CsaV3_5G012480 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G012480
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Sm domain-containing protein
Location	chr5: 7992718 .. 7994981 (+)
RNA-Seq Expression	CsaV3_5G012480
Synteny	CsaV3_5G012480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCGGACTTTCTCAAGTCAATTCGGGGTCGTCCCGTAGTTGTGAAACTCAACTCTGGTGTTGACTACAGAGGTATGGTTGCCTCTACTCTTCATTCACCCTTGGTTTTGGGATAAGTCTGTACATGTTCAATTTTGATTTTAATTCTCAGGGCTGTATCATTAGTTTTAAGAATCTGTAGAAGTTCATGGAAAACAACACTTGCAAATGTTGAGGCACTATCCTATTTTTTGTTAATGAATCTTACTTGTTGATAAATGGCGTTAATAGTCAATCTTTTTGTTTTCTTTCCTTATAAGAATCTGTAGACGTTGAGGGAAACCGACACTTGCAAATGTTGAGATACTATCCTTTTTTGTTGACAAATGGCGTCTTTAGTAAACACTTTTTATTCCATCTAATCTCTTTATCAATTTCTTGTCATTTAAACCTGATTTGTTTGTAATATTTTTAACATAAACCAAGCTTTCATGGAGAAGAAACAAAATAATACAAAAGAAGCATGAAAAAGATACCCAAAAAGCTGAGCCAGAGATACAACAATAACCTAACAAGATAAAAAGGCCTCCAATCCAAAATGATTAGACCAAGAGAATAATCATGGAAGTATTTTGAAACAGATGTCAGAAAGAGGCCTTAAACTTGGAAAGAGCGCATACATTCCTAAGACCTCTCAAACCTCTGATAATTCTCTCATTGATCTCCAACCAATGCTCTATTACATAGCAAATAAGCGAGTTTGCAAAAGCATACAACCCTTATATTGAAAAGACAAATGGAAGAAGGCCTCTTCCATCACAAGGCAACAATCTGATGAAAATATTAAGGGACAATTTTTATGGCGAGCTACATGTATGCTTTGGTGTGGGGGGCTATGGGATAGGATCAATAGTTTTAGAGGTTTGGAACAAGACAGTAGAGATGTTTTGGGTCCTTGTTAGGTTCTATGTTTCTTTCTAATGATGTTATCTATTTTTTTTTTTTAATTATCCTTATGGTCTTGTTTTTTGATTTACTAGATTCCCGTGGCTTTGGGATTTCTTGGACGTGACATTTTCTTCTGAACGAAATTGTAGTTCATTGTTAGTTTTTTATTCCTTCAAATTTATTTAAAAAAGAATAAGGTAGGGTTGTTATTAGGAATCTTATTGTGGGATTAAGAGTATGTTCCTATTTTTATATATTGATTAGATCAATCTTACTTGGGAGAATAGTTAAATGTTACAAGGCTTTCAAAAAAATCAAGCTCACAAAAAAAGGGAGCCAACTACCAGAAGGGGCTTCAACTAAGTAAAATAATGCTTGCTTATATGTTACACATGATCTTTGAAATTGAAAGCCGAAGGAAAGAATGAAACTTATGTAGGTATTGTAGAGAAGTTGTGATTTGTTATAACTAGAGTCGGTGGGAAATGGTAAAGGTATGGATTGATTTAGTTGAGAGCCTCTCAAGTTTGAGTGGAGTGTTCAAGTACCTCAAATTAATTGTGTTCCTCCATCTTTATCTTTTAACGCTATTTTAGCTATTATTTTGGTTCTATCACAATCTGTTATGGCTATGCACTCACCAAAAGTCTCAAAAAAAAAAAAGTTTCAAATTGTTATAGCATGCTGGTTTTTTCAACACCAAGCAATCTTACCAGCTCCGAAGGAAAATACCACGACCATTTAGCCATAAAGCCTCATTCACAAATCCTCAAATTGCCAATACAAAACCCTCCAAACTCAATAGGTATCATAACCCTCTCCTAACTAAATGTGAACTGTTCCTCTCGTCAATACATAACATAAGGAACATGAACATTTGTTTCACAAATGTTGTCTTGATTTTAAACATAACCATTTGTCGTCCTTTGTTTAGGACCTTTATCTTTTCTTGTGCAGTATTACCTATTAACAGTTGAAAAATAGATAAAATTTATGTTGAATTCTAATGTGAAGATCCCATTATATGTTTCATTGCAAAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAAACCGAAGAATATGTAAATGGACAGTTGAAGAACAAATATGGCGATGCTTTCATTCGTGGAAATAACGGTAGATATTGAAAAGAACATCTTCTTTGACAATCTTATCATCTTGACTCAACTCTTGATAATAATATTAAGCTACAATTTGTTAATGCAGTTCTGTACATCAGTACATCAAAGAGGACATTAGCAGAAGGGTCATCTTAG

mRNA sequence

ATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCGGACTTTCTCAAGTCAATTCGGGGTCGTCCCGTAGTTGTGAAACTCAACTCTGGTGTTGACTACAGAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAAACCGAAGAATATGTAAATGGACAGTTGAAGAACAAATATGGCGATGCTTTCATTCGTGGAAATAACGTTCTGTACATCAGTACATCAAAGAGGACATTAGCAGAAGGGTCATCTTAG

Coding sequence (CDS)

ATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCGGACTTTCTCAAGTCAATTCGGGGTCGTCCCGTAGTTGTGAAACTCAACTCTGGTGTTGACTACAGAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAAACCGAAGAATATGTAAATGGACAGTTGAAGAACAAATATGGCGATGCTTTCATTCGTGGAAATAACGTTCTGTACATCAGTACATCAAAGAGGACATTAGCAGAAGGGTCATCTTAG

Protein sequence

MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS*

Homology

[Close]

BLAST of CsaV3_5G012480 vs. NCBI nr
Match: XP_004140401.1 (sm-like protein LSM36B [Cucumis sativus] >XP_008460221.1 PREDICTED: sm-like protein LSM36B [Cucumis melo] >XP_011655091.1 sm-like protein LSM36B [Cucumis sativus] >XP_022155112.1 sm-like protein LSM36B [Momordica charantia] >XP_031742218.1 sm-like protein LSM36B [Cucumis sativus] >XP_031742219.1 sm-like protein LSM36B [Cucumis sativus] >XP_031742220.1 sm-like protein LSM36B [Cucumis sativus] >XP_031742221.1 sm-like protein LSM36B [Cucumis sativus] >XP_038877209.1 sm-like protein LSM36B [Benincasa hispida] >XP_038877210.1 sm-like protein LSM36B [Benincasa hispida] >KGN50806.1 hypothetical protein Csa_018833 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of CsaV3_5G012480 vs. NCBI nr
Match: KAG6600796.1 (Eukaryotic translation initiation factor 2 subunit 3, Y-linked, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.9 bits (468), Expect = 3.2e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
           MSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 531 MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 590

Query: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 591 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 622

[Close]

BLAST of CsaV3_5G012480 vs. NCBI nr
Match: XP_022942809.1 (U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_022942810.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_022942811.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_023513637.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita pepo subsp. pepo] >XP_023513644.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita pepo subsp. pepo] >XP_023513651.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita pepo subsp. pepo] >KAG7031436.1 Sm-like protein LSM36B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.9 bits (468), Expect = 3.2e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of CsaV3_5G012480 vs. NCBI nr
Match: KAG6599859.1 (Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.5 bits (467), Expect = 4.2e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
           MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 93  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 152

Query: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 153 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 184

[Close]

BLAST of CsaV3_5G012480 vs. NCBI nr
Match: XP_023539899.1 (uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 4.2e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
           MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 93  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 152

Query: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 153 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 184

[Close]

BLAST of CsaV3_5G012480 vs. ExPASy Swiss-Prot
Match: O22823 (Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.5e-39
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]

BLAST of CsaV3_5G012480 vs. ExPASy Swiss-Prot
Match: Q9M1Z3 (Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-37
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 6  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
          EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 6  EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65

Query: 66 KYGDAFIRGNNVLYISTSKRTLAEGS 92
          KYGDAFIRGNNVLYIST   T+A+G+
Sbjct: 66 KYGDAFIRGNNVLYISTVNMTVADGA 91

[Close]

BLAST of CsaV3_5G012480 vs. ExPASy Swiss-Prot
Match: P62312 (U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-33
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 9  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
          S   +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2  SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61

Query: 69 DAFIRGNNVLYISTSKRTL 88
          DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80

[Close]

BLAST of CsaV3_5G012480 vs. ExPASy Swiss-Prot
Match: P62313 (U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-33
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 9  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
          S   +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2  SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61

Query: 69 DAFIRGNNVLYISTSKRTL 88
          DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80

[Close]

BLAST of CsaV3_5G012480 vs. ExPASy Swiss-Prot
Match: A8NHT8 (U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) OX=240176 GN=LSM6 PE=3 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-25
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
          T +P DFLK + G+ VVV+L SGVDYRGIL+CLDGYMNIAMEQTEE VNG++ N+YGDAF
Sbjct: 21 TGSPTDFLKGVVGKRVVVRLLSGVDYRGILSCLDGYMNIAMEQTEESVNGKVVNRYGDAF 80

Query: 72 IRGNNVLYISTSK 85
          IRGNNVLYIS  +
Sbjct: 81 IRGNNVLYISADE 93

[Close]

BLAST of CsaV3_5G012480 vs. ExPASy TrEMBL
Match: A0A0A0KSS9 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G266840 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.3e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of CsaV3_5G012480 vs. ExPASy TrEMBL
Match: A0A6J1DNH0 (sm-like protein LSM36B OS=Momordica charantia OX=3673 GN=LOC111022247 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.3e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of CsaV3_5G012480 vs. ExPASy TrEMBL
Match: A0A1S3CBJ6 (sm-like protein LSM36B OS=Cucumis melo OX=3656 GN=LOC103499106 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.3e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of CsaV3_5G012480 vs. ExPASy TrEMBL
Match: A0A6J1FPX7 (U6 snRNA-associated Sm-like protein LSm6 OS=Cucurbita moschata OX=3662 GN=LOC111447731 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of CsaV3_5G012480 vs. ExPASy TrEMBL
Match: A0A6J1JLP5 (uncharacterized protein LOC111485552 OS=Cucurbita maxima OX=3661 GN=LOC111485552 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
           MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 93  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 152

Query: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 153 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 184

[Close]

BLAST of CsaV3_5G012480 vs. TAIR 10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 161.0 bits (406), Expect = 4.6e-40
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]

BLAST of CsaV3_5G012480 vs. TAIR 10
Match: AT2G43810.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 161.0 bits (406), Expect = 4.6e-40
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]

BLAST of CsaV3_5G012480 vs. TAIR 10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-38
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 6  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
          EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 6  EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65

Query: 66 KYGDAFIRGNNVLYISTSKRTLAEGS 92
          KYGDAFIRGNNVLYIST   T+A+G+
Sbjct: 66 KYGDAFIRGNNVLYISTVNMTVADGA 91

[Close]

BLAST of CsaV3_5G012480 vs. TAIR 10
Match: AT4G30220.1 (small nuclear ribonucleoprotein F )

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
          P  FL ++ G+ V+VKL  G++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR 
Sbjct: 8  PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 67

Query: 75 NNVLYI 81
          NNVLY+
Sbjct: 68 NNVLYV 73

[Close]

BLAST of CsaV3_5G012480 vs. TAIR 10
Match: AT4G30220.2 (small nuclear ribonucleoprotein F )

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
          P  FL ++ G+ V+VKL  G++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR 
Sbjct: 16 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 75

Query: 75 NNVLYI 81
          NNVLY+
Sbjct: 76 NNVLYV 81

The following BLAST results are available for this feature:

BLAST of CsaV3_5G012480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140401.1	1.1e-43	100.00	sm-like protein LSM36B [Cucumis sativus] >XP_008460221.1 PREDICTED: sm-like prot...	[more]
KAG6600796.1	3.2e-43	98.91	Eukaryotic translation initiation factor 2 subunit 3, Y-linked, partial [Cucurbi...	[more]
XP_022942809.1	3.2e-43	98.91	U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_022942810.1 U6...	[more]
KAG6599859.1	4.2e-43	98.91	Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023539899.1	4.2e-43	98.91	uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_5G012480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22823	6.5e-39	84.62	Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1	[more]
Q9M1Z3	2.1e-37	87.21	Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1	[more]
P62312	2.4e-33	84.81	U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV...	[more]
P62313	2.4e-33	84.81	U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 S...	[more]
A8NHT8	2.4e-25	73.97	U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea (strain Okayama-...	[more]

BLAST of CsaV3_5G012480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSS9	5.3e-44	100.00	Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G266840 PE=3 SV=...	[more]
A0A6J1DNH0	5.3e-44	100.00	sm-like protein LSM36B OS=Momordica charantia OX=3673 GN=LOC111022247 PE=3 SV=1	[more]
A0A1S3CBJ6	5.3e-44	100.00	sm-like protein LSM36B OS=Cucumis melo OX=3656 GN=LOC103499106 PE=3 SV=1	[more]
A0A6J1FPX7	1.5e-43	98.91	U6 snRNA-associated Sm-like protein LSm6 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JLP5	2.0e-43	98.91	uncharacterized protein LOC111485552 OS=Cucurbita maxima OX=3661 GN=LOC111485552...	[more]

BLAST of CsaV3_5G012480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43810.1	4.6e-40	84.62	Small nuclear ribonucleoprotein family protein	[more]
AT2G43810.2	4.6e-40	84.62	Small nuclear ribonucleoprotein family protein	[more]
AT3G59810.1	1.5e-38	87.21	Small nuclear ribonucleoprotein family protein	[more]
AT4G30220.1	1.5e-14	48.48	small nuclear ribonucleoprotein F	[more]
AT4G30220.2	1.5e-14	48.48	small nuclear ribonucleoprotein F	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 17..82 e-value: 7.8E-21 score: 85.2
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 17..81 e-value: 1.6E-18 score: 66.2
None	No IPR available	GENE3D	2.30.30.100		coord: 5..85 e-value: 2.0E-31 score: 109.4
None	No IPR available	PANTHER	PTHR11021:SF8	SM-LIKE PROTEIN LSM36B-RELATED	coord: 1..90
None	No IPR available	CDD	cd01726	LSm6	coord: 14..81 e-value: 1.08972E-44 score: 136.497
IPR016487	Sm-like protein Lsm6/SmF	PANTHER	PTHR11021	SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F	coord: 1..90
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 14..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G012480.1	CsaV3_5G012480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome