CsaV3_5G014870 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G014870
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 11967340 .. 11969576 (+)
RNA-Seq Expression	CsaV3_5G014870
Synteny	CsaV3_5G014870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACTGCCCTCTCACTCTCCAAATCGCCGGTCATCTCCTACCTTCGTTGTCGATGGCGGTCTTTTAGGTATTTATGGATCTAATCTTTACTCTTTGTACTTTTCTTTGAGTAAGTCATCCCAAAAAAGATGGTTTTATGGTATTTGAGTAAAGCTTTACGCTATTTGCTAAATTGCAAAGTGGTTTCTCGACACAAAATCCCATGGTCGAAATTTAATAAGAATAAAGTTCTTGCTCCTGCCGATTTTTTCAATTAAACTTGAAACTCAATTCTCAACATTGCATCTAAGATATGTCCTTCACAAATTTTTGTATTTATTCCTTAATTTTTCTAGTTTTCTGGCCAAAATGCCCATAATTTTTCTGATGAAGTTTTCATATTCAAAACATGTCATTCTCATCATTTTTTTTGTTGAGTAAAATGTTTGCTTCTAGAAAGGTATGAACTCTTTTTCTATGTTCAAAATAAACTTACTTTTTATATATATCTTCTTTATTCTCATGACATTATCTGTTAATCAGTCAAAATAAAGTTGCTATTTATATTTAAGGGTATGAACTCTTTGAACAATATAATATGTCATCAAATTAAATTATGAAAGTTAATGCATTGAATGGGTCTATGTTTGCTATTTTTTGAGGGTATTACTTTTTTTTCAATGCATATGCGTTGTTTGCTTTATTGTCAACCATGCAAACATGCTTTAATTTCACATGTTGTTAAATGATCGAAGTTTTAATTAATTGGTATCCTATGAATTTCTTTGATTCATTGCACTGTTGAGTAAAACTTGATTATTGAATGTACATGGAAGGAAATCATTTTAGAATGTTATTATAATGGAATTCTGGTGAACTAGATTTTACTTTGCTGGTTCTAATTTTATTAGTTAACTTTCTTTTGAGGTAGGGGATGACCATTTGAATAAAATTTTGATTAGTCAAAACATAATCTTGATTGTTTATGATTAGTTAACATGTTTTTGCTTGGAGAAGGGGGAATTGAATATGGTTTTAGAAAATATTGGCTTTTTGTTGATACTTAAATCATATTCTTAGTGATGGTGCCAGTTCCTTCCCATTTTCCTACTTCGCCTCTCTTGTGTGTGTGTTTACTTTGATCAATTAATATGGTACATATCTGGTGGTATTTTATTTATGTTAGTGATTTTGGGATCTCACGCTTGAAGTCACAAGCATTTCTTTCGTCAAAATCACCTGTTGGGACTGTAAGTTATTGTGTTTGTGGCATTATTCCACACAATAACTGTAAGATGTTTCGTGAGTCTGGACATTTTATTAACCTACAAAAAAGACTGCTTCCTATTTATAAGATGTTTATTTGTGCTTCACTACTTGTGTTCTTTATGGTAGAGAATTGTATTGACTTTCATGGGTAAAGGAAGGAAAACTTGCGATCTTGAACAATTAGATAAATCTAGTCTTCTTTCCAGAATGCAAGTTTCTACTTCCATCTACAAAGGTGTTACTGTTAGAGAGAAGTTTCTAAAATTCCTACGTCCTTTCTAGTATATATTTTGATTAATCAAGCCTACAGTTTCTCTGTATAGAATTGTCTTAGCTTTTAAATGGTTGAGAACTTCTTAAGCAATGGATATTATATATTTCTTTAGAGATGGCTTTCAAATCATTTTTATGGTTATTGAAACTGTAGGGAGGGAGGTTCTTTCAATTTCTAGTGTTTATATTAGAACTCGTAGTTATTGTTTATGGTAAACCATTAGATCTGGCTTGTTCCTTGAAAAAGCTTTTGGCTATTGAAATTTGGCAAGACTGTCTTGTATACATAAAAGATAGTTTGTATTGTAATTGTTCTTGAAATAATGAACGGATACCACTATTCTAATTATATTTCATACCACTACTATTTTTTTTTTTTTTTTGTTCTTTCCCAGCTCCATAACATAACATCACTCAAGTCTTGTGTGTAGTGAATGCAACTAATTAAAATTAGGTGCTTGTCTTGCAATCTTTTTACATATGCACTATTTTCTAACAACACAAATTGGGCAGATTTTCATTCGATCCTACTGAAACATTGGGGTTAAATGTTGCGTTGTGCTTCTATACAATGTATACTTTGATTTCCTAATTAAGGTATATTTTTCTTCACTATCTTTTAGAGTTTTCAAATCGAGAGAAAAAATAATTAATTCGATCATGACATTGGAGAAGGCTAAAGAGATTGTGGCTTCTAATCTCGTCATGGTCTTCAG

mRNA sequence

CCACTGCCCTCTCACTCTCCAAATCGCCGGTCATCTCCTACCTTCGTTGTCGATGGCGGTCTTTTAGAGTTTTCAAATCGAGAGAAAAAATAA

Coding sequence (CDS)

CCACTGCCCTCTCACTCTCCAAATCGCCGGTCATCTCCTACCTTCGTTGTCGATGGCGGTCTTTTAGAGTTTTCAAATCGAGAGAAAAAATAA

Protein sequence

PLPSHSPNRRSSPTFVVDGGLLEFSNREKK*

Homology

[Close]

BLAST of CsaV3_5G014870 vs. NCBI nr
Match: KAE8648199.1 (hypothetical protein Csa_023885, partial [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1  PLPSHSPNRRSSPTFVVDGGLLEFSNREKK 31
          PLPSHSPNRRSSPTFVVDGGLLEFSNREKK
Sbjct: 1  PLPSHSPNRRSSPTFVVDGGLLEFSNREKK 30

The following BLAST results are available for this feature:

BLAST of CsaV3_5G014870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648199.1	3.2e-08	100.00	hypothetical protein Csa_023885, partial [Cucumis sativus]	[more]

BLAST of CsaV3_5G014870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G014870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G014870 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G014870.1	CsaV3_5G014870.1	mRNA