CsaV3_5G001930 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G001930
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	30S ribosomal protein S6 alpha, chloroplastic
Location	chr5: 1139394 .. 1142644 (-)
RNA-Seq Expression	CsaV3_5G001930
Synteny	CsaV3_5G001930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACTTCTCCTCTCTCCTCCAAATCCCCTTTCCTTACCCCATTCACGAATCAAATTTCTTTCCCCTTTGCCCTCAAACTCTCCAAACCCCTCTTTTCTCCCTACGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTAAAAGCGCAAACTCTTGAATTTTCAGGTTCGTTCTTCGAAGGTGGGCTCGGAAGTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTTGCCACTGCCCTCGAAGAAAAGGAGGAGCCTCAGTGCCCTCCTGGACTTCGAAAGTACGAGAGTATGGTGGTTTTGAGGCCTGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGGTAGTATCATCTCTGAAATGTTGCTACTGTGTTGTTGTCTTTCCCCTCTTCTGTAGTTCTCTCTGGTTTCTGACGAAAGACCAAAGGAAAACGGAAATTTGTTTAGACTAGTTTCATATCTGAGAGAATTCAGTTTGCTGCTCTGTTTAAATTGGGCTTAAGATCATATACTCCTTGCGGCCTTTCTGATAAGCCACATAAGAAGTAATGAGGTCGGAGATTGTCATTGCCTGAATCCGATCACATTATTCAAGTCATGGATAGCTCATGAAAACTTAGGGCGTAGTTAATGAAAACCAGTAGCTTTTATGGAAATGCAGTTGAAAATTTCTAATATATGAGTAGTTTGCTCTGTTTGAGTGTATGGTTCCCAAGAAGAGGGAACCTTTTGTTGTGTCAGCCTTCTAAGTCCCATGGAGACACTAGTGGTGAGAATTTCACGTTGAAGAGATAGAGCAACACATGAGCCACTCCTCTAGTTGCTAATTGATTTTTATATAAAACTCTATGTTTATCTAATATGGTATTGGGAGTTCAATCAAGTATTGGGGAAAAAAAGATCTGACCCAAGAATGGGTGGACCAAAAGATGGAGAGGTATGCATTACTTCTCTTGTTGCCAATTGGTTTTGAGATGTAACTTCATGTTCATCTAATATGTAGGGATGAATGGATTCTTTTATTTCTTTGATGAAAGAGTTTTTTCATTGAACTTTAGGGATATTTAACTATCAATAAACGTGAGTTTATGAACCCTAACAAAGGTTGGATTTTGTATAACCTATGTTTGTATTACGGAAAGGAATCGGTTTTTGTAAACTTGAGTTTGTGTAACTTGTAATTAGTTGGTGAGTTTAGACTATTTATTTATTTATTTCTTAAATACGATATTTAATATAAAATATAGATTCATGTAATATAACTTTACATCGTTCGTAAGAACAGCAAACTTATAGTCTGGAATAAACAAGTCAACATCCTAAACACCTAGTCTTTTGATCTCATGTTACACATTTAATCCATGAACCAACTTTTGGTGCTTGAAAAATATTGTAGTGTTAAGCAACACTTTGATGTAGAGGCGCACTAGCTGATTGCTTTGTTGTAAAGAGGCAAGTGGCAGCATTGAGAATTTTTATGAGAGAACATTCAAGAAAGGCAGGAAAGTTACTTGCATTTTTGGAGGAAAAGTTGCCTAAATGGGCAATTTATTTCCTACAGGAACTGTTTGCATTTTATATTCCTTACAAGCATGCACTCCTTATCATGAAAACATTGAATGCAATACCAAGATTTTTTCCCCCTTGTGCGTGTGTGCATTGTCACGATAAAAACACAGTAATATTTATCTCATTATTGTCAGAAATTCTCCCCGTCCTTGATTAAGTAAACTTCTGGTTGTGGAGTGAAGTTACGAACTGTGGATTTATATGATGTAAGCATCAACCGATGATCTTAGTTGATTGAATGATTTCTCTCTTGACTGAAGCATGTCTTTTTCTTTCATCTATTAAGACGTAATTTAGCTTAAATAAGCAAGTGATTCTTTGGTAAAGGGACAATCAAGTTAGTATTGTTTTTCTTTAAACATAGTGTTTGACAAGAATGGCCTATTTTGCAGTTGCTTGTTGCTGGGGGTGCAATGTATGTTGAAGTATTCAACAAAGGGCTCATTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACCAACACTTACTTGGATGGCATCAATCTCCTTTTCACCTACTTCACAAAACCCGAATCAATGGCAGTTCTCGAGGCAACACTTCAAGCAGACGACGATGTTGTTCGATCAATGAGTTTCAAGGTAAGGAAACGAAAATTCTAAGTATGCTTTACCCTTTAAATATCTTGGTGTTTCACATCATCATTTGGACAAATTTTATTCAAAGCAATGGAAAAAGATTTGTAGTTGCCAGTTTGTGCTTTTCCTTTTCAAAATGAGTGCTGCTATTGTGACAACTCTATGGGCCATTTAGGCTTTATCCATAACCATCTGATTGCTGTTCTTTCCATCACAGCCTTCCAATGGAAGTACTATTTCAAGTTGGAAAAAAAAAAGGAAAAAGAAAAAGGAAATATAGATTAGATGTTGATCTTTCATAGCTGGAAAATCCACTTAGTGACTTGAGAACAATTTTTTTTTTTAAAAAAAGAAATGATCCACCAATGACTGTCGTGTTCTATCGATCAAGCAACACCCTCCGCTGAAAGTGCTTTTGGATTCAAAAGAAATACAAAGAAAATTGTGAGCATGGAGTACTAGGTAGAAGTTTAGGGGTTGTCTCTAAATTTATTGTTTATTCTTTTGGTTCTTTTTAATTATTTTTTAGTTTTGATCCAATGAATGGTAAAAGTTAATCTTACTGTTAACTGTTGTGATTGTTAGTTACAAATTCGTGATTGTGAAAGGAATAAGCTCATTTATTTTGGAATAAAACATCTTTTGATCTGTTGATCTCTAAACTTCGATAGCATAGTTTTTGTATGGATTCTTATGTTTTAAAATGCTACATTTGTATTTTTGAGTTTTAGATTTTAAGGTCAAGTGGAGGGATTACTCAAAATTTTGTTGAGGTTTTTCGAACTATTTTTAATTTCATATTTAGATGGAAATGAAAAACATTTTTTAATGTCATATGGATAAAATTTTCAAAATGGAACTCGTGAGCTCGAATTAGGCTTCTTGCTCTAGGTCTCGCTCTCTCTTTCCTCTTTCATGCAAATCAGTCTTCTTGCTTGCCTTCACGCCCTTGTTCCGTAACACAGAACCATTCCTATCAAAAAATCAAAATACACAAATCCATGAAGAAAACTCGGATTTGA

mRNA sequence

ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACTTCTCCTCTCTCCTCCAAATCCCCTTTCCTTACCCCATTCACGAATCAAATTTCTTTCCCCTTTGCCCTCAAACTCTCCAAACCCCTCTTTTCTCCCTACGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTAAAAGCGCAAACTCTTGAATTTTCAGGTTCGTTCTTCGAAGGTGGGCTCGGAAGTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTTGCCACTGCCCTCGAAGAAAAGGAGGAGCCTCAGTGCCCTCCTGGACTTCGAAAGTACGAGAGTATGGTGGTTTTGAGGCCTGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGTTGCTTGTTGCTGGGGGTGCAATGTATGTTGAAGTATTCAACAAAGGGCTCATTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACCAACACTTACTTGGATGGCATCAATCTCCTTTTCACCTACTTCACAAAACCCGAATCAATGGCAGTTCTCGAGGCAACACTTCAAGCAGACGACGATGTTGTTCGATCAATGAGTTTCAAGAACCATTCCTATCAAAAAATCAAAATACACAAATCCATGAAGAAAACTCGGATTTGA

Coding sequence (CDS)

ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACTTCTCCTCTCTCCTCCAAATCCCCTTTCCTTACCCCATTCACGAATCAAATTTCTTTCCCCTTTGCCCTCAAACTCTCCAAACCCCTCTTTTCTCCCTACGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTAAAAGCGCAAACTCTTGAATTTTCAGGTTCGTTCTTCGAAGGTGGGCTCGGAAGTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTTGCCACTGCCCTCGAAGAAAAGGAGGAGCCTCAGTGCCCTCCTGGACTTCGAAAGTACGAGAGTATGGTGGTTTTGAGGCCTGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGTTGCTTGTTGCTGGGGGTGCAATGTATGTTGAAGTATTCAACAAAGGGCTCATTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACCAACACTTACTTGGATGGCATCAATCTCCTTTTCACCTACTTCACAAAACCCGAATCAATGGCAGTTCTCGAGGCAACACTTCAAGCAGACGACGATGTTGTTCGATCAATGAGTTTCAAGAACCATTCCTATCAAAAAATCAAAATACACAAATCCATGAAGAAAACTCGGATTTGA

Protein sequence

MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKAQTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKNHSYQKIKIHKSMKKTRI*

Homology

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BLAST of CsaV3_5G001930 vs. NCBI nr
Match: KAE8647835.1 (hypothetical protein Csa_000386 [Cucumis sativus])

HSP 1 Score: 431.8 bits (1109), Expect = 3.6e-117
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFKNHSYQKIKIHKSMKKTRI 223
           PESMAVLEATLQADDDVVRSMSFKNHSYQKIKIHKSMKKTRI
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFKNHSYQKIKIHKSMKKTRI 222

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BLAST of CsaV3_5G001930 vs. NCBI nr
Match: XP_031741227.1 (30S ribosomal protein S6 alpha, chloroplastic [Cucumis sativus])

HSP 1 Score: 396.7 bits (1018), Expect = 1.3e-106
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFK 205
           PESMAVLEATLQADDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

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BLAST of CsaV3_5G001930 vs. NCBI nr
Match: XP_016898885.1 (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Cucumis melo] >KAA0042673.1 30S ribosomal protein S6 alpha [Cucumis melo var. makuwa] >TYK06076.1 30S ribosomal protein S6 alpha [Cucumis melo var. makuwa])

HSP 1 Score: 379.8 bits (974), Expect = 1.6e-101
Identity = 196/204 (96.08%), Postives = 199/204 (97.55%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSKSP L PFTNQISFPF LKLSKPLFSP GIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFK 205
           PESMAVLEATLQADDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

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BLAST of CsaV3_5G001930 vs. NCBI nr
Match: XP_038906485.1 (30S ribosomal protein S6 alpha, chloroplastic [Benincasa hispida])

HSP 1 Score: 357.5 bits (916), Expect = 8.6e-95
Identity = 184/204 (90.20%), Postives = 193/204 (94.61%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSK   L PFT+Q+SFPF LK  K LFSP GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQVSFPFTLKPFKSLFSPDGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFFEGGLG++DEPPAPPGTGFA ALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVF+KGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFK 205
           PESM +LEATLQADD+VVRSMSFK
Sbjct: 181 PESMGILEATLQADDNVVRSMSFK 204

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BLAST of CsaV3_5G001930 vs. NCBI nr
Match: XP_023534494.1 (30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338.2 bits (866), Expect = 5.4e-89
Identity = 175/204 (85.78%), Postives = 185/204 (90.69%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSK   L  FT  ISFPF L+ SK LFSP GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPQFTPHISFPFTLRSSKSLFSPDGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFF+GG G++DEPPA PGTGFA  LE+KEEPQCPPGLRKYESMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLA T+KYEELLVAGG MYVEVF+KG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFK 205
           PESM VLEA LQADDDVVRSMSFK
Sbjct: 181 PESMGVLEAALQADDDVVRSMSFK 204

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BLAST of CsaV3_5G001930 vs. ExPASy Swiss-Prot
Match: Q8VY91 (30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS6 PE=2 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.7e-61
Identity = 125/193 (64.77%), Postives = 147/193 (76.17%), Query Frame = 0


Query: 12  STSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKAQTLEFSGSFFE 71
           S+ PL S S  L PF ++         SKP+ +   I    G    VK+Q L+FSG+FFE
Sbjct: 19  SSQPLLSFSHSLRPFISK---------SKPMCA--SIQKRDGSQFVVKSQALDFSGTFFE 78

Query: 72  GGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSEDERLAFTEKYEE 131
           GG GS D+P +P G+G +TALE+K EPQCPPGLR+YE+M VLRPDMSEDERL  T+KYEE
Sbjct: 79  GGFGSDDDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEE 138

Query: 132 LLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATL 191
           LLVAGG MYVEVFN+G+IPLAYSI+KKNKAGETNTYLDGI LLFTYFTKPES+  LE  L
Sbjct: 139 LLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIVPLETVL 198

Query: 192 QADDDVVRSMSFK 205
            ADDD++RS SFK
Sbjct: 199 TADDDIIRSSSFK 200

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BLAST of CsaV3_5G001930 vs. ExPASy Swiss-Prot
Match: P82403 (30S ribosomal protein S6 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS6 PE=1 SV=3)

HSP 1 Score: 224.2 bits (570), Expect = 1.5e-57
Identity = 130/205 (63.41%), Postives = 148/205 (72.20%), Query Frame = 0


Query: 2   AFTSTLTATSSTSPLSS-KSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 61
           + TSTL ++S T+ L S   P L P T  I+F   L    P   P         G  VKA
Sbjct: 5   SLTSTLPSSSPTTSLHSIPKPKLKPST--INFTHNLNPFNPNLKPSRHHYLSNYGPYVKA 64

Query: 62  QTLEFSGSFFEGGLGSQDE-PPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSE 121
             L+FSGSFFEGG G  DE PP+ P  G   A+EEK EPQCPPGLR+YE+M VLRPDM+E
Sbjct: 65  IALDFSGSFFEGGFGGLDEDPPSTPPAGL--AVEEKPEPQCPPGLRQYETMAVLRPDMTE 124

Query: 122 DERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFT 181
           DERL  T+KYEELLVAGGAMYVEVFN+G+IPLAYSIK+KNKAGETN YLDGI LLFTYFT
Sbjct: 125 DERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFT 184

Query: 182 KPESMAVLEATLQADDDVVRSMSFK 205
           KPES++ LEA L  DDDV+RS SFK
Sbjct: 185 KPESISPLEAALVTDDDVIRSSSFK 205

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BLAST of CsaV3_5G001930 vs. ExPASy Swiss-Prot
Match: Q3MBE2 (30S ribosomal protein S6 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpsF PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-08
Identity = 32/98 (32.65%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 107 YESMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNT 166
           YE++ +LRPD+++++      KY+ LL   GA  +EV N+G   LAY IKK+        
Sbjct: 5   YETLYILRPDLTDEQVELAIAKYQNLLQEQGATDIEVQNRGKRRLAYEIKKQR------- 64

Query: 167 YLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFK 205
             DG  + F Y    +++A+LE  ++  ++V+R ++ K
Sbjct: 65  --DGFYVQFNYNAPGKAIAILERAMRLSEEVIRYLTVK 93

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BLAST of CsaV3_5G001930 vs. ExPASy Swiss-Prot
Match: Q8YMX2 (30S ribosomal protein S6 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpsF PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.9e-08
Identity = 32/98 (32.65%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 107 YESMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNT 166
           YE++ +LRPD+++++      KY+ LL   GA  +EV N+G   LAY IKK+        
Sbjct: 5   YETLYILRPDLTDEQVELAIAKYQNLLQEQGATDLEVQNRGKRRLAYEIKKQR------- 64

Query: 167 YLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFK 205
             DG  + F Y    +++A+LE  ++  ++V+R ++ K
Sbjct: 65  --DGFYVQFNYNAPGKAIAILERAMRLSEEVIRYLTVK 93

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BLAST of CsaV3_5G001930 vs. ExPASy Swiss-Prot
Match: Q8EKV4 (30S ribosomal protein S6 OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831) OX=221109 GN=rpsF PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-07
Identity = 31/102 (30.39%), Postives = 53/102 (51.96%), Query Frame = 0


Query: 104 LRKYESMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGE 163
           +RKYE M ++RPD+ E+ + A  E++  +L   GA   +V  KG   LAY         E
Sbjct: 1   MRKYEIMYIIRPDIEEEAQTALIERFNTILTDNGAEIDKVDEKGKRRLAY---------E 60

Query: 164 TNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKN 206
            N Y DG  ++  +    E++   +   + +DD++R M+ K+
Sbjct: 61  INDYRDGYYVIINFRGSEEAINEFDRLAKFNDDIIRHMAIKD 93

[Close]

BLAST of CsaV3_5G001930 vs. ExPASy TrEMBL
Match: A0A0A0KK24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148810 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.2e-107
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFK 205
           PESMAVLEATLQADDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

[Close]

BLAST of CsaV3_5G001930 vs. ExPASy TrEMBL
Match: A0A5D3C6V7 (30S ribosomal protein S6 alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001770 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 7.9e-102
Identity = 196/204 (96.08%), Postives = 199/204 (97.55%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSKSP L PFTNQISFPF LKLSKPLFSP GIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFK 205
           PESMAVLEATLQADDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

[Close]

BLAST of CsaV3_5G001930 vs. ExPASy TrEMBL
Match: A0A1S4DT54 (30S ribosomal protein S6 alpha, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107990347 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 7.9e-102
Identity = 196/204 (96.08%), Postives = 199/204 (97.55%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSKSP L PFTNQISFPF LKLSKPLFSP GIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFK 205
           PESMAVLEATLQADDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

[Close]

BLAST of CsaV3_5G001930 vs. ExPASy TrEMBL
Match: A0A6J1K3V4 (30S ribosomal protein S6 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111491447 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.0e-88
Identity = 173/204 (84.80%), Postives = 184/204 (90.20%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60
           MAFTSTLTATSS SPLSSK   L  FT  ISFPF L+ SK LFSP GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSASPLSSKPHSLPQFTPHISFPFTLRSSKSLFSPDGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFF+GG G++DEPP  PGTGFA  LE+KEEPQCPPGLRKYESMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPTSPGTGFAIDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLA T+KYEELLVAGG MYVEVF+KG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFK 205
           PESM +LEATLQADDDVVRSMSFK
Sbjct: 181 PESMGILEATLQADDDVVRSMSFK 204

[Close]

BLAST of CsaV3_5G001930 vs. ExPASy TrEMBL
Match: A0A6J1H3R6 (30S ribosomal protein S6 alpha, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459837 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.7e-88
Identity = 174/204 (85.29%), Postives = 184/204 (90.20%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSK   L  FT  ISFPF L+ SK LFSP GI PALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPQFTPHISFPFTLRSSKSLFSPDGIDPALGLGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFF+GG G++DEPPA PGTGFA  LE+KEEPQCPPGLRKYESMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLA T+KYEELLVAGG MYVEVF+KG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFK 205
           PESM VLEA LQADDDVVRSMSFK
Sbjct: 181 PESMGVLEAALQADDDVVRSMSFK 204

[Close]

BLAST of CsaV3_5G001930 vs. TAIR 10
Match: AT1G64510.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 237.3 bits (604), Expect = 1.2e-62
Identity = 125/193 (64.77%), Postives = 147/193 (76.17%), Query Frame = 0


Query: 12  STSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKAQTLEFSGSFFE 71
           S+ PL S S  L PF ++         SKP+ +   I    G    VK+Q L+FSG+FFE
Sbjct: 19  SSQPLLSFSHSLRPFISK---------SKPMCA--SIQKRDGSQFVVKSQALDFSGTFFE 78

Query: 72  GGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSEDERLAFTEKYEE 131
           GG GS D+P +P G+G +TALE+K EPQCPPGLR+YE+M VLRPDMSEDERL  T+KYEE
Sbjct: 79  GGFGSDDDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEE 138

Query: 132 LLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATL 191
           LLVAGG MYVEVFN+G+IPLAYSI+KKNKAGETNTYLDGI LLFTYFTKPES+  LE  L
Sbjct: 139 LLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIVPLETVL 198

Query: 192 QADDDVVRSMSFK 205
            ADDD++RS SFK
Sbjct: 199 TADDDIIRSSSFK 200

The following BLAST results are available for this feature:

BLAST of CsaV3_5G001930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647835.1	3.6e-117	100.00	hypothetical protein Csa_000386 [Cucumis sativus]	[more]
XP_031741227.1	1.3e-106	100.00	30S ribosomal protein S6 alpha, chloroplastic [Cucumis sativus]	[more]
XP_016898885.1	1.6e-101	96.08	PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Cucumis melo] >KAA0042...	[more]
XP_038906485.1	8.6e-95	90.20	30S ribosomal protein S6 alpha, chloroplastic [Benincasa hispida]	[more]
XP_023534494.1	5.4e-89	85.78	30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_5G001930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY91	1.7e-61	64.77	30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
P82403	1.5e-57	63.41	30S ribosomal protein S6 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RP...	[more]
Q3MBE2	2.9e-08	32.65	30S ribosomal protein S6 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)...	[more]
Q8YMX2	4.9e-08	32.65	30S ribosomal protein S6 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)...	[more]
Q8EKV4	1.9e-07	30.39	30S ribosomal protein S6 OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107...	[more]

BLAST of CsaV3_5G001930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK24	6.2e-107	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148810 PE=3 SV=1	[more]
A0A5D3C6V7	7.9e-102	96.08	30S ribosomal protein S6 alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S4DT54	7.9e-102	96.08	30S ribosomal protein S6 alpha, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1079...	[more]
A0A6J1K3V4	1.0e-88	84.80	30S ribosomal protein S6 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1H3R6	1.7e-88	85.29	30S ribosomal protein S6 alpha, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CsaV3_5G001930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64510.1	1.2e-62	64.77	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014717	Translation elongation factor EF1B/ribosomal protein S6	GENE3D	3.30.70.60		coord: 104..221 e-value: 1.2E-16 score: 62.5
IPR000529	Ribosomal protein S6	PFAM	PF01250	Ribosomal_S6	coord: 106..204 e-value: 5.6E-16 score: 58.6
IPR000529	Ribosomal protein S6	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 16..204
None	No IPR available	PANTHER	PTHR21011:SF15	30S RIBOSOMAL PROTEIN S6 ALPHA, CHLOROPLASTIC	coord: 16..204
None	No IPR available	CDD	cd15487	bS6_chloro_cyano	coord: 104..205 e-value: 1.65827E-33 score: 114.227
IPR020814	Ribosomal protein S6, plastid/chloroplast	HAMAP	MF_00360	Ribosomal_S6	coord: 104..207 score: 13.573244
IPR035980	Ribosomal protein S6 superfamily	SUPERFAMILY	54995	Ribosomal protein S6	coord: 104..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G001930.1	CsaV3_5G001930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome