CsaV3_5G014230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G014230
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 11220744 .. 11221000 (-)
RNA-Seq ExpressionCsaV3_5G014230
SyntenyCsaV3_5G014230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGCCATGGCTCTCGGATTCTGGAAAAATCGGCGGGTGGAGGCGCACACGGCTTGCGAACGGCTCGCAAAGGGCGGAGGACACTCACGGCTCGCGCACGACTCGGACTGAAGAAGAAGGCAGACGCGCGCGTTCGGCTGGGTCGTGATGGGCAGCGTTCGGACAAAGCAGTGGCGAACGCGGCGGAGAAGAAAACGATGCGGCGGATGCTTGCAAGAACGGCCAAACGAAGACGACGGCTTGCGACGACAAGTTGA

mRNA sequence

AGCCATGGCTCTCGGATTCTGGAAAAATCGGCGGGTGGAGGCGCACACGGCTTGCGAACGGCTCGCAAAGGGCGGAGGACACTCACGGCTCGCGCACGACTCGGACTGAAGAAGAAGGCAGACGCGCGCGTTCGGCTGGGTCGTGATGGGCAGCGTTCGGACAAAGCAGTGGCGAACGCGGCGGAGAAGAAAACGATGCGGCGGATGCTTGCAAGAACGGCCAAACGAAGACGACGGCTTGCGACGACAAGTTG

Coding sequence (CDS)

AGCCATGGCTCTCGGATTCTGGAAAAATCGGCGGGTGGAGGCGCACACGGCTTGCGAACGGCTCGCAAAGGGCGGAGGACACTCACGGCTCGCGCACGACTCGGACTGAAGAAGAAGGCAGACGCGCGCGTTCGGCTGGGTCGTGATGGGCAGCGTTCGGACAAAGCAGTGGCGAACGCGGCGGAGAAGAAAACGATGCGGCGGATGCTTGCAAGAACGGCCAAACGAAGACGACGGCTTGCGACGACAAGTTG

Protein sequence

SHGSRILEKSAGGGAHGLRTARKGRRTLTARARLGLKKKADARVRLGRDGQRSDKAVANAAEKKTMRRMLARTAKRRRRLATTSX
Homology
[Close]
BLAST of CsaV3_5G014230 vs. NCBI nr
Match: KAE8648165.1 (hypothetical protein Csa_023897, partial [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 5.2e-32
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  SHGSRILEKSAGGGAHGLRTARKGRRTLTARARLGLKKKADARVRLGRDGQRSDKAVANA 60
          SHGSRILEKSAGGGAHGLRTARKGRRTLTARARLGLKKKADARVRLGRDGQRSDKAVANA
Sbjct: 1  SHGSRILEKSAGGGAHGLRTARKGRRTLTARARLGLKKKADARVRLGRDGQRSDKAVANA 60

Query: 61 AEKKTMRRMLARTAKRRRRLATTS 85
          AEKKTMRRMLARTAKRRRRLATTS
Sbjct: 61 AEKKTMRRMLARTAKRRRRLATTS 84

[Close]
BLAST of CsaV3_5G014230 vs. ExPASy TrEMBL
Match: A0A0A0KPG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G014280 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.5e-32
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1   SHGSRILEKSAGGGAHGLRTARKGRRTLTARARLGLKKKADARVRLGRDGQRSDKAVANA 60
           SHGSRILEKSAGGGAHGLRTARKGRRTLTARARLGLKKKADARVRLGRDGQRSDKAVANA
Sbjct: 96  SHGSRILEKSAGGGAHGLRTARKGRRTLTARARLGLKKKADARVRLGRDGQRSDKAVANA 155

Query: 61  AEKKTMRRMLARTAKRRRRLATTS 85
           AEKKTMRRMLARTAKRRRRLATTS
Sbjct: 156 AEKKTMRRMLARTAKRRRRLATTS 179

The following BLAST results are available for this feature:
BLAST of CsaV3_5G014230 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648165.15.2e-32100.00hypothetical protein Csa_023897, partial [Cucumis sativus][more]
BLAST of CsaV3_5G014230 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G014230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPG62.5e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G014280 PE=4 SV=1[more]
BLAST of CsaV3_5G014230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G014230.1CsaV3_5G014230.1mRNA