CsaV3_5G014060 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G014060
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Retrovirus-related Pol polyprotein from transposon RE2
Location	chr5: 10969860 .. 10970069 (-)
RNA-Seq Expression	CsaV3_5G014060
Synteny	CsaV3_5G014060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCTGCAAAATCTTGTGTTACACTAATGTCTACTTCTCTTGACCTCTACACCACTGCACTCCCTTTTAATGACCCATCCCTATACCGCAAATTAGTTGGTTCCTTGCAATATCTTACATTTACTCGCACATATATTGCCTTTTTTGTAAATCGTGTCAAATCAATTCATTCACAAACCAATCACCATTCACTTTTGGACAGTTAA

mRNA sequence

ATGACCTCTGCAAAATCTTGTGTTACACTAATGTCTACTTCTCTTGACCTCTACACCACTGCACTCCCTTTTAATGACCCATCCCTATACCGCAAATTAGTTGGTTCCTTGCAATATCTTACATTTACTCGCACATATATTGCCTTTTTTGTAAATCGTGTCAAATCAATTCATTCACAAACCAATCACCATTCACTTTTGGACAGTTAA

Coding sequence (CDS)

ATGACCTCTGCAAAATCTTGTGTTACACTAATGTCTACTTCTCTTGACCTCTACACCACTGCACTCCCTTTTAATGACCCATCCCTATACCGCAAATTAGTTGGTTCCTTGCAATATCTTACATTTACTCGCACATATATTGCCTTTTTTGTAAATCGTGTCAAATCAATTCATTCACAAACCAATCACCATTCACTTTTGGACAGTTAA

Protein sequence

MTSAKSCVTLMSTSLDLYTTALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKSIHSQTNHHSLLDS*

Homology

[Close]

BLAST of CsaV3_5G014060 vs. NCBI nr
Match: KAE8648156.1 (hypothetical protein Csa_018512 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 4.4e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MTSAKSCVTLMSTSLDLYTTALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKSIHSQ 60
          MTSAKSCVTLMSTSLDLYTTALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKSIHSQ
Sbjct: 1  MTSAKSCVTLMSTSLDLYTTALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKSIHSQ 60

Query: 61 TNHHSLLDS 70
          TNHHSLLDS
Sbjct: 61 TNHHSLLDS 69

[Close]

BLAST of CsaV3_5G014060 vs. NCBI nr
Match: XP_016902755.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo] >KAA0025330.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   MTSAKSCVTLMSTSLDLYTTALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKS-IHS 60
           MTSAKSC+T MSTSLDLYT A PFNDPSLYR+LVGSLQYLTFTR  IAF VNRV   +H 
Sbjct: 249 MTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPDIAFSVNRVSQFMHK 308

Query: 61  QTNHH 65
            T  H
Sbjct: 309 PTVIH 313

[Close]

BLAST of CsaV3_5G014060 vs. NCBI nr
Match: TYK06454.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1  MTSAKSCVTLMSTSLDLYTTALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKS-IHS 60
          MTSAKSC+T MSTSLDLYT A PFNDPSLYR+LVGSLQYLTFTR  IAF VNRV   +H 
Sbjct: 1  MTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPDIAFSVNRVSQFMHK 60

Query: 61 QTNHH 65
           T  H
Sbjct: 61 PTVIH 65

[Close]

BLAST of CsaV3_5G014060 vs. NCBI nr
Match: TYK08058.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   MTSAKSCVTLMSTSLDLYTTALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKS-IHS 60
           MTSAKSC+T MSTSLDLYT A PFNDPSLYR+LVGSLQYLTFTR  IAF VNRV   +H 
Sbjct: 156 MTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPDIAFSVNRVSQFMHK 215

Query: 61  QTNHH 65
            T  H
Sbjct: 216 PTVIH 220

[Close]

BLAST of CsaV3_5G014060 vs. NCBI nr
Match: KAA0048199.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   MTSAKSCVTLMSTSLDLYTTALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKS-IHS 60
           MTSAKSC+T MSTSLDLYT A PFNDPSLYR+LVGSLQYLTFTR  IAF VNRV   +H 
Sbjct: 382 MTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPDIAFSVNRVSQFMHK 441

Query: 61  QTNHH 65
            T  H
Sbjct: 442 PTVIH 446

[Close]

BLAST of CsaV3_5G014060 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.9e-04
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1    MTSAKSCVTLMSTS--LDLYT-TALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKS- 60
            M +AK   T M+TS  L L++ T LP  DP+ YR +VGSLQYL FTR  +++ VNR+   
Sbjct: 1198 MLTAKPVATPMATSPKLTLHSGTKLP--DPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQY 1257

Query: 61   IHSQTNHH 65
            +H  T+ H
Sbjct: 1258 MHMPTDDH 1263

[Close]

BLAST of CsaV3_5G014060 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.7e-04
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 1    MTSAKSCVTLMSTS--LDLYTTALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKS-I 60
            M +AK   T M+ S  L LY +     DP+ YR +VGSLQYL FTR  I++ VNR+   +
Sbjct: 1215 MITAKPVTTPMAPSPKLSLY-SGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFM 1274

Query: 61   HSQTNHH 65
            H  T  H
Sbjct: 1275 HMPTEEH 1280

[Close]

BLAST of CsaV3_5G014060 vs. ExPASy TrEMBL
Match: A0A5D3CA49 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002060 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-15
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   MTSAKSCVTLMSTSLDLYTTALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKS-IHS 60
           MTSAKSC+T MSTSLDLYT A PFNDPSLYR+LVGSLQYLTFTR  IAF VNRV   +H 
Sbjct: 156 MTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPDIAFSVNRVSQFMHK 215

Query: 61  QTNHH 65
            T  H
Sbjct: 216 PTVIH 220

[Close]

BLAST of CsaV3_5G014060 vs. ExPASy TrEMBL
Match: A0A5D3C550 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold718G00110 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-15
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1  MTSAKSCVTLMSTSLDLYTTALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKS-IHS 60
          MTSAKSC+T MSTSLDLYT A PFNDPSLYR+LVGSLQYLTFTR  IAF VNRV   +H 
Sbjct: 1  MTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPDIAFSVNRVSQFMHK 60

Query: 61 QTNHH 65
           T  H
Sbjct: 61 PTVIH 65

[Close]

BLAST of CsaV3_5G014060 vs. ExPASy TrEMBL
Match: A0A5A7SGQ3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00120 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-15
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   MTSAKSCVTLMSTSLDLYTTALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKS-IHS 60
           MTSAKSC+T MSTSLDLYT A PFNDPSLYR+LVGSLQYLTFTR  IAF VNRV   +H 
Sbjct: 249 MTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPDIAFSVNRVSQFMHK 308

Query: 61  QTNHH 65
            T  H
Sbjct: 309 PTVIH 313

[Close]

BLAST of CsaV3_5G014060 vs. ExPASy TrEMBL
Match: A0A5A7U426 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001100 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-15
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   MTSAKSCVTLMSTSLDLYTTALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKS-IHS 60
           MTSAKSC+T MSTSLDLYT A PFNDPSLYR+LVGSLQYLTFTR  IAF VNRV   +H 
Sbjct: 382 MTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPDIAFSVNRVSQFMHK 441

Query: 61  QTNHH 65
            T  H
Sbjct: 442 PTVIH 446

[Close]

BLAST of CsaV3_5G014060 vs. ExPASy TrEMBL
Match: A0A1S4E450 (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107991867 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-15
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   MTSAKSCVTLMSTSLDLYTTALPFNDPSLYRKLVGSLQYLTFTRTYIAFFVNRVKS-IHS 60
           MTSAKSC+T MSTSLDLYT A PFNDPSLYR+LVGSLQYLTFTR  IAF VNRV   +H 
Sbjct: 249 MTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPDIAFSVNRVSQFMHK 308

Query: 61  QTNHH 65
            T  H
Sbjct: 309 PTVIH 313

The following BLAST results are available for this feature:

BLAST of CsaV3_5G014060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648156.1	4.4e-29	100.00	hypothetical protein Csa_018512 [Cucumis sativus]	[more]
XP_016902755.1	1.4e-14	75.38	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo] >...	[more]
TYK06454.1	1.4e-14	75.38	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK08058.1	1.4e-14	75.38	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0048199.1	1.4e-14	75.38	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_5G014060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	3.9e-04	47.06	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	6.7e-04	44.78	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of CsaV3_5G014060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CA49	6.7e-15	75.38	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3C550	6.7e-15	75.38	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7SGQ3	6.7e-15	75.38	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7U426	6.7e-15	75.38	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S4E450	6.7e-15	75.38	uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of CsaV3_5G014060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G014060.1	CsaV3_5G014060.1	mRNA