CsaV3_5G004620 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G004620
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	stress-induced protein KIN2-like
Location	chr5: 3008707 .. 3009372 (-)
RNA-Seq Expression	CsaV3_5G004620
Synteny	CsaV3_5G004620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTACACAATTGTAGTTTTAAAAAATCCCTTCAAGTTCTCAATTTCTTTCTAAATTAAAATTCTTCTTTTGAAAGAATGGCAGATAACTCCCAGAACATGAGCTACCAGATTGGAGAAGCCAAGGGTCAAGCACAGGTTCACTACCTCATCTTATCTCATCGTTCTTTATATTTAGCCACAAAAACTTAAAATGATTATCATAATATAAAAACAAGTTTCTAGACACACTTATTTTTTGTCTTCTTAAGAAGATTAAGGAGTTATTTGATCGAGACATGTTGAATTATGGGTGATAATGTATAGGAGAAAGCAAGCAATATGATGGAGAAGGCGAGTGATGCAGCTCAATCAGCTAAAGAATCAATACAAGAAGGAGGACAGCAGATGAAGGCCAAAGCACAAGGTGCAGCTGATGCTGTCAAGGATGCCACCGGAATGAACAAATGAACAAGCCACTACTATGAATATCACATATGATAGCTTTACAAAAACAAAATGCTATCGTATAGACTTTCTATAGCGTTTTATTTTCACTTTCCCGTTTGAAGCTCCTTATTGCTTCCTTCATTTTAGGTTTTCCTTGAGCTATATTATAGCTATTTCTTGTGTTCTCCTCTCAATAAGAATAAAAGATAATTGAAGAAGGTTCAACTTATGCTGTCA

mRNA sequence

ATGGCAGATAACTCCCAGAACATGAGCTACCAGATTGGAGAAGCCAAGGGTCAAGCACAGGAGAAAGCAAGCAATATGATGGAGAAGGCGAGTGATGCAGCTCAATCAGCTAAAGAATCAATACAAGAAGGAGGACAGCAGATGAAGGCCAAAGCACAAGGTGCAGCTGATGCTGTCAAGGATGCCACCGGAATGAACAAATGA

Coding sequence (CDS)

ATGGCAGATAACTCCCAGAACATGAGCTACCAGATTGGAGAAGCCAAGGGTCAAGCACAGGAGAAAGCAAGCAATATGATGGAGAAGGCGAGTGATGCAGCTCAATCAGCTAAAGAATCAATACAAGAAGGAGGACAGCAGATGAAGGCCAAAGCACAAGGTGCAGCTGATGCTGTCAAGGATGCCACCGGAATGAACAAATGA

Protein sequence

MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVKDATGMNK*

Homology

[Close]

BLAST of CsaV3_5G004620 vs. NCBI nr
Match: XP_004152386.1 (stress-induced protein KIN2 [Cucumis sativus] >KGN50292.1 hypothetical protein Csa_000676 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 9.2e-24
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004620 vs. NCBI nr
Match: XP_008437025.1 (PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0043490.1 stress-induced protein KIN2-like [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-20
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          MADNSQ MSY +GEAKGQAQEKASNMM+KASD AQSAKES+QE GQQMKAKAQGAADAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004620 vs. NCBI nr
Match: XP_022159706.1 (stress-induced protein KIN2-like [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 2.8e-20
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          MADNSQ MSY  GEAKGQAQEKASNMM+KASDAAQSAKES+QE GQQ+KAKAQGAADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004620 vs. NCBI nr
Match: XP_022159716.1 (stress-induced protein KIN2-like [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          MADNSQ MSY  GEAKGQAQEKASNMM+KASDAAQSAKES+QE GQQ+KAKAQG ADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004620 vs. NCBI nr
Match: XP_004152387.1 (stress-induced protein KIN2 [Cucumis sativus] >KGN50291.1 hypothetical protein Csa_000602 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-19
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          MADNS+ MSY IGEAKGQAQEKASN+M+KA D AQSAKES+QE GQQMKAKAQGAADAVK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004620 vs. ExPASy Swiss-Prot
Match: P31169 (Stress-induced protein KIN2 OS=Arabidopsis thaliana OX=3702 GN=KIN2 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 27/67 (40.30%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          M++ ++N ++Q G+A G+A+EK++ +++KA DAA +A  S Q+ G+ +   A G  + VK
Sbjct: 1  MSETNKN-AFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVK 60

Query: 61 DATGMNK 68
          D TG+NK
Sbjct: 61 DKTGLNK 66

[Close]

BLAST of CsaV3_5G004620 vs. ExPASy TrEMBL
Match: A0A0A0KPD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165870 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.5e-24
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004620 vs. ExPASy TrEMBL
Match: A0A5A7TJP0 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00300 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.9e-21
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          MADNSQ MSY +GEAKGQAQEKASNMM+KASD AQSAKES+QE GQQMKAKAQGAADAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004620 vs. ExPASy TrEMBL
Match: A0A1S3ASP1 (stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103482578 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.9e-21
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          MADNSQ MSY +GEAKGQAQEKASNMM+KASD AQSAKES+QE GQQMKAKAQGAADAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004620 vs. ExPASy TrEMBL
Match: A0A6J1E4Q8 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-20
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          MADNSQ MSY  GEAKGQAQEKASNMM+KASDAAQSAKES+QE GQQ+KAKAQGAADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004620 vs. ExPASy TrEMBL
Match: A0A6J1E4S0 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026055 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.7e-20
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          MADNSQ MSY  GEAKGQAQEKASNMM+KASDAAQSAKES+QE GQQ+KAKAQG ADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004620 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-18
Identity = 48/67 (71.64%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          M+ NSQN+S+Q G+AKGQ QEKAS MM+KAS+AAQSAKES++E GQQ+K KAQGA ++VK
Sbjct: 1  MSSNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

Query: 61 DATGMNK 68
          +ATGMNK
Sbjct: 61 NATGMNK 67

[Close]

BLAST of CsaV3_5G004620 vs. TAIR 10
Match: AT5G53820.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-17
Identity = 45/67 (67.16%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          M++NSQ+MS+  G+AKGQ QEKASN+++KAS+AAQSAKESIQEGGQQ+K KAQGA++ +K
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIK 60

Query: 61 DATGMNK 68
          + TG++K
Sbjct: 61 EKTGISK 67

[Close]

BLAST of CsaV3_5G004620 vs. TAIR 10
Match: AT3G02480.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-16
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 3  DNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVKDA 62
          DN QN SYQ G+A GQ +EKA  MM+KA DAA SA++S+Q+ GQQMK KAQGAAD VKD 
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDK 61

Query: 63 TGMNK 68
          TGMNK
Sbjct: 62 TGMNK 66

[Close]

BLAST of CsaV3_5G004620 vs. TAIR 10
Match: AT5G15970.1 (stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) )

HSP 1 Score: 45.4 bits (106), Expect = 2.1e-05
Identity = 27/67 (40.30%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          M++ ++N ++Q G+A G+A+EK++ +++KA DAA +A  S Q+ G+ +   A G  + VK
Sbjct: 1  MSETNKN-AFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVK 60

Query: 61 DATGMNK 68
          D TG+NK
Sbjct: 61 DKTGLNK 66

[Close]

BLAST of CsaV3_5G004620 vs. TAIR 10
Match: AT5G15960.1 (stress-responsive protein (KIN1) / stress-induced protein (KIN1) )

HSP 1 Score: 42.4 bits (98), Expect = 1.7e-04
Identity = 25/67 (37.31%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60
          M++ ++N ++Q G+  G+A+EK++ +++KA DAA  A    Q+ G+ +   A G  + VK
Sbjct: 1  MSETNKN-AFQAGQTAGKAEEKSNVLLDKAKDAAAGAGAGAQQAGKSVSDAAAGGVNFVK 60

Query: 61 DATGMNK 68
          D TG+NK
Sbjct: 61 DKTGLNK 66

The following BLAST results are available for this feature:

BLAST of CsaV3_5G004620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152386.1	9.2e-24	100.00	stress-induced protein KIN2 [Cucumis sativus] >KGN50292.1 hypothetical protein C...	[more]
XP_008437025.1	1.6e-20	89.55	PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0043490.1 stress-...	[more]
XP_022159706.1	2.8e-20	89.55	stress-induced protein KIN2-like [Momordica charantia]	[more]
XP_022159716.1	1.4e-19	88.06	stress-induced protein KIN2-like [Momordica charantia]	[more]
XP_004152387.1	1.8e-19	86.57	stress-induced protein KIN2 [Cucumis sativus] >KGN50291.1 hypothetical protein C...	[more]

BLAST of CsaV3_5G004620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31169	2.9e-04	40.30	Stress-induced protein KIN2 OS=Arabidopsis thaliana OX=3702 GN=KIN2 PE=2 SV=1	[more]

BLAST of CsaV3_5G004620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPD4	4.5e-24	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165870 PE=4 SV=1	[more]
A0A5A7TJP0	7.9e-21	89.55	Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3ASP1	7.9e-21	89.55	stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103482578 PE=4 SV...	[more]
A0A6J1E4Q8	1.3e-20	89.55	stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 ...	[more]
A0A6J1E4S0	6.7e-20	88.06	stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026055 ...	[more]

BLAST of CsaV3_5G004620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38760.1	2.8e-18	71.64	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G53820.1	1.1e-17	67.16	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	2.6e-16	69.23	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G15970.1	2.1e-05	40.30	stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsi...	[more]
AT5G15960.1	1.7e-04	37.31	stress-responsive protein (KIN1) / stress-induced protein (KIN1)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1430		coord: 2..46 e-value: 2.3E-5 score: 26.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	PANTHER	PTHR34191:SF15	BNAA01G32930D PROTEIN	coord: 1..67
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G004620.1	CsaV3_5G004620.1	mRNA