CsaV3_5G009030 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G009030
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 5657384 .. 5657676 (+)
RNA-Seq ExpressionCsaV3_5G009030
SyntenyCsaV3_5G009030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCAAGTTGACAAACTCCAAGTTGCGGTGCAAGAGTTTATAACACAGAATCAAACACTTAAATCGCAAAATATGGGGTTCAAGGCACAAAATCAAGTGATCATGGGGATGATAGAACAGTCTGATAGGCGGAATGATGTGCAATTCAGATCAACATTAAAAGGCCTTCATGCAACAATCTGTAGCATCATTCCAGTACCTAAAGTTCCTCCAGAAATTGCAACACCCCTTACACAAAATTACACTGCAGTACGCAGCGAGGCAGAATCTTCTCGACCACCATCGCAAGCCTAA

mRNA sequence

CAAGTTGACAAACTCCAAGTTGCGGTGCAAGAGTTTATAACACAGAATCAAACACTTAAATCGCAAAATATGGGGTTCAAGGCACAAAATCAAGTGATCATGGGGATGATAGAACAGTCTGATAGGCGGAATGATGTGCAATTCAGATCAACATTAAAAGGCCTTCATGCAACAATCTGTAGCATCATTCCAGTACCTAAAGTTCCTCCAGAAATTGCAACACCCCTTACACAAAATTACACTGCAGTACGCAGCGAGGCAGAATCTTCTCGACCACCATCGCAAGCCTA

Coding sequence (CDS)

CAAGTTGACAAACTCCAAGTTGCGGTGCAAGAGTTTATAACACAGAATCAAACACTTAAATCGCAAAATATGGGGTTCAAGGCACAAAATCAAGTGATCATGGGGATGATAGAACAGTCTGATAGGCGGAATGATGTGCAATTCAGATCAACATTAAAAGGCCTTCATGCAACAATCTGTAGCATCATTCCAGTACCTAAAGTTCCTCCAGAAATTGCAACACCCCTTACACAAAATTACACTGCAGTACGCAGCGAGGCAGAATCTTCTCGACCACCATCGCAAGCCTA

Protein sequence

QVDKLQVAVQEFITQNQTLKSQNMGFKAQNQVIMGMIEQSDRRNDVQFRSTLKGLHATICSIIPVPKVPPEIATPLTQNYTAVRSEAESSRPPSQAX
Homology
[Close]
BLAST of CsaV3_5G009030 vs. NCBI nr
Match: KAE8648020.1 (hypothetical protein Csa_023963, partial [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 2.6e-43
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  QVDKLQVAVQEFITQNQTLKSQNMGFKAQNQVIMGMIEQSDRRNDVQFRSTLKGLHATIC 60
          QVDKLQVAVQEFITQNQTLKSQNMGFKAQNQVIMGMIEQSDRRNDVQFRSTLKGLHATIC
Sbjct: 1  QVDKLQVAVQEFITQNQTLKSQNMGFKAQNQVIMGMIEQSDRRNDVQFRSTLKGLHATIC 60

Query: 61 SIIPVPKVPPEIATPLTQNYTAVRSEAESSRPPSQA 97
          SIIPVPKVPPEIATPLTQNYTAVRSEAESSRPPSQA
Sbjct: 61 SIIPVPKVPPEIATPLTQNYTAVRSEAESSRPPSQA 96

[Close]
BLAST of CsaV3_5G009030 vs. NCBI nr
Match: KAA0041296.1 (hypothetical protein E6C27_scaffold128G002890 [Cucumis melo var. makuwa] >TYK02756.1 hypothetical protein E5676_scaffold145G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 9.8e-11
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 0 

Query: 9  VQEFITQNQTLKSQNMGFKAQNQVIMGMIEQSDRRNDVQFRSTLKGLHATICSIIPVPKV 68
          + E  TQ Q LK+Q    +  N+++MG+ EQ+   NDVQFRS L+ LH TIC+IIP+P+V
Sbjct: 1  MNELKTQTQELKTQLQEIREPNEILMGLTEQNAVWNDVQFRSALRYLHGTICNIIPIPEV 60

Query: 69 PPEIATPLTQNYTAVRSEAESSRPPSQ 96
          P +I+ PL +    VR     S+PP Q
Sbjct: 61 PTKISRPLMRYNPEVRRARNCSQPPRQ 87

[Close]
BLAST of CsaV3_5G009030 vs. NCBI nr
Match: KGN61242.1 (hypothetical protein Csa_006227 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 8.6e-07
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 38 EQSDRRNDVQFRSTLKGLHATICSIIPVPKVPPEIATPLTQNYTAVRSEAESSR 92
          +QS R N+VQFRSTL+ LHA +CSIIPV + P EIATPL+ N  AV +E ESS+
Sbjct: 5  KQSARWNNVQFRSTLRYLHAALCSIIPVHEDPQEIATPLSHNDFAVCNEGESSQ 58

[Close]
BLAST of CsaV3_5G009030 vs. NCBI nr
Match: KGN49653.1 (hypothetical protein Csa_018510 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-05
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 0 

Query: 1   QVDKLQVAVQEFITQNQTLKSQNMGFKAQNQVIMGMIEQSDRRNDVQFRSTLKGLHATIC 60
           Q++ L+  +QE I Q Q L       K QNQVIM M++Q+ R NDVQF S L+ L++++C
Sbjct: 103 QIEGLKAKMQELILQEQEL-------KVQNQVIMEMVKQTTRWNDVQFTSALRYLYSSMC 161

Query: 61  SIIPVP 67
           SIIP P
Sbjct: 163 SIIPTP 161

[Close]
BLAST of CsaV3_5G009030 vs. ExPASy TrEMBL
Match: A0A0A0KM31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G201330 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 24 MGFKAQNQVIMGMIEQSDRRNDVQFRSTLKGLHATICSIIPVPKVPPEIATPLTQNYTAV 83
          MGFKAQNQVIMGMIEQSDRRNDVQFRSTLKGLHATICSIIPVPKVPPEIATPLTQNYTAV
Sbjct: 1  MGFKAQNQVIMGMIEQSDRRNDVQFRSTLKGLHATICSIIPVPKVPPEIATPLTQNYTAV 60

Query: 84 RSEAESSRPPSQA 97
          RSEAESSRPPSQA
Sbjct: 61 RSEAESSRPPSQA 73

[Close]
BLAST of CsaV3_5G009030 vs. ExPASy TrEMBL
Match: A0A5D3BX01 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00100 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.7e-11
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 0 

Query: 9  VQEFITQNQTLKSQNMGFKAQNQVIMGMIEQSDRRNDVQFRSTLKGLHATICSIIPVPKV 68
          + E  TQ Q LK+Q    +  N+++MG+ EQ+   NDVQFRS L+ LH TIC+IIP+P+V
Sbjct: 1  MNELKTQTQELKTQLQEIREPNEILMGLTEQNAVWNDVQFRSALRYLHGTICNIIPIPEV 60

Query: 69 PPEIATPLTQNYTAVRSEAESSRPPSQ 96
          P +I+ PL +    VR     S+PP Q
Sbjct: 61 PTKISRPLMRYNPEVRRARNCSQPPRQ 87

[Close]
BLAST of CsaV3_5G009030 vs. ExPASy TrEMBL
Match: A0A0A0LKG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G073050 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.2e-07
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 38 EQSDRRNDVQFRSTLKGLHATICSIIPVPKVPPEIATPLTQNYTAVRSEAESSR 92
          +QS R N+VQFRSTL+ LHA +CSIIPV + P EIATPL+ N  AV +E ESS+
Sbjct: 5  KQSARWNNVQFRSTLRYLHAALCSIIPVHEDPQEIATPLSHNDFAVCNEGESSQ 58

[Close]
BLAST of CsaV3_5G009030 vs. ExPASy TrEMBL
Match: A0A0A0KJB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G049020 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 0 

Query: 1   QVDKLQVAVQEFITQNQTLKSQNMGFKAQNQVIMGMIEQSDRRNDVQFRSTLKGLHATIC 60
           Q++ L+  +QE I Q Q L       K QNQVIM M++Q+ R NDVQF S L+ L++++C
Sbjct: 103 QIEGLKAKMQELILQEQEL-------KVQNQVIMEMVKQTTRWNDVQFTSALRYLYSSMC 161

Query: 61  SIIPVP 67
           SIIP P
Sbjct: 163 SIIPTP 161

The following BLAST results are available for this feature:
BLAST of CsaV3_5G009030 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648020.12.6e-43100.00hypothetical protein Csa_023963, partial [Cucumis sativus][more]
KAA0041296.19.8e-1145.98hypothetical protein E6C27_scaffold128G002890 [Cucumis melo var. makuwa] >TYK027... [more]
KGN61242.18.6e-0762.96hypothetical protein Csa_006227 [Cucumis sativus][more]
KGN49653.12.8e-0548.48hypothetical protein Csa_018510 [Cucumis sativus][more]
BLAST of CsaV3_5G009030 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G009030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM311.9e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G201330 PE=4 SV=1[more]
A0A5D3BX014.7e-1145.98Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LKG84.2e-0762.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G073050 PE=4 SV=1[more]
A0A0A0KJB91.3e-0548.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G049020 PE=4 SV=1[more]
BLAST of CsaV3_5G009030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G009030.1CsaV3_5G009030.1mRNA