CsaV3_5G009000 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G009000
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 5615611 .. 5615814 (+)
RNA-Seq ExpressionCsaV3_5G009000
SyntenyCsaV3_5G009000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTTTGCGCCCGCATCAAGTTCGGAGTGTTGCGATGCTCTAAGGCAACACCTTGGGGCCATAGATTTACACATAATCTAACCATTATGTTCTATAGTGTTGCACATAGTATCATGGGGCGCCACAAGACTACAAGACAAAAGCTAATAAGCACCGAATTGACAACACTACATTTTACCTTCAAATTGCTCAAAACCTAA

mRNA sequence

ATGAGTCTTTGCGCCCGCATCAAGTTCGGAGTGTTGCGATGCTCTAAGGCAACACCTTGGGGCCATAGATTTACACATAATCTAACCATTATGTTCTATAGTGTTGCACATAGTATCATGGGGCGCCACAAGACTACAAGACAAAAGCTAATAAGCACCGAATTGACAACACTACATTTTACCTTCAAATTGCTCAAAACCTAA

Coding sequence (CDS)

ATGAGTCTTTGCGCCCGCATCAAGTTCGGAGTGTTGCGATGCTCTAAGGCAACACCTTGGGGCCATAGATTTACACATAATCTAACCATTATGTTCTATAGTGTTGCACATAGTATCATGGGGCGCCACAAGACTACAAGACAAAAGCTAATAAGCACCGAATTGACAACACTACATTTTACCTTCAAATTGCTCAAAACCTAA

Protein sequence

MSLCARIKFGVLRCSKATPWGHRFTHNLTIMFYSVAHSIMGRHKTTRQKLISTELTTLHFTFKLLKT*
Homology
[Close]
BLAST of CsaV3_5G009000 vs. NCBI nr
Match: KGN50645.1 (hypothetical protein Csa_021449 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 5.1e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MSLCARIKFGVLRCSKATPWGHRFTHNLTIMFYSVAHSIMGRHKTTRQKLISTELTTLHF 60
          MSLCARIKFGVLRCSKATPWGHRFTHNLTIMFYSVAHSIMGRHKTTRQKLISTELTTLHF
Sbjct: 1  MSLCARIKFGVLRCSKATPWGHRFTHNLTIMFYSVAHSIMGRHKTTRQKLISTELTTLHF 60

Query: 61 TFKLLKT 68
          TFKLLKT
Sbjct: 61 TFKLLKT 67

[Close]
BLAST of CsaV3_5G009000 vs. ExPASy TrEMBL
Match: A0A0A0KLW3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G200560 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.5e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MSLCARIKFGVLRCSKATPWGHRFTHNLTIMFYSVAHSIMGRHKTTRQKLISTELTTLHF 60
          MSLCARIKFGVLRCSKATPWGHRFTHNLTIMFYSVAHSIMGRHKTTRQKLISTELTTLHF
Sbjct: 1  MSLCARIKFGVLRCSKATPWGHRFTHNLTIMFYSVAHSIMGRHKTTRQKLISTELTTLHF 60

Query: 61 TFKLLKT 68
          TFKLLKT
Sbjct: 61 TFKLLKT 67

The following BLAST results are available for this feature:
BLAST of CsaV3_5G009000 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50645.15.1e-30100.00hypothetical protein Csa_021449 [Cucumis sativus][more]
BLAST of CsaV3_5G009000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G009000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLW32.5e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G200560 PE=4 SV=1[more]
BLAST of CsaV3_5G009000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G009000.1CsaV3_5G009000.1mRNA