CsaV3_5G006690 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G006690
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Plant protein 1589 of unknown function
Location	chr5: 4490388 .. 4491344 (-)
RNA-Seq Expression	CsaV3_5G006690
Synteny	CsaV3_5G006690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCGTCGCTGTAAAGTTCTCAAACCCCTTTTCACTTCCAAATCTATTTGTTATTTTATATATATATCATACATATCATACAATCTATTTCTTTTAAATATACCTTCCTGCCTTAGATTGTGTTATATAATAACAATACAGACAATTTTAATGGCTGATTCTTCTGCTGCTTACATTCATATGGTAACGTTTTCACTTTCTCTTTCATATTAATTACTATAAATGTCTATCTTCTTTATATATTCATTCCCTTTCCCTTATATATAGGTACAACACTTGATCGAAAAGTGCTTGATCTTCCATATGAATAAAGATGAGTGTATTGAAGCTCTCTCCAAACATGCTAACATCAGCCCCATCATCACATCTACTGGTTCGTACGTTCACATTTTTTCTCCTCTCTTCTTCCACTCCTCATCATTTTCATCACAACCTAGATCACCAGTACTACTGCAGACAAATTGTATACACACACACACACATATATATATAGATGTAGATTCTTTGATCTTATAGGTGATTGTTTTAATCTGTTGTTACAGTGTGGAAGGAGTTGGAGAAAGAAAATAGGGAATTCTTTGAAGCTTATTCAGAATGTAAGGGAAGAAATGATAGAATATTGGCTGAAGAAGAGACAAGGAAGTTAATCCAAAGGATGATGTCTAAACATAGTGATGACTAGTTAGCTAAAATATTTGATCTACCTAGCTATATACACATGCATGCACCAAATTAACTAGTGATTATGACTTTTTCATTCTTTTTCTCTCTGCATGTACACACAATATTAAAAATATATATACACAAATATTAGAATAACACAATTTATCCAAATAATAACAATAGTTATATACATTATTTTCTTTCCATTTTAAACACTTCCACATATAGATACAATCAAAATAATATATTATTATTAGTTTGAATTAACATTGTCATCTTTTTACTCAATTTTAG

mRNA sequence

ATGGCTGATTCTTCTGCTGCTTACATTCATATGGTACAACACTTGATCGAAAAGTGCTTGATCTTCCATATGAATAAAGATGAGTGTATTGAAGCTCTCTCCAAACATGCTAACATCAGCCCCATCATCACATCTACTGTGTGGAAGGAGTTGGAGAAAGAAAATAGGGAATTCTTTGAAGCTTATTCAGAATGTAAGGGAAGAAATGATAGAATATTGGCTGAAGAAGAGACAAGGAAGTTAATCCAAAGGATGATGTCTAAACATAGTGATGACTAG

Coding sequence (CDS)

ATGGCTGATTCTTCTGCTGCTTACATTCATATGGTACAACACTTGATCGAAAAGTGCTTGATCTTCCATATGAATAAAGATGAGTGTATTGAAGCTCTCTCCAAACATGCTAACATCAGCCCCATCATCACATCTACTGTGTGGAAGGAGTTGGAGAAAGAAAATAGGGAATTCTTTGAAGCTTATTCAGAATGTAAGGGAAGAAATGATAGAATATTGGCTGAAGAAGAGACAAGGAAGTTAATCCAAAGGATGATGTCTAAACATAGTGATGACTAG

Protein sequence

MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFEAYSECKGRNDRILAEEETRKLIQRMMSKHSDD*

Homology

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BLAST of CsaV3_5G006690 vs. NCBI nr
Match: XP_004147706.1 (uncharacterized protein LOC101203417 [Cucumis sativus] >KGN50512.1 hypothetical protein Csa_000273 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 2.2e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYSECKGRNDRILAEEETRKLIQRMMSKHSDD 93
          AYSECKGRNDRILAEEETRKLIQRMMSKHSDD
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMSKHSDD 92

[Close]

BLAST of CsaV3_5G006690 vs. NCBI nr
Match: XP_008461625.1 (PREDICTED: uncharacterized protein LOC103500185 [Cucumis melo] >KAA0062222.1 uncharacterized protein E6C27_scaffold321G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 2.1e-42
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISP+ITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPVITSTVWKELEKENREFFE 60

Query: 61 AYSECKGRNDRILAEEETRKLIQR-MMSKHSDD 93
          AYSECKGRNDRILAEEETRKLIQR MMSKHSD+
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMMSKHSDE 93

[Close]

BLAST of CsaV3_5G006690 vs. NCBI nr
Match: XP_038893010.1 (uncharacterized protein LOC120081903 [Benincasa hispida])

HSP 1 Score: 178.3 bits (451), Expect = 3.0e-41
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQHLI+KCLIFHMNK+ECIEALSKHANISPIITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIDKCLIFHMNKEECIEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYSECKGRNDRILAEEETRKLIQRMMSKHSDD 93
          AYSE  GRNDRILAEEETR+LIQRMMSKHSDD
Sbjct: 61 AYSESMGRNDRILAEEETRQLIQRMMSKHSDD 92

[Close]

BLAST of CsaV3_5G006690 vs. NCBI nr
Match: XP_022139201.1 (uncharacterized protein LOC111010170 [Momordica charantia])

HSP 1 Score: 170.2 bits (430), Expect = 8.2e-39
Identity = 82/92 (89.13%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQHLIEKCLIFHMNKDEC+EALSKHANISPIITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECMEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYSECKGRNDRILAEEETRKLIQRMMSKHSDD 93
          AY E + +NDRILAEEETR+LI+RM+SK SDD
Sbjct: 61 AYXESRNKNDRILAEEETRQLIZRMISKDSDD 92

[Close]

BLAST of CsaV3_5G006690 vs. NCBI nr
Match: XP_022957149.1 (uncharacterized protein LOC111458619 [Cucurbita moschata])

HSP 1 Score: 165.6 bits (418), Expect = 2.0e-37
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1   MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60
           MADSSAAYIHMVQ+LIE CLIFHMNK+ECIEALSK+ANI+PIIT TVWKELEKENREFFE
Sbjct: 11  MADSSAAYIHMVQYLIENCLIFHMNKEECIEALSKYANITPIITETVWKELEKENREFFE 70

Query: 61  AYSECKGRNDRILAEEETRKLIQRMMSKHSDD 93
           AY E + RNDRILAEEETR+LIQRMMSKH+DD
Sbjct: 71  AYLESRSRNDRILAEEETRQLIQRMMSKHTDD 102

[Close]

BLAST of CsaV3_5G006690 vs. ExPASy TrEMBL
Match: A0A0A0KQ71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G179770 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYSECKGRNDRILAEEETRKLIQRMMSKHSDD 93
          AYSECKGRNDRILAEEETRKLIQRMMSKHSDD
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMSKHSDD 92

[Close]

BLAST of CsaV3_5G006690 vs. ExPASy TrEMBL
Match: A0A5A7V1X1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00180 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-42
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISP+ITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPVITSTVWKELEKENREFFE 60

Query: 61 AYSECKGRNDRILAEEETRKLIQR-MMSKHSDD 93
          AYSECKGRNDRILAEEETRKLIQR MMSKHSD+
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMMSKHSDE 93

[Close]

BLAST of CsaV3_5G006690 vs. ExPASy TrEMBL
Match: A0A1S3CGF7 (uncharacterized protein LOC103500185 OS=Cucumis melo OX=3656 GN=LOC103500185 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-42
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISP+ITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPVITSTVWKELEKENREFFE 60

Query: 61 AYSECKGRNDRILAEEETRKLIQR-MMSKHSDD 93
          AYSECKGRNDRILAEEETRKLIQR MMSKHSD+
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMMSKHSDE 93

[Close]

BLAST of CsaV3_5G006690 vs. ExPASy TrEMBL
Match: A0A6J1CBZ2 (uncharacterized protein LOC111010170 OS=Momordica charantia OX=3673 GN=LOC111010170 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.7e-39
Identity = 82/92 (89.13%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQHLIEKCLIFHMNKDEC+EALSKHANISPIITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECMEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYSECKGRNDRILAEEETRKLIQRMMSKHSDD 93
          AY E + +NDRILAEEETR+LI+RM+SK SDD
Sbjct: 61 AYXESRNKNDRILAEEETRQLIERMISKDSDD 92

[Close]

BLAST of CsaV3_5G006690 vs. ExPASy TrEMBL
Match: A0A6J1H147 (uncharacterized protein LOC111458619 OS=Cucurbita moschata OX=3662 GN=LOC111458619 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.7e-38
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1   MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60
           MADSSAAYIHMVQ+LIE CLIFHMNK+ECIEALSK+ANI+PIIT TVWKELEKENREFFE
Sbjct: 11  MADSSAAYIHMVQYLIENCLIFHMNKEECIEALSKYANITPIITETVWKELEKENREFFE 70

Query: 61  AYSECKGRNDRILAEEETRKLIQRMMSKHSDD 93
           AY E + RNDRILAEEETR+LIQRMMSKH+DD
Sbjct: 71  AYLESRSRNDRILAEEETRQLIQRMMSKHTDD 102

[Close]

BLAST of CsaV3_5G006690 vs. TAIR 10
Match: AT3G55240.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-31
Identity = 65/96 (67.71%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MAD-SSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFF 60
          MAD SSA+YIHMVQH+IEKCLIFHM+K+EC+EALSKHANI+P+ITSTVWKELEKEN+EFF
Sbjct: 1  MADSSSASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFF 60

Query: 61 EAYSECKGRNDRILAEEETRKLIQRMM---SKHSDD 93
          +AY E + + ++ ++EEET ++IQ+++   SK SDD
Sbjct: 61 KAYEERQSKQEQ-MSEEETNQMIQKIISDSSKESDD 95

[Close]

BLAST of CsaV3_5G006690 vs. TAIR 10
Match: AT5G02580.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 107.1 bits (266), Expect = 7.9e-24
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 4  SSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFEAYS 63
          S A+YIH+V HLIE+C++F+M K+EC++AL KHANI PIITSTVWKEL KEN+EFFEAY 
Sbjct: 7  SQASYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITSTVWKELAKENKEFFEAYE 66

Query: 64 ECKGRNDRILAEEETRKLIQRMMSK 89
              R + I  E+ET + I+ ++S+
Sbjct: 67 R---RREEIPTEKETARRIRDLLSR 88

[Close]

BLAST of CsaV3_5G006690 vs. TAIR 10
Match: AT3G28990.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-23
Identity = 52/84 (61.90%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 4  SSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFEAYS 63
          S A YIH+VQH+IE CL F+M+K+EC+EALS++ANI+PIITSTVWKEL KEN++FFE Y 
Sbjct: 5  SPAVYIHLVQHMIETCLTFNMSKEECMEALSENANINPIITSTVWKELVKENKDFFETY- 64

Query: 64 ECKGRNDRILAEEETRKLIQRMMS 88
          E K      ++EEET +LIQ ++S
Sbjct: 65 EQKLMKKESMSEEETNQLIQNIIS 87

[Close]

BLAST of CsaV3_5G006690 vs. TAIR 10
Match: AT1G10657.2 (Plant protein 1589 of unknown function )

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-15
Identity = 30/56 (53.57%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 7  AYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFEAY 63
          +YI MVQH+IE+C++  M +DEC++AL  HA+I P++T TVW+ L++EN++FFE Y
Sbjct: 22 SYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKDFFETY 77

[Close]

BLAST of CsaV3_5G006690 vs. TAIR 10
Match: AT1G10657.3 (Plant protein 1589 of unknown function )

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-15
Identity = 30/56 (53.57%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 7  AYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFEAY 63
          +YI MVQH+IE+C++  M +DEC++AL  HA+I P++T TVW+ L++EN++FFE Y
Sbjct: 22 SYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKDFFETY 77

The following BLAST results are available for this feature:

BLAST of CsaV3_5G006690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147706.1	2.2e-44	100.00	uncharacterized protein LOC101203417 [Cucumis sativus] >KGN50512.1 hypothetical ...	[more]
XP_008461625.1	2.1e-42	96.77	PREDICTED: uncharacterized protein LOC103500185 [Cucumis melo] >KAA0062222.1 unc...	[more]
XP_038893010.1	3.0e-41	94.57	uncharacterized protein LOC120081903 [Benincasa hispida]	[more]
XP_022139201.1	8.2e-39	89.13	uncharacterized protein LOC111010170 [Momordica charantia]	[more]
XP_022957149.1	2.0e-37	86.96	uncharacterized protein LOC111458619 [Cucurbita moschata]	[more]

BLAST of CsaV3_5G006690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G006690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ71	1.1e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G179770 PE=4 SV=1	[more]
A0A5A7V1X1	1.0e-42	96.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CGF7	1.0e-42	96.77	uncharacterized protein LOC103500185 OS=Cucumis melo OX=3656 GN=LOC103500185 PE=...	[more]
A0A6J1CBZ2	6.7e-39	89.13	uncharacterized protein LOC111010170 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1H147	9.7e-38	86.96	uncharacterized protein LOC111458619 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]

BLAST of CsaV3_5G006690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55240.1	1.8e-31	67.71	Plant protein 1589 of unknown function	[more]
AT5G02580.1	7.9e-24	58.82	Plant protein 1589 of unknown function	[more]
AT3G28990.1	1.3e-23	61.90	Plant protein 1589 of unknown function	[more]
AT1G10657.2	1.8e-15	53.57	Plant protein 1589 of unknown function	[more]
AT1G10657.3	1.8e-15	53.57	Plant protein 1589 of unknown function	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006476	Conserved hypothetical protein CHP01589, plant	TIGRFAM	TIGR01589	TIGR01589	coord: 9..63 e-value: 7.8E-25 score: 84.7
IPR006476	Conserved hypothetical protein CHP01589, plant	PFAM	PF09713	A_thal_3526	coord: 12..63 e-value: 6.3E-27 score: 93.6
IPR006476	Conserved hypothetical protein CHP01589, plant	PANTHER	PTHR31871	OS02G0137100 PROTEIN	coord: 1..88
None	No IPR available	PANTHER	PTHR31871:SF18	ANGIOTENSIN-CONVERTING ENZYME 2-RELATED	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G006690.1	CsaV3_5G006690.1	mRNA