CsaV3_4G037080 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G037080
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Large proline-rich protein BAG6 isoform X2
Location	chr4: 26037877 .. 26040600 (-)
RNA-Seq Expression	CsaV3_4G037080
Synteny	CsaV3_4G037080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTTCCCTTTGCGATCGAGAGAGAGAGAGAGAGAGTTATTGAGCCTACTGGTGTGCCTTCGTGCTAGGGGTTTTCGTTGTTACAGTCCTCCCATGGCGCCTTCAGCTCCGTCAAGCTCAACACCTGAATTTCAAATGTCTAAAAAGCCACTTGGGTTATATGCTAACGCACTAAAACGCAAGGATAGTTTCATTCAGTTGTTGGCCATGACTGGTATTTTGCTTTTAAGCTTTCGATCTTTGGGTCAGAAGTACCGTATCAACGATCTTCAAGAAGACACTACGGCTCTCAAACAAGAACATGAAACCCTAGTTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCATGAGGCATCCCTCGAATCCACTGGCCACTTTGCATCCAGGCTTCGCCTTCTCTTCAGCGATGAAGATTGACTGCTTTAAGTCTTCAATCTGTGAGTTTCGTAGTGTATTTTCGTCATGCTTCTGCTCTGTACCCAATTGTTAACTCGATTTTTGAAATTTCCCTGCATTTTTGTTGTTGCAGTTTGTAACATTCCAGAATGCTTGGTGAAACTTTTTGTTTACTTGTTTTAATGCAATAAAGAGGTTAATTCAATCTTGGATGAGTTTTTGTTTTGTTCATTGTTTTTTGGTTATTCTGAATTGAATGGTTGAATTTGTTGTTTAAAGCGATACAAATCCCTAAACCCTATTGATTTAGGGTTTTATTGATTGTTCATCTTTCTAATAGACTCTGTTCCCACCGGGCTGCGCATTTATTGTGTATCATCATTCTTACCACTCGGTCATAGATAGAAATGGTAGAGTGAATGGGTGATTATACTTCAAGACTTCGAGCTCTGTAAAAATATGCTAAAAAAACATTGATTAAAAGTACTTTGGATGTTTTTGGAAACTTCCGAGTACCTGTAGGAAATTGTTCTTCCAGGCTGGTTCTTGATGTTTTAACGTCTTGTTTCTTCTTAAGACCCTTTCGACTAGAGATATCAAGAGATGGAAATTACTCTATACGGTTTTCAGGAAGAAATTTTTGTTTAGTTCGATATTGATTTAGATTGATTGATCATAGACAGCATCCCATTTTGTACCCATCTTTAACATTGTGGTTGGACGTCTAGCGGGCAGCATTAAGGTGGGTGTAACACAAGATGCACCTAAGTATTTTCTTGAAAGAATGACAGTTGAGAACAAGTTTGCTACTTGTCAGGAATAGGATGAAATTGTGAAACATCAGGTTTCTTTACCTTCAATTCAAGTATGTATCTGACTAATGTTAAAGCTCCTGGTTGTGTAATTTCTGGGAATTTTTTTGGCGCAAGGATACTACAAAGCTTATGTTGTGCTATTCTTGTGATGTAGGATATATTAATCTATTGTTTGGAGAGCTGCTGCTGATTGAAGAGCTAGACTTTGGGCTCATATCTTCAAAGACATTACTTATAAAACTGATTGTGCCCACCAACTAGCCCAAGGAAAACGCCAAGGGCACAGTTTCATATTCAAGTGATGGATAGTTTTTAGAAAATTTTATAGGGTAGAATAGATGTGCTGATTCTTCAAAAAGTTTCCATCAGTTAGAGAAAAGTTTGTTTTGTGCCCACGTGTTCTATGATGGCTGCACCATTATCCTTGCCTTAAAGAAAAAAAACTCGCAGGAAAAAATACTCACTCTAGGGTGCACCCTATACCCTATGGGACTTGAATGTGGACCACGATGTGCCAAGGTTGTATTACTTGTCTAACCCTATAACATTTGGGTGTCAAGAAAACTTAGTAATTACCTCTTAGCTCTTTATCAAAGTCATGATGGTTAAATTTTCGCTATTTGACGTAGTGCATTTGAGCTAATTCTCTCTAAAGATGTATTGCCTCTTTCTTCACATCACCCATGAGTCACGACCAAGTACAAGAACAATCACAATATAAGCTTTTTTCTGTTTGGACCCAGCTACTTAGGAGCATCATGTATGAACTGATTGGGTGTACCTTCAAACTTATGAGCATCATGTACCATCATCATGTACCACTGCATGCATCACTACACTCAATAAAGCTATTCAACGATCTATTGAGC

mRNA sequence

ATGGCGCCTTCAGCTCCGTCAAGCTCAACACCTGAATTTCAAATGTCTAAAAAGCCACTTGGGTTATATGCTAACGCACTAAAACGCAAGGATAGTTTCATTCAGTTGTTGGCCATGACTGGTATTTTGCTTTTAAGCTTTCGATCTTTGGGTCAGAAGTACCGTATCAACGATCTTCAAGAAGACACTACGGCTCTCAAACAAGAACATGAAACCCTAGTTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCATGAGGCATCCCTCGAATCCACTGGCCACTTTGCATCCAGGCTTCGCCTTCTCTTCAGCGATGAAGATTGA

Coding sequence (CDS)

ATGGCGCCTTCAGCTCCGTCAAGCTCAACACCTGAATTTCAAATGTCTAAAAAGCCACTTGGGTTATATGCTAACGCACTAAAACGCAAGGATAGTTTCATTCAGTTGTTGGCCATGACTGGTATTTTGCTTTTAAGCTTTCGATCTTTGGGTCAGAAGTACCGTATCAACGATCTTCAAGAAGACACTACGGCTCTCAAACAAGAACATGAAACCCTAGTTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCATGAGGCATCCCTCGAATCCACTGGCCACTTTGCATCCAGGCTTCGCCTTCTCTTCAGCGATGAAGATTGA

Protein sequence

MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQEDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED*

Homology

[Close]

BLAST of CsaV3_4G037080 vs. NCBI nr
Match: XP_011654256.1 (uncharacterized protein LOC105435327 [Cucumis sativus] >XP_011654257.1 uncharacterized protein LOC105435327 [Cucumis sativus] >KGN55481.1 hypothetical protein Csa_012428 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 9.2e-50
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

[Close]

BLAST of CsaV3_4G037080 vs. NCBI nr
Match: XP_008452927.1 (PREDICTED: uncharacterized protein LOC103493794 [Cucumis melo] >XP_008452928.1 PREDICTED: uncharacterized protein LOC103493794 [Cucumis melo] >KAA0064625.1 uncharacterized protein E6C27_scaffold255G003480 [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 2.6e-44
Identity = 100/108 (92.59%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSSTPEFQMSKKPLG YAN LK KD  IQLLAMTGILLLS RSLGQKYRIN+LQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDTTALKQEHETLVDRMKNIKRSLLHEASLESTG FASRLRLLFSDED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 108

[Close]

BLAST of CsaV3_4G037080 vs. NCBI nr
Match: TYK19967.1 (large proline-rich protein BAG6 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 2.6e-44
Identity = 100/108 (92.59%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSSTPEFQMSKKPLG YAN LK KD  IQLLAMTGILLLS RSLGQKYRIN+LQ
Sbjct: 155 MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 214

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDTTALKQEHETLVDRMKNIKRSLLHEASLESTG FASRLRLLFSDED
Sbjct: 215 EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 262

[Close]

BLAST of CsaV3_4G037080 vs. NCBI nr
Match: XP_022142735.1 (uncharacterized protein LOC111012778 [Momordica charantia] >XP_022142744.1 uncharacterized protein LOC111012778 [Momordica charantia])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 94/108 (87.04%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSS PEFQ+ KKPLGL+ANALKRKDSFIQ  AMTGI+LLS RSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDT+ALKQEHETL+DRMKNIKRSLLHEASL+ TG FASRLRLLFSDED
Sbjct: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRLRLLFSDED 108

[Close]

BLAST of CsaV3_4G037080 vs. NCBI nr
Match: XP_038897763.1 (uncharacterized protein LOC120085692 [Benincasa hispida])

HSP 1 Score: 182.6 bits (462), Expect = 1.9e-42
Identity = 96/108 (88.89%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSS PEFQ  KKPL L+ANALKRKDSFIQ  AMTGILLLSFRSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSAPEFQTPKKPLSLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDTTALKQE ETL+DRMKNIKRSLLHEASLESTG FASRLRLLFS+ED
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLESTGLFASRLRLLFSEED 108

[Close]

BLAST of CsaV3_4G037080 vs. ExPASy TrEMBL
Match: A0A0A0L5S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653420 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.5e-50
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

[Close]

BLAST of CsaV3_4G037080 vs. ExPASy TrEMBL
Match: A0A1S3BW63 (uncharacterized protein LOC103493794 OS=Cucumis melo OX=3656 GN=LOC103493794 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 100/108 (92.59%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSSTPEFQMSKKPLG YAN LK KD  IQLLAMTGILLLS RSLGQKYRIN+LQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDTTALKQEHETLVDRMKNIKRSLLHEASLESTG FASRLRLLFSDED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 108

[Close]

BLAST of CsaV3_4G037080 vs. ExPASy TrEMBL
Match: A0A5A7VFG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003480 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 100/108 (92.59%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSSTPEFQMSKKPLG YAN LK KD  IQLLAMTGILLLS RSLGQKYRIN+LQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDTTALKQEHETLVDRMKNIKRSLLHEASLESTG FASRLRLLFSDED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 108

[Close]

BLAST of CsaV3_4G037080 vs. ExPASy TrEMBL
Match: A0A5D3D8R1 (Large proline-rich protein BAG6 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00810 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 100/108 (92.59%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSSTPEFQMSKKPLG YAN LK KD  IQLLAMTGILLLS RSLGQKYRIN+LQ
Sbjct: 155 MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 214

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDTTALKQEHETLVDRMKNIKRSLLHEASLESTG FASRLRLLFSDED
Sbjct: 215 EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 262

[Close]

BLAST of CsaV3_4G037080 vs. ExPASy TrEMBL
Match: A0A6J1CMC7 (uncharacterized protein LOC111012778 OS=Momordica charantia OX=3673 GN=LOC111012778 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.3e-43
Identity = 94/108 (87.04%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60
           MAPSAPSSS PEFQ+ KKPLGL+ANALKRKDSFIQ  AMTGI+LLS RSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 109
           EDT+ALKQEHETL+DRMKNIKRSLLHEASL+ TG FASRLRLLFSDED
Sbjct: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRLRLLFSDED 108

[Close]

BLAST of CsaV3_4G037080 vs. TAIR 10
Match: AT1G20430.1 (unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.5 bits (275), Expect = 8.4e-25
Identity = 61/114 (53.51%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 1   MAPSAPSSST-------PEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQK 60
           MA SAP  S        P   ++    G + N  K K SF Q  AMTGILLLSFRS+ QK
Sbjct: 1   MASSAPQGSVDPLTGKDPAKALTAVASGFFENVKKNKQSFFQFAAMTGILLLSFRSVSQK 60

Query: 61  YRINDLQEDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDE 108
           YRI+DL+EDT  LK+E ++L DRM  IK  LLH+AS++S+G FASRLRLLF ++
Sbjct: 61  YRIHDLEEDTAVLKKEQDSLTDRMSKIKSDLLHQASIDSSGVFASRLRLLFGED 114

The following BLAST results are available for this feature:

BLAST of CsaV3_4G037080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654256.1	9.2e-50	100.00	uncharacterized protein LOC105435327 [Cucumis sativus] >XP_011654257.1 uncharact...	[more]
XP_008452927.1	2.6e-44	92.59	PREDICTED: uncharacterized protein LOC103493794 [Cucumis melo] >XP_008452928.1 P...	[more]
TYK19967.1	2.6e-44	92.59	large proline-rich protein BAG6 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_022142735.1	1.1e-42	87.04	uncharacterized protein LOC111012778 [Momordica charantia] >XP_022142744.1 uncha...	[more]
XP_038897763.1	1.9e-42	88.89	uncharacterized protein LOC120085692 [Benincasa hispida]	[more]

BLAST of CsaV3_4G037080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G037080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5S3	4.5e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653420 PE=4 SV=1	[more]
A0A1S3BW63	1.3e-44	92.59	uncharacterized protein LOC103493794 OS=Cucumis melo OX=3656 GN=LOC103493794 PE=...	[more]
A0A5A7VFG7	1.3e-44	92.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D8R1	1.3e-44	92.59	Large proline-rich protein BAG6 isoform X2 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1CMC7	5.3e-43	87.04	uncharacterized protein LOC111012778 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of CsaV3_4G037080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20430.1	8.4e-25	53.51	unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..76
None	No IPR available	PANTHER	PTHR36316:SF1	OS06G0213900 PROTEIN	coord: 1..107
None	No IPR available	PANTHER	PTHR36316	OS06G0213900 PROTEIN	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G037080.1	CsaV3_4G037080.1	mRNA