CsaV3_5G004610 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G004610
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	stress-induced protein KIN2-like
Location	chr5: 3006278 .. 3006987 (+)
RNA-Seq Expression	CsaV3_5G004610
Synteny	CsaV3_5G004610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTTATTCTGATCTAAAATTCCTTGTAAGTTCTAAGTTCTAAGCTCTCATCTTTGTGTTTTTGGAATTTCTCTATAAAAAGAAAATGGCAGACAACTCTGAGAAGATGAGCTACCACATTGGAGAAGCCAAGGGCCAAGCCCAGGTTCACTATACCCTTCCTACTTTTCAATACTTTATTAAACTTCACATATTTGGCTCGACTAGTTATTTTGTCTCTGAAATATGTTATAAAATTTAAAATAAAAAATAATTAATAACTAGACAATCCAACCCATTCTAAAAACACCCTGATCAACTCAACTTATAGAACACCGTATTTGAAATCAAGAATTGATTGGTAATATAATGATTTATATTACGTGATATTGTAGGAGAAGGCAAGCAACCTGATGGACAAGGCAGGTGATACAGCCCAATCAGCAAAAGAGTCGATGCAAGAGGCAGGACAGCAGATGAAAGCTAAGGCACAAGGTGCAGCCGATGCAGTCAAAGATGCCACTGGCATGAACAAATGATATTTGTTTTATTGATCAGCCCATTTTTTGAGTTCTGTTATCAGTGACTTTTTCGTTTTTGTTCTGTTTTTGGCTAAAGCTCCAAAAGGCCTTTGAGCCTCATTCTTCATAATTTGTGTGGAAAAGATCAAAGTGCTAATAATAATTGAGTGTAGAGCCAAAATATTTTGCTTCTTTTCTGTATCACCTA

mRNA sequence

ATGGCAGACAACTCTGAGAAGATGAGCTACCACATTGGAGAAGCCAAGGGCCAAGCCCAGGAGAAGGCAAGCAACCTGATGGACAAGGCAGGTGATACAGCCCAATCAGCAAAAGAGTCGATGCAAGAGGCAGGACAGCAGATGAAAGCTAAGGCACAAGGTGCAGCCGATGCAGTCAAAGATGCCACTGGCATGAACAAATGA

Coding sequence (CDS)

ATGGCAGACAACTCTGAGAAGATGAGCTACCACATTGGAGAAGCCAAGGGCCAAGCCCAGGAGAAGGCAAGCAACCTGATGGACAAGGCAGGTGATACAGCCCAATCAGCAAAAGAGTCGATGCAAGAGGCAGGACAGCAGATGAAAGCTAAGGCACAAGGTGCAGCCGATGCAGTCAAAGATGCCACTGGCATGAACAAATGA

Protein sequence

MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVKDATGMNK*

Homology

[Close]

BLAST of CsaV3_5G004610 vs. NCBI nr
Match: XP_004152387.1 (stress-induced protein KIN2 [Cucumis sativus] >KGN50291.1 hypothetical protein Csa_000602 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 8.4e-25
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60
          MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004610 vs. NCBI nr
Match: XP_008437025.1 (PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0043490.1 stress-induced protein KIN2-like [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60
          MADNS+KMSYH+GEAKGQAQEKASN+MDKA DTAQSAKESMQEAGQQMKAKAQGAADAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004610 vs. NCBI nr
Match: XP_022159716.1 (stress-induced protein KIN2-like [Momordica charantia])

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60
          MADNS+KMSYH GEAKGQAQEKASN+MDKA D AQSAKESMQEAGQQ+KAKAQG ADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004610 vs. NCBI nr
Match: XP_022159706.1 (stress-induced protein KIN2-like [Momordica charantia])

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60
          MADNS+KMSYH GEAKGQAQEKASN+MDKA D AQSAKES+QEAGQQ+KAKAQGAADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004610 vs. NCBI nr
Match: XP_022134237.1 (stress-induced protein KIN2-like [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-21
Identity = 60/67 (89.55%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60
          MADNS+KM+Y+ GEAKG+AQEKASNLMDKA DTAQSAKESMQEAGQQ+KAKAQGAADAVK
Sbjct: 1  MADNSQKMAYNAGEAKGEAQEKASNLMDKASDTAQSAKESMQEAGQQLKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004610 vs. ExPASy TrEMBL
Match: A0A0A0KRE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.0e-25
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60
          MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004610 vs. ExPASy TrEMBL
Match: A0A5A7TJP0 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00300 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-23
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60
          MADNS+KMSYH+GEAKGQAQEKASN+MDKA DTAQSAKESMQEAGQQMKAKAQGAADAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004610 vs. ExPASy TrEMBL
Match: A0A1S3ASP1 (stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103482578 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-23
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60
          MADNS+KMSYH+GEAKGQAQEKASN+MDKA DTAQSAKESMQEAGQQMKAKAQGAADAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004610 vs. ExPASy TrEMBL
Match: A0A6J1E4Q8 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.3e-22
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60
          MADNS+KMSYH GEAKGQAQEKASN+MDKA D AQSAKES+QEAGQQ+KAKAQGAADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004610 vs. ExPASy TrEMBL
Match: A0A6J1E4S0 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026055 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.3e-22
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60
          MADNS+KMSYH GEAKGQAQEKASN+MDKA D AQSAKESMQEAGQQ+KAKAQG ADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CsaV3_5G004610 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-16
Identity = 43/67 (64.18%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60
          M+ NS+ +S+  G+AKGQ QEKAS +MDKA + AQSAKES++E GQQ+K KAQGA ++VK
Sbjct: 1  MSSNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

Query: 61 DATGMNK 68
          +ATGMNK
Sbjct: 61 NATGMNK 67

[Close]

BLAST of CsaV3_5G004610 vs. TAIR 10
Match: AT5G53820.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-16
Identity = 42/67 (62.69%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60
          M++NS+ MS++ G+AKGQ QEKASNL+DKA + AQSAKES+QE GQQ+K KAQGA++ +K
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIK 60

Query: 61 DATGMNK 68
          + TG++K
Sbjct: 61 EKTGISK 67

[Close]

BLAST of CsaV3_5G004610 vs. TAIR 10
Match: AT3G02480.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 77.4 bits (189), Expect = 4.9e-15
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 3  DNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVKDA 62
          DN +  SY  G+A GQ +EKA  +MDKA D A SA++S+Q+ GQQMK KAQGAAD VKD 
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDK 61

Query: 63 TGMNK 68
          TGMNK
Sbjct: 62 TGMNK 66

[Close]

BLAST of CsaV3_5G004610 vs. TAIR 10
Match: AT1G52690.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.3e-04
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60
          MA + E+ SY  GE +G+AQEK    M   GD  Q+AK+  QE  Q  + KA   A + K
Sbjct: 1  MASHQEQ-SYKAGETRGKAQEKTGEAMGTMGDKTQAAKDKTQETAQSAQQKAHETAQSAK 60

Query: 61 DAT 64
          D T
Sbjct: 61 DKT 62

[Close]

BLAST of CsaV3_5G004610 vs. TAIR 10
Match: AT1G52690.2 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.3e-04
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60
          MA + E+ SY  GE +G+AQEK    M   GD  Q+AK+  QE  Q  + KA   A + K
Sbjct: 1  MASHQEQ-SYKAGETRGKAQEKTGEAMGTMGDKTQAAKDKTQETAQSAQQKAHETAQSAK 60

Query: 61 DAT 64
          D T
Sbjct: 61 DKT 62

The following BLAST results are available for this feature:

BLAST of CsaV3_5G004610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152387.1	8.4e-25	100.00	stress-induced protein KIN2 [Cucumis sativus] >KGN50291.1 hypothetical protein C...	[more]
XP_008437025.1	2.1e-23	94.03	PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0043490.1 stress-...	[more]
XP_022159716.1	1.9e-21	89.55	stress-induced protein KIN2-like [Momordica charantia]	[more]
XP_022159706.1	1.9e-21	89.55	stress-induced protein KIN2-like [Momordica charantia]	[more]
XP_022134237.1	2.5e-21	89.55	stress-induced protein KIN2-like [Momordica charantia]	[more]

BLAST of CsaV3_5G004610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G004610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRE1	4.0e-25	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165860 PE=4 SV=1	[more]
A0A5A7TJP0	1.0e-23	94.03	Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3ASP1	1.0e-23	94.03	stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103482578 PE=4 SV...	[more]
A0A6J1E4Q8	9.3e-22	89.55	stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 ...	[more]
A0A6J1E4S0	9.3e-22	89.55	stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026055 ...	[more]

BLAST of CsaV3_5G004610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38760.1	1.2e-16	64.18	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G53820.1	1.2e-16	62.69	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	4.9e-15	63.08	Late embryogenesis abundant protein (LEA) family protein	[more]
AT1G52690.1	2.3e-04	42.86	Late embryogenesis abundant protein (LEA) family protein	[more]
AT1G52690.2	2.3e-04	42.86	Late embryogenesis abundant protein (LEA) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1430		coord: 1..46 e-value: 3.6E-6 score: 29.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	PANTHER	PTHR34191:SF15	BNAA01G32930D PROTEIN	coord: 1..67
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G004610.1	CsaV3_5G004610.1	mRNA