CsaV3_5G015100 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G015100
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ty3-gypsy retrotransposon protein
Location	chr5: 12302543 .. 12303187 (+)
RNA-Seq Expression	CsaV3_5G015100
Synteny	CsaV3_5G015100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCGTTATCATTCATTAATGACACATTCAAAGAACACAGAGGATGTGACACTAAGTCTTGTGGTGTCACCAAGAAGAGAAGTTCTGAAAGAGGCGGTTAATGACCCGCTCTAAAGGGGGAAGGAAACAACCCCTGAGGTAGATGTTGAGACAAGCCTCCCCCTCACCACCAAAGCAAAGTTTACAAGTTTCAGTGCAAAATATCAAATAGAAAGAGGCAGTGAGGGAAGATGTATATGCCGATGATGAGGATTACACTCTCAAATTCTTTGATGATTACGTTTGCAAACCGATGAGCAGTGGATTTGAAGATGAAATCCAATGTCAAAGCAACTTCCAAGAGATGCACTTTCAGAGTCAGAAGCAGCTAGAAGACTTTAAACTAAAACTGGATAACAAAAACCATCATCATCAAGTTCAAATTGAAGGACTAAAGGCTAAAATGCAAGAGCTCATATTGCAGGAACAAGAACTCAAGGTGCAGAATCAAGTAATCATGGAAATGGTAAAACAAACCACTAGGTGGAATGATGTTCAATTCACGTCTGCATTGCGCTATCTCTACTCAAGCATGTGTAGCATCATACCAGTGTTTGAAGTCTCAATGGAAATATCCAGACCCCTCACACATTACGATCATGA

mRNA sequence

ATGACCCGTTATCATTCATTAATGACACATTCAAAGAACACAGAGGATGTGACACTAAGTCTTGTGGTGTCACCAAGAAGAGAAGTTCTGAAAGAGGCGAAAGAGGCAGTGAGGGAAGATGTATATGCCGATGATGAGGATTACACTCTCAAATTCTTTGATGATTACGTTTGCAAACCGATGAGCAGTGGATTTGAAGATGAAATCCAATGTCAAAGCAACTTCCAAGAGATGCACTTTCAGAGTCAGAAGCAGCTAGAAGACTTTAAACTAAAACTGGATAACAAAAACCATCATCATCAAGTTCAAATTGAAGGACTAAAGGCTAAAATGCAAGAGCTCATATTGCAGGAACAAGAACTCAAGGTGCAGAATCAAGTAATCATGGAAATGGTAAAACAAACCACTAGGTGGAATGATGTTCAATTCACGTCTGCATTGCGCTATCTCTACTCAAGCATGTGTAGCATCATACCAACCCCTCACACATTACGATCATGA

Coding sequence (CDS)

ATGACCCGTTATCATTCATTAATGACACATTCAAAGAACACAGAGGATGTGACACTAAGTCTTGTGGTGTCACCAAGAAGAGAAGTTCTGAAAGAGGCGAAAGAGGCAGTGAGGGAAGATGTATATGCCGATGATGAGGATTACACTCTCAAATTCTTTGATGATTACGTTTGCAAACCGATGAGCAGTGGATTTGAAGATGAAATCCAATGTCAAAGCAACTTCCAAGAGATGCACTTTCAGAGTCAGAAGCAGCTAGAAGACTTTAAACTAAAACTGGATAACAAAAACCATCATCATCAAGTTCAAATTGAAGGACTAAAGGCTAAAATGCAAGAGCTCATATTGCAGGAACAAGAACTCAAGGTGCAGAATCAAGTAATCATGGAAATGGTAAAACAAACCACTAGGTGGAATGATGTTCAATTCACGTCTGCATTGCGCTATCTCTACTCAAGCATGTGTAGCATCATACCAACCCCTCACACATTACGATCATGA

Protein sequence

MTRYHSLMTHSKNTEDVTLSLVVSPRREVLKEAKEAVREDVYADDEDYTLKFFDDYVCKPMSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQELILQEQELKVQNQVIMEMVKQTTRWNDVQFTSALRYLYSSMCSIIPTPHTLRS*

Homology

[Close]

BLAST of CsaV3_5G015100 vs. NCBI nr
Match: KGN49653.1 (hypothetical protein Csa_018510 [Cucumis sativus])

HSP 1 Score: 325.1 bits (832), Expect = 3.6e-85
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MTRYHSLMTHSKNTEDVTLSLVVSPRREVLKEAKEAVREDVYADDEDYTLKFFDDYVCKP 60
           MTRYHSLMTHSKNTEDVTLSLVVSPRREVLKEAKEAVREDVYADDEDYTLKFFDDYVCKP
Sbjct: 1   MTRYHSLMTHSKNTEDVTLSLVVSPRREVLKEAKEAVREDVYADDEDYTLKFFDDYVCKP 60

Query: 61  MSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQELILQEQE 120
           MSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQELILQEQE
Sbjct: 61  MSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQELILQEQE 120

Query: 121 LKVQNQVIMEMVKQTTRWNDVQFTSALRYLYSSMCSIIPTPHTLRS 167
           LKVQNQVIMEMVKQTTRWNDVQFTSALRYLYSSMCSIIPTPHTLRS
Sbjct: 121 LKVQNQVIMEMVKQTTRWNDVQFTSALRYLYSSMCSIIPTPHTLRS 166

[Close]

BLAST of CsaV3_5G015100 vs. NCBI nr
Match: TYK07283.1 (hypothetical protein E5676_scaffold606G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-34
Identity = 83/123 (67.48%), Postives = 98/123 (79.67%), Query Frame = 0


Query: 15  EDVTLSLVVSPRREVLKEAKEAVREDVYADDEDYTLKFFDDYVCKPMSSGFEDEIQCQSN 74
           + +TLS +VSPRREVL+E KEA R+D   DDE+Y  KF DDYVCKPMS+GFED IQCQSN
Sbjct: 79  QGLTLSPMVSPRREVLEEEKEAARKDEDGDDENYIFKFIDDYVCKPMSNGFEDVIQCQSN 138

Query: 75  FQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQELILQEQELKVQNQVIMEMVKQ 134
            Q+MH   QKQL DF++KL N NHHHQ QIEGLKA+MQEL  Q QELKVQ  VIMEM++Q
Sbjct: 139 LQKMHLCCQKQLRDFEVKLQNINHHHQAQIEGLKAEMQELRSQNQELKVQIHVIMEMIEQ 198

Query: 135 TTR 138
            ++
Sbjct: 199 ISK 201

[Close]

BLAST of CsaV3_5G015100 vs. NCBI nr
Match: KAA0063408.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK11667.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 6.2e-13
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 37  VREDVYAD-DEDYTLKFFDDYVCKPMSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDN 96
           VRED     DEDYTLKF DD+VCKPM++ FE  I C SN +EMH   QKQ  D +LK DN
Sbjct: 247 VREDDEESLDEDYTLKFIDDHVCKPMNNVFEGVISCPSNLREMHLWIQKQFHDLELKFDN 306

Query: 97  KNHHHQVQIEGLKAKMQELILQEQELKVQ 125
            N ++ VQIE  +A+M EL  Q  EL +Q
Sbjct: 307 TNAYNLVQIEAFEAEMNELKTQNGELNLQ 335

[Close]

BLAST of CsaV3_5G015100 vs. NCBI nr
Match: KAA0056255.1 (hypothetical protein E6C27_scaffold226G00220 [Cucumis melo var. makuwa] >TYK05244.1 hypothetical protein E5676_scaffold108G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 4.0e-12
Identity = 53/127 (41.73%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 34  KEAVRE-DVYADDEDYTLKFFDDYVCKPMSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLK 93
           KEAV+E D    DEDYTLKF DDY CKPM++GFED                         
Sbjct: 7   KEAVKEDDEETIDEDYTLKFIDDYACKPMNNGFED------------------------- 66

Query: 94  LDNKNHHHQVQIEGLKAKMQELILQEQELKVQNQVIMEMVKQTTRWNDVQFTSALRYLYS 153
                      I+GLKA+M EL  Q Q+++ QN+ +M + K+     DVQF SALRYLY+
Sbjct: 67  -----------IKGLKAEMNELKTQLQKIREQNETLMGLEKKNVMHTDVQFKSALRYLYA 97

Query: 154 SMCSIIP 160
           ++ +IIP
Sbjct: 127 AIWNIIP 97

[Close]

BLAST of CsaV3_5G015100 vs. NCBI nr
Match: KAA0032726.1 (drebrin-like [Cucumis melo var. makuwa] >TYJ98758.1 drebrin-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-10
Identity = 48/125 (38.40%), Postives = 62/125 (49.60%), Query Frame = 0


Query: 34  KEAVREDVYADDEDYTLKFFDDYVCKPMSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKL 93
           KEA RED    DE +  KF D Y+C P+  GFED I+CQSN +EM F S+KQL D +LK 
Sbjct: 184 KEAEREDEKEVDEYFIFKFMDHYICMPVEKGFEDVIKCQSNHKEMPFWSEKQLCDLELKC 243

Query: 94  DNKNHHHQVQIEGLKAKMQELILQEQELKVQNQVIMEMVKQTTRWNDVQFTSALRYLYSS 153
           +N N + Q +I+ L A                            WND  F + L+Y    
Sbjct: 244 NNANANSQAEIDELVA----------------------------WNDTHFKALLKYQQLL 280

Query: 154 MCSII 159
           MC+ I
Sbjct: 304 MCTTI 280

[Close]

BLAST of CsaV3_5G015100 vs. ExPASy TrEMBL
Match: A0A0A0KJB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G049020 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.7e-85
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MTRYHSLMTHSKNTEDVTLSLVVSPRREVLKEAKEAVREDVYADDEDYTLKFFDDYVCKP 60
           MTRYHSLMTHSKNTEDVTLSLVVSPRREVLKEAKEAVREDVYADDEDYTLKFFDDYVCKP
Sbjct: 1   MTRYHSLMTHSKNTEDVTLSLVVSPRREVLKEAKEAVREDVYADDEDYTLKFFDDYVCKP 60

Query: 61  MSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQELILQEQE 120
           MSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQELILQEQE
Sbjct: 61  MSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQELILQEQE 120

Query: 121 LKVQNQVIMEMVKQTTRWNDVQFTSALRYLYSSMCSIIPTPHTLRS 167
           LKVQNQVIMEMVKQTTRWNDVQFTSALRYLYSSMCSIIPTPHTLRS
Sbjct: 121 LKVQNQVIMEMVKQTTRWNDVQFTSALRYLYSSMCSIIPTPHTLRS 166

[Close]

BLAST of CsaV3_5G015100 vs. ExPASy TrEMBL
Match: A0A5D3C5U6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001830 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 6.2e-35
Identity = 83/123 (67.48%), Postives = 98/123 (79.67%), Query Frame = 0


Query: 15  EDVTLSLVVSPRREVLKEAKEAVREDVYADDEDYTLKFFDDYVCKPMSSGFEDEIQCQSN 74
           + +TLS +VSPRREVL+E KEA R+D   DDE+Y  KF DDYVCKPMS+GFED IQCQSN
Sbjct: 79  QGLTLSPMVSPRREVLEEEKEAARKDEDGDDENYIFKFIDDYVCKPMSNGFEDVIQCQSN 138

Query: 75  FQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQELILQEQELKVQNQVIMEMVKQ 134
            Q+MH   QKQL DF++KL N NHHHQ QIEGLKA+MQEL  Q QELKVQ  VIMEM++Q
Sbjct: 139 LQKMHLCCQKQLRDFEVKLQNINHHHQAQIEGLKAEMQELRSQNQELKVQIHVIMEMIEQ 198

Query: 135 TTR 138
            ++
Sbjct: 199 ISK 201

[Close]

BLAST of CsaV3_5G015100 vs. ExPASy TrEMBL
Match: A0A5A7V749 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00390 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.0e-13
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 37  VREDVYAD-DEDYTLKFFDDYVCKPMSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDN 96
           VRED     DEDYTLKF DD+VCKPM++ FE  I C SN +EMH   QKQ  D +LK DN
Sbjct: 247 VREDDEESLDEDYTLKFIDDHVCKPMNNVFEGVISCPSNLREMHLWIQKQFHDLELKFDN 306

Query: 97  KNHHHQVQIEGLKAKMQELILQEQELKVQ 125
            N ++ VQIE  +A+M EL  Q  EL +Q
Sbjct: 307 TNAYNLVQIEAFEAEMNELKTQNGELNLQ 335

[Close]

BLAST of CsaV3_5G015100 vs. ExPASy TrEMBL
Match: A0A5A7URK6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00540 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-12
Identity = 53/127 (41.73%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 34  KEAVRE-DVYADDEDYTLKFFDDYVCKPMSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLK 93
           KEAV+E D    DEDYTLKF DDY CKPM++GFED                         
Sbjct: 7   KEAVKEDDEETIDEDYTLKFIDDYACKPMNNGFED------------------------- 66

Query: 94  LDNKNHHHQVQIEGLKAKMQELILQEQELKVQNQVIMEMVKQTTRWNDVQFTSALRYLYS 153
                      I+GLKA+M EL  Q Q+++ QN+ +M + K+     DVQF SALRYLY+
Sbjct: 67  -----------IKGLKAEMNELKTQLQKIREQNETLMGLEKKNVMHTDVQFKSALRYLYA 97

Query: 154 SMCSIIP 160
           ++ +IIP
Sbjct: 127 AIWNIIP 97

[Close]

BLAST of CsaV3_5G015100 vs. ExPASy TrEMBL
Match: A0A5A7SRQ1 (Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00660 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.3e-11
Identity = 48/125 (38.40%), Postives = 62/125 (49.60%), Query Frame = 0


Query: 34  KEAVREDVYADDEDYTLKFFDDYVCKPMSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKL 93
           KEA RED    DE +  KF D Y+C P+  GFED I+CQSN +EM F S+KQL D +LK 
Sbjct: 184 KEAEREDEKEVDEYFIFKFMDHYICMPVEKGFEDVIKCQSNHKEMPFWSEKQLCDLELKC 243

Query: 94  DNKNHHHQVQIEGLKAKMQELILQEQELKVQNQVIMEMVKQTTRWNDVQFTSALRYLYSS 153
           +N N + Q +I+ L A                            WND  F + L+Y    
Sbjct: 244 NNANANSQAEIDELVA----------------------------WNDTHFKALLKYQQLL 280

Query: 154 MCSII 159
           MC+ I
Sbjct: 304 MCTTI 280

The following BLAST results are available for this feature:

BLAST of CsaV3_5G015100 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49653.1	3.6e-85	100.00	hypothetical protein Csa_018510 [Cucumis sativus]	[more]
TYK07283.1	1.3e-34	67.48	hypothetical protein E5676_scaffold606G001830 [Cucumis melo var. makuwa]	[more]
KAA0063408.1	6.2e-13	55.06	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK11667.1 ty3-gyp...	[more]
KAA0056255.1	4.0e-12	41.73	hypothetical protein E6C27_scaffold226G00220 [Cucumis melo var. makuwa] >TYK0524...	[more]
KAA0032726.1	1.3e-10	38.40	drebrin-like [Cucumis melo var. makuwa] >TYJ98758.1 drebrin-like [Cucumis melo v...	[more]

BLAST of CsaV3_5G015100 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJB9	1.7e-85	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G049020 PE=4 SV=1	[more]
A0A5D3C5U6	6.2e-35	67.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V749	3.0e-13	55.06	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7URK6	1.9e-12	41.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SRQ1	6.3e-11	38.40	Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00660 P...	[more]

BLAST of CsaV3_5G015100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 104..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G015100.1	CsaV3_5G015100.1	mRNA