CsaV3_4G037420 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G037420
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 26218879 .. 26219087 (-)
RNA-Seq Expression	CsaV3_4G037420
Synteny	CsaV3_4G037420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCAGTGGAGAACAGACAATTCAACCATAGCAGTGAGAAGGAAGGCAGAGAAATGATGAGATGGTAGGTCTGTTGAGAAATTGGAGTCCTCGTTGAGAGGGATGAGGTGTGGTCTGTAGCGAGGGATCGAGCGAAGGTGGAGAAGTGGGAGAAGACAAGAAGCCGATTGCCAATATACCGAACAACAACAAAGGAAAGGAATAA

mRNA sequence

ATGATCCCAGTGGAGAACAGACAATTCAACCATAGCAGTGAGAAGGAAGGCAGAGAAATGATGAGATGCGAGGGATCGAGCGAAGGTGGAGAAGTGGGAGAAGACAAGAAGCCGATTGCCAATATACCGAACAACAACAAAGGAAAGGAATAA

Coding sequence (CDS)

ATGATCCCAGTGGAGAACAGACAATTCAACCATAGCAGTGAGAAGGAAGGCAGAGAAATGATGAGATGCGAGGGATCGAGCGAAGGTGGAGAAGTGGGAGAAGACAAGAAGCCGATTGCCAATATACCGAACAACAACAAAGGAAAGGAATAA

Protein sequence

MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE*

Homology

[Close]

BLAST of CsaV3_4G037420 vs. NCBI nr
Match: KGN55515.1 (hypothetical protein Csa_012795 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 8.8e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE 51
          MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE
Sbjct: 1  MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE 50

[Close]

BLAST of CsaV3_4G037420 vs. ExPASy TrEMBL
Match: A0A0A0L0S0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664230 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.2e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE 51
          MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE
Sbjct: 1  MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE 50

The following BLAST results are available for this feature:

BLAST of CsaV3_4G037420 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55515.1	8.8e-19	100.00	hypothetical protein Csa_012795 [Cucumis sativus]	[more]

BLAST of CsaV3_4G037420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G037420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0S0	4.2e-19	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664230 PE=4 SV=1	[more]

BLAST of CsaV3_4G037420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G037420.1	CsaV3_4G037420.1	mRNA