CsaV3_5G014920 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G014920
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ribonuclease H
Location	chr5: 12048321 .. 12048572 (+)
RNA-Seq Expression	CsaV3_5G014920
Synteny	CsaV3_5G014920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAAATTAAGCACTCTAATTCTACCCCGTACTGCCCTAAGATGAATGGAGCAGTAGAGGCGGCAAATAAAAATATCAAAAAAATCATTGAAAAGATGACTGTCACATATAAAGATTGGCATGAGATGTTACCATTTGCATTACACTGTTACCGAACGTCAGTTCGCACATCAATTGGGGCAACTCCTTTTTCTTTGGTGTATGGCATGGAAGCTGTTTTGCCTATTGAGGTCGAGGTGCTATCCCTCAGG

mRNA sequence

TTTAAAATTAAGCACTCTAATTCTACCCCGTACTGCCCTAAGATGAATGGAGCAGTAGAGGCGGCAAATAAAAATATCAAAAAAATCATTGAAAAGATGACTGTCACATATAAAGATTGGCATGAGATGTTACCATTTGCATTACACTGTTACCGAACGTCAGTTCGCACATCAATTGGGGCAACTCCTTTTTCTTTGGTGTATGGCATGGAAGCTGTTTTGCCTATTGAGGTCGAGGTGCTATCCCTCAGG

Coding sequence (CDS)

TTTAAAATTAAGCACTCTAATTCTACCCCGTACTGCCCTAAGATGAATGGAGCAGTAGAGGCGGCAAATAAAAATATCAAAAAAATCATTGAAAAGATGACTGTCACATATAAAGATTGGCATGAGATGTTACCATTTGCATTACACTGTTACCGAACGTCAGTTCGCACATCAATTGGGGCAACTCCTTTTTCTTTGGTGTATGGCATGGAAGCTGTTTTGCCTATTGAGGTCGAGGTGCTATCCCTCAGG

Protein sequence

FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIGATPFSLVYGMEAVLPIEVEVLSLR

Homology

[Close]

BLAST of CsaV3_5G014920 vs. NCBI nr
Match: KGN50849.2 (hypothetical protein Csa_018384, partial [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 3.9e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
          FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG
Sbjct: 1  FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60

Query: 61 ATPFSLVYGMEAVLPIEVEVLSLR 85
          ATPFSLVYGMEAVLPIEVEVLSLR
Sbjct: 61 ATPFSLVYGMEAVLPIEVEVLSLR 84

[Close]

BLAST of CsaV3_5G014920 vs. NCBI nr
Match: XP_022150030.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 2.5e-34
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKIKH NSTPY PKMNGAVEAANKNIK+I+EKMTVTY+DWHEMLPFALH YRTSVRTS G
Sbjct: 1467 FKIKHLNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRDWHEMLPFALHGYRTSVRTSTG 1526

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGMEAVLPIEVE+ SLR
Sbjct: 1527 ATPFSLVYGMEAVLPIEVEIPSLR 1550

[Close]

BLAST of CsaV3_5G014920 vs. NCBI nr
Match: KAA0037621.1 (uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 5.5e-34
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKI H NSTPY PKMNGAVEAANKNIK+IIEKMT+TYKDWHEMLPFALH YRTSVRTS G
Sbjct: 1737 FKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTG 1796

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGMEAVLP+EVE+ SLR
Sbjct: 1797 ATPFSLVYGMEAVLPLEVEIPSLR 1820

[Close]

BLAST of CsaV3_5G014920 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 153.7 bits (387), Expect = 7.1e-34
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKIKH NSTPY PKMNGAVEAANKNIK+I+EKMTVTY+DWHEMLPFALH YRTSVRTS G
Sbjct: 1672 FKIKHFNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRDWHEMLPFALHGYRTSVRTSTG 1731

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGM+AVLPIEVE+ SLR
Sbjct: 1732 ATPFSLVYGMKAVLPIEVEIPSLR 1755

[Close]

BLAST of CsaV3_5G014920 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 153.7 bits (387), Expect = 7.1e-34
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKIKH NSTPY PKMNGAVEAANKNIK+I+EKMTVTY+DWHEMLPFALH YRTSVRTS G
Sbjct: 2063 FKIKHLNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRDWHEMLPFALHGYRTSVRTSTG 2122

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGME VLPIEVE+ SLR
Sbjct: 2123 ATPFSLVYGMEVVLPIEVEIPSLR 2146

[Close]

BLAST of CsaV3_5G014920 vs. ExPASy Swiss-Prot
Match: P27401 (Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) OX=11644 GN=pol PE=3 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 3.6e-04
Identity = 23/69 (33.33%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 8    STPYCPKMNGAVEAANKNIKKIIEKMTV-TYKDWHEMLPFALHCYRTSVRTSIGATPFSL 67
            STPY P+ +G VE  N +IK+++ K+ V     W+++LP        S   S   TP  L
Sbjct: 959  STPYHPQSSGKVERKNSDIKRLLTKLLVGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQL 1018

Query: 68   VYGMEAVLP 76
            ++G+++  P
Sbjct: 1019 LFGIDSNTP 1027

[Close]

BLAST of CsaV3_5G014920 vs. ExPASy Swiss-Prot
Match: P23074 (Pro-Pol polyprotein OS=Simian foamy virus type 1 OX=338478 GN=pol PE=1 SV=3)

HSP 1 Score: 45.1 bits (105), Expect = 4.7e-04
Identity = 22/69 (31.88%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 8    STPYCPKMNGAVEAANKNIKKIIEKMTV-TYKDWHEMLPFALHCYRTSVRTSIGATPFSL 67
            STPY P+ +G VE  N +IK+++ K+ +     W+++LP        S   S   TP  L
Sbjct: 959  STPYHPQSSGKVERKNSDIKRLLTKLLIGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQL 1018

Query: 68   VYGMEAVLP 76
            ++G+++  P
Sbjct: 1019 LFGVDSNTP 1027

[Close]

BLAST of CsaV3_5G014920 vs. ExPASy TrEMBL
Match: A0A6J1D7C7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018303 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKIKH NSTPY PKMNGAVEAANKNIK+I+EKMTVTY+DWHEMLPFALH YRTSVRTS G
Sbjct: 1467 FKIKHLNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRDWHEMLPFALHGYRTSVRTSTG 1526

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGMEAVLPIEVE+ SLR
Sbjct: 1527 ATPFSLVYGMEAVLPIEVEIPSLR 1550

[Close]

BLAST of CsaV3_5G014920 vs. ExPASy TrEMBL
Match: A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.6e-34
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKI H NSTPY PKMNGAVEAANKNIK+IIEKMT+TYKDWHEMLPFALH YRTSVRTS G
Sbjct: 1737 FKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTG 1796

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGMEAVLP+EVE+ SLR
Sbjct: 1797 ATPFSLVYGMEAVLPLEVEIPSLR 1820

[Close]

BLAST of CsaV3_5G014920 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.5e-34
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKIKH NSTPY PKMNGAVEAANKNIK+I+EKMTVTY+DWHEMLPFALH YRTSVRTS G
Sbjct: 1672 FKIKHFNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRDWHEMLPFALHGYRTSVRTSTG 1731

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGM+AVLPIEVE+ SLR
Sbjct: 1732 ATPFSLVYGMKAVLPIEVEIPSLR 1755

[Close]

BLAST of CsaV3_5G014920 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.5e-34
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKIKH NSTPY PKMNGAVEAANKNIK+I+EKMTVTY+DWHEMLPFALH YRTSVRTS G
Sbjct: 2063 FKIKHLNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRDWHEMLPFALHGYRTSVRTSTG 2122

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGME VLPIEVE+ SLR
Sbjct: 2123 ATPFSLVYGMEVVLPIEVEIPSLR 2146

[Close]

BLAST of CsaV3_5G014920 vs. ExPASy TrEMBL
Match: A0A445H4Y2 (Ribonuclease H OS=Glycine soja OX=3848 GN=D0Y65_009828 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.9e-34
Identity = 75/84 (89.29%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKI+H NSTPY PKMNGAVEAANKNIKKII+KMTV+YKDWHEMLPFALH YRTSVRTS G
Sbjct: 926  FKIQHHNSTPYRPKMNGAVEAANKNIKKIIQKMTVSYKDWHEMLPFALHGYRTSVRTSTG 985

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGMEAVLP EVEV SLR
Sbjct: 986  ATPFSLVYGMEAVLPFEVEVPSLR 1009

The following BLAST results are available for this feature:

BLAST of CsaV3_5G014920 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50849.2	3.9e-40	100.00	hypothetical protein Csa_018384, partial [Cucumis sativus]	[more]
XP_022150030.1	2.5e-34	89.29	LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]	[more]
KAA0037621.1	5.5e-34	88.10	uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]	[more]
XP_022158986.1	7.1e-34	88.10	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
XP_022147189.1	7.1e-34	88.10	LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]	[more]

BLAST of CsaV3_5G014920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27401	3.6e-04	33.33	Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) OX=11644 GN=pol PE...	[more]
P23074	4.7e-04	31.88	Pro-Pol polyprotein OS=Simian foamy virus type 1 OX=338478 GN=pol PE=1 SV=3	[more]

BLAST of CsaV3_5G014920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D7C7	1.2e-34	89.29	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018303 PE=4 SV=1	[more]
A0A5A7T7R4	2.6e-34	88.10	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282...	[more]
A0A6J1E2J7	3.5e-34	88.10	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]
A0A6J1D099	3.5e-34	88.10	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1	[more]
A0A445H4Y2	5.9e-34	89.29	Ribonuclease H OS=Glycine soja OX=3848 GN=D0Y65_009828 PE=4 SV=1	[more]

BLAST of CsaV3_5G014920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..82 e-value: 7.8E-23 score: 82.8
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..82
None	No IPR available	PANTHER	PTHR24559:SF379	SUBFAMILY NOT NAMED	coord: 2..82
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..71 score: 9.643931
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G014920.1	CsaV3_5G014920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding