTFRNHDMLVKDKRLCVP
Sbjct: 1  PTLEEKIVRWQPKDHELRRLAKKVRCESGSDYTFRNHDMLVKDKRLCVP 49

BLAST of CsaV3_5G015110 vs. NCBI nr
Match: KAA0047015.1 (hypothetical protein E6C27_scaffold230G002170 [Cucumis melo var. makuwa] >TYK04768.1 hypothetical protein E5676_scaffold68G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-07
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 1   PTLEEKIVRWQPKDHELRRLAKKVRCESGSDYTFRNHDMLVKDKRLCVP 50
           P LEE+IV+ QP+D  LR++ K+VRC+  SDY FR+   L+K++RLCVP
Sbjct: 85  PALEEEIVKMQPEDPTLRKMGKEVRCKRWSDYMFRSDRALIKERRLCVP 133

BLAST of CsaV3_5G015110 vs. NCBI nr
Match: KAA0036590.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 2   TLEEKIVRWQPKDHELRRLAKKVRCESGSDYTFRNHDMLVKDKRLCVP 50
           T EE+IVR Q KD E R++A++V+CE  SDY FR+ D L+K KRLC P
Sbjct: 68  THEEEIVRSQLKDPEFRKMAEEVKCERRSDYAFRDGDALLKHKRLCAP 115

BLAST of CsaV3_5G015110 vs. NCBI nr
Match: TYK22589.1 (hypothetical protein E5676_scaffold195G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 6.4e-06
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0

Query: 1   PTLEEKIVRWQPKDHELRRLAKKVRCESGSDYTFRNHDMLVKDKRLCVP 50
           PTLE++IV+ Q +D  LR+LAK+VRCE  SDY FR+    +K+ RLCVP
Sbjct: 75  PTLEKEIVKSQLEDPPLRKLAKEVRCERRSDYIFRSDGASLKEMRLCVP 123

BLAST of CsaV3_5G015110 vs. NCBI nr
Match: KAA0025335.1 (uncharacterized protein E6C27_scaffold1204G00180 [Cucumis melo var. makuwa] >TYK06459.1 uncharacterized protein E5676_scaffold718G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 6.4e-06
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 1   PTLEEKIVRWQPKDHELRRLAKKVRCESGSDYTFRNHDMLVKDKRLCV 49
           P L+E+IVR +P D +LR+L ++VRC+  SDY FR    L+KDKRLCV
Sbjct: 83  PILKEEIVRSRPVDPKLRKLVEEVRCDRRSDYAFRKDGALLKDKRLCV 130

BLAST of CsaV3_5G015110 vs. ExPASy TrEMBL
Match: A0A5A7U039 (RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00720 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 1   PTLEEKIVRWQPKDHELRRLAKKVRCESGSDYTFRNHDMLVKDKRLCVP 50
           P LEE+IV+ QP+D  LR++ K+VRC+  SDY FR+   L+K++RLCVP
Sbjct: 85  PALEEEIVKMQPEDPTLRKMGKEVRCKRWSDYMFRSDRALIKERRLCVP 133

BLAST of CsaV3_5G015110 vs. ExPASy TrEMBL
Match: A0A5A7SZR3 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001060 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 2   TLEEKIVRWQPKDHELRRLAKKVRCESGSDYTFRNHDMLVKDKRLCVP 50
           T EE+IVR Q KD E R++A++V+CE  SDY FR+ D L+K KRLC P
Sbjct: 68  THEEEIVRSQLKDPEFRKMAEEVKCERRSDYAFRDGDALLKHKRLCAP 115

BLAST of CsaV3_5G015110 vs. ExPASy TrEMBL
Match: A0A5A7SLJ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold718G00170 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.1e-06
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 1   PTLEEKIVRWQPKDHELRRLAKKVRCESGSDYTFRNHDMLVKDKRLCV 49
           P L+E+IVR +P D +LR+L ++VRC+  SDY FR    L+KDKRLCV
Sbjct: 83  PILKEEIVRSRPVDPKLRKLVEEVRCDRRSDYAFRKDGALLKDKRLCV 130

BLAST of CsaV3_5G015110 vs. ExPASy TrEMBL
Match: A0A5A7SJK7 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001530 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.1e-06
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0

Query: 1   PTLEEKIVRWQPKDHELRRLAKKVRCESGSDYTFRNHDMLVKDKRLCVP 50
           PTLE++IV+ Q +D  LR+LAK+VRCE  SDY FR+    +K+ RLCVP
Sbjct: 75  PTLEKEIVKSQLEDPPLRKLAKEVRCERRSDYIFRSDGASLKEMRLCVP 123

BLAST of CsaV3_5G015110 vs. ExPASy TrEMBL
Match: A0A5D3DH41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00060 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.1e-06
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0

Query: 1   PTLEEKIVRWQPKDHELRRLAKKVRCESGSDYTFRNHDMLVKDKRLCVP 50
           PTLE++IV+ Q +D  LR+LAK+VRCE  SDY FR+    +K+ RLCVP
Sbjct: 75  PTLEKEIVKSQLEDPPLRKLAKEVRCERRSDYIFRSDGASLKEMRLCVP 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8648211.11.2e-20100.00hypothetical protein Csa_018380, partial [Cucumis sativus][more]
KAA0047015.13.4e-0755.10hypothetical protein E6C27_scaffold230G002170 [Cucumis melo var. makuwa] >TYK047... [more]
KAA0036590.13.7e-0658.33polyprotein [Cucumis melo var. makuwa][more]
TYK22589.16.4e-0657.14hypothetical protein E5676_scaffold195G00060 [Cucumis melo var. makuwa][more]
KAA0025335.16.4e-0656.25uncharacterized protein E6C27_scaffold1204G00180 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U0391.6e-0755.10RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7SZR31.8e-0658.33Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001060 P... [more]
A0A5A7SLJ73.1e-0656.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SJK73.1e-0657.14Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A5D3DH413.1e-0657.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G015110.1CsaV3_5G015110.1mRNA