CsaV3_5G013350 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G013350
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 9954136 .. 9954496 (-)
RNA-Seq ExpressionCsaV3_5G013350
SyntenyCsaV3_5G013350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTGGATTTGCTTTCACCAGCATCTCATCCTTGGACCGAGGATTCACTTCACCAGCGTCTCGCAGTAGATCTAGGATTCAATTTCACCAGCGTCTCACTCATCATTCCTAACCTAGATTTGGGATTCGCATTCACCAGCATCCGACATCAAGAACGCGTCTCATACTCGCTTATTCTTGGGATTCACTTCTACCAACATCTCATCACCTGGACTTGAGATTCACTTTCACTAGCGTCTCTCGATAGACTTGGGATTTCCACTAGCGTCTTGCAACAAAACACACTACACGTACCACATCGTACCATCATCACGATCAACAACAAGGGAATATTAGCTCAAAAAATTTTCATACAAC

mRNA sequence

ATGACCTTGGATTTGCTTTCACCAGCATCTCATCCTTGGACCGAGGATTCACTTCACCAGCGTCTCGCAGTAGATCTAGGATTCAATTTCACCAGCGTCTCACTCATCATTCCTAACCTAGATTTGGGATTCGCATTCACCAGCATCCGACATCAAGAACGCGTCTCATACTCGCTTATTCTTGGGATTCACTTCTACCAACATCTCATCACCTGGACTTGA

Coding sequence (CDS)

ATGACCTTGGATTTGCTTTCACCAGCATCTCATCCTTGGACCGAGGATTCACTTCACCAGCGTCTCGCAGTAGATCTAGGATTCAATTTCACCAGCGTCTCACTCATCATTCCTAACCTAGATTTGGGATTCGCATTCACCAGCATCCGACATCAAGAACGCGTCTCATACTCGCTTATTCTTGGGATTCACTTCTACCAACATCTCATCACCTGGACTTGA

Protein sequence

MTLDLLSPASHPWTEDSLHQRLAVDLGFNFTSVSLIIPNLDLGFAFTSIRHQERVSYSLILGIHFYQHLITWT*
Homology
[Close]
BLAST of CsaV3_5G013350 vs. NCBI nr
Match: KGN50839.1 (hypothetical protein Csa_004688 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 6.3e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MTLDLLSPASHPWTEDSLHQRLAVDLGFNFTSVSLIIPNLDLGFAFTSIRHQERVSYSLI 60
          MTLDLLSPASHPWTEDSLHQRLAVDLGFNFTSVSLIIPNLDLGFAFTSIRHQERVSYSLI
Sbjct: 1  MTLDLLSPASHPWTEDSLHQRLAVDLGFNFTSVSLIIPNLDLGFAFTSIRHQERVSYSLI 60

Query: 61 LGIHFYQHLITWT 74
          LGIHFYQHLITWT
Sbjct: 61 LGIHFYQHLITWT 73

[Close]
BLAST of CsaV3_5G013350 vs. ExPASy TrEMBL
Match: A0A0A0KPL1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G285040 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.0e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MTLDLLSPASHPWTEDSLHQRLAVDLGFNFTSVSLIIPNLDLGFAFTSIRHQERVSYSLI 60
          MTLDLLSPASHPWTEDSLHQRLAVDLGFNFTSVSLIIPNLDLGFAFTSIRHQERVSYSLI
Sbjct: 1  MTLDLLSPASHPWTEDSLHQRLAVDLGFNFTSVSLIIPNLDLGFAFTSIRHQERVSYSLI 60

Query: 61 LGIHFYQHLITWT 74
          LGIHFYQHLITWT
Sbjct: 61 LGIHFYQHLITWT 73

The following BLAST results are available for this feature:
BLAST of CsaV3_5G013350 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50839.16.3e-34100.00hypothetical protein Csa_004688 [Cucumis sativus][more]
BLAST of CsaV3_5G013350 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G013350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPL13.0e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G285040 PE=4 SV=1[more]
BLAST of CsaV3_5G013350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G013350.1CsaV3_5G013350.1mRNA