CsaV3_4G036990 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G036990
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein
Location	chr4: 25978911 .. 25980534 (+)
RNA-Seq Expression	CsaV3_4G036990
Synteny	CsaV3_4G036990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAACCTATAAATATAATTTACCCGGAAGAATGTTTTATTTTTGTTGTTGTTTAGTCTAAAACTCGAAGACAACCCCTCCATTTCCTTCTCCATCCCTCTTGAGTCCACCACTCCTTCCTCTTCCTCCAAACACCCACGTCGCTGGCGGTCACGCCTGCTGTTGCAGATCCGGCGGCATGAACCGAGTCCGGCCGAGACGGTGGTGACCCAAACGGAAGTCACCTACCGGGAAATCTGCAGCGAATTGTCAGATTCGCAACCTCCGGTAACAGACTGGTCATTTTTCCCATTTAAGGTGAGGTTTAATATTTTAGTCTTCGACTGATTTGTATAAGAATTTTTCGAAAATTTCTGTTTGGGATTTCAAATATTTTGTTTAAATAACCTTTGGAAGTAGAACACGTTTTGTTTGGGTCTCAATAAAATAAGATTGTTGGAAGCAATACTGTGTAGCAATGAAGGAAGAAGGAGATGGATCGATGAAATCCATTATTAAAGATGAAGAGAATGCGGTAGGTTACCACAGCAACAATGTAAAAAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTTGACGATCCTATTCTCGCTGATGTCCCCAAAAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGAAGCGCCATGCGTATCTCCGTCCTTAAGCTCGATGGCACTGCCATTGGTACACACATTTTTCTAATGATCCTTCTTTTTCCCTGTCTGGCATTTTCACAAACACCTTGTTTTATGAACAACTGAAACTCAATTCACCATCTTGTTCTTGGTTTAGATGTGGTGATCATGAATTCCGCGACATTGAAAGACTTGAAGCTTGCAATCAAGAAGAAAGTAAACGAGATGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGTACTCTTTCTTGAAAGCACTCTAAGCCAATCATTCAATGATCACTGTCCATCGATTCAATTCCTTCGCTTTTGAATTTGCAGGAAACACGTATGGGCAAATTTTTGCTTAGCACACCTCAACGAGAAGCTTCTTGATGATAGCTCTGTTCTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTTGGATTTTTAGAAGAGTTGGAAATATTTGAAATTTATCTGAGTTGAATCATTCAATCATTATATACAATGAACAAAAACTTGTTGCAGGTACGTTTTATCCCATACGTTATGTCAAAGAGCTCCAGAACTCATTCTCGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGAGCTTCCAGATGCCTTGGAGGATGTTTCTCTTCAACACAAATTCAGTAAGCTTGAGTTCGCATTACAATTTTTGAACCTGAATATGAACTTTAGAGTGAATGAGTTTATAGGAACTTGACACTTCCTTGTACATTTAACATTATGATATGTAAAAATGCAAACTAATGTCTACATGATTAGCAAATTCTTTGTTGTTTATAGACTGGGAAACCAAAATCCTCCATATGCTTTGCCTTTTACTACTGTTCTCTTGTTTGATTTTCCTTCCCTTTAGCCACGTTTGTAATGTTTCAACTTTTATGACTAAAATTATAAAAACAAAATACATTGAACTTTGG

mRNA sequence

ATGAAGGAAGAAGGAGATGGATCGATGAAATCCATTATTAAAGATGAAGAGAATGCGGTAGGTTACCACAGCAACAATGTAAAAAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTTGACGATCCTATTCTCGCTGATGTCCCCAAAAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGAAGCGCCATGCGTATCTCCGTCCTTAAGCTCGATGGCACTGCCATTGATGTGGTGATCATGAATTCCGCGACATTGAAAGACTTGAAGCTTGCAATCAAGAAGAAAGTAAACGAGATGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGAAACACGTATGGGCAAATTTTTGCTTAGCACACCTCAACGAGAAGCTTCTTGATGATAGCTCTGTTCTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTACGTTTTATCCCATACGTTATGTCAAAGAGCTCCAGAACTCATTCTCGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGA

Coding sequence (CDS)

ATGAAGGAAGAAGGAGATGGATCGATGAAATCCATTATTAAAGATGAAGAGAATGCGGTAGGTTACCACAGCAACAATGTAAAAAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTTGACGATCCTATTCTCGCTGATGTCCCCAAAAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGAAGCGCCATGCGTATCTCCGTCCTTAAGCTCGATGGCACTGCCATTGATGTGGTGATCATGAATTCCGCGACATTGAAAGACTTGAAGCTTGCAATCAAGAAGAAAGTAAACGAGATGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGAAACACGTATGGGCAAATTTTTGCTTAGCACACCTCAACGAGAAGCTTCTTGATGATAGCTCTGTTCTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTACGTTTTATCCCATACGTTATGTCAAAGAGCTCCAGAACTCATTCTCGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGA

Protein sequence

MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKCA*

Homology

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BLAST of CsaV3_4G036990 vs. NCBI nr
Match: XP_004145525.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >XP_011654244.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >XP_031740761.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN55472.1 hypothetical protein Csa_012465 [Cucumis sativus])

HSP 1 Score: 356.3 bits (913), Expect = 1.6e-94
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180
           WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

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BLAST of CsaV3_4G036990 vs. NCBI nr
Match: XP_008452908.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis melo] >ADN34128.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0064617.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis melo var. makuwa] >TYK19975.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 339.7 bits (870), Expect = 1.5e-89
Identity = 171/181 (94.48%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE GDGSMKS+ KDEEN VGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDV+IMNSATLKDLKLAIK+KVNE EQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180
           WANFCLAH NEK+LDDSSVLQDFGIRNNSQVRFIPYVMSK+SRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

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BLAST of CsaV3_4G036990 vs. NCBI nr
Match: XP_038898960.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Benincasa hispida] >XP_038898961.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Benincasa hispida])

HSP 1 Score: 321.6 bits (823), Expect = 4.3e-84
Identity = 164/181 (90.61%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE+GD S     KDEEN VGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKEDGDESK----KDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDV IMNSATLKDLKLAIKKKVN+MEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNDMEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180
           WANFCLAH NEK+LDD+SVLQDFGIRNNSQV F+PYVMSK+SR HSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDNSVLQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNKC 177

Query: 181 A 182
           A
Sbjct: 181 A 177

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BLAST of CsaV3_4G036990 vs. NCBI nr
Match: XP_022975482.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 [Cucurbita maxima] >XP_022975488.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 [Cucurbita maxima] >XP_023535849.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535850.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535851.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535852.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535853.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535854.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.5 bits (802), Expect = 1.2e-81
Identity = 158/180 (87.78%), Postives = 165/180 (91.67%), Query Frame = 0


Query: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE+GD S+KS  K+EEN VGYHS NVKKVRLNSTL ALLDDPILADVPK PTL  VDTL
Sbjct: 1   MKEDGDESLKSSSKEEENVVGYHSTNVKKVRLNSTLTALLDDPILADVPKKPTLLDVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGT IDV IMNSA+LKDLKLAIKKKVNEMEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTIIDVAIMNSASLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180
           WANFCLAH NEK+LDDSS LQDFGIRNNSQV F+PYVMSK+SR HSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDSSALQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNKC 180

[Close]

BLAST of CsaV3_4G036990 vs. NCBI nr
Match: KAG6591246.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313.5 bits (802), Expect = 1.2e-81
Identity = 158/180 (87.78%), Postives = 165/180 (91.67%), Query Frame = 0


Query: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE+GD S+KS  K+EEN VGYHS NVKKVRLNSTL ALLDDPILADVPK PTL  VDTL
Sbjct: 13  MKEDGDESLKSSSKEEENVVGYHSTNVKKVRLNSTLTALLDDPILADVPKKPTLLDVDTL 72

Query: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGT IDV IMNSA+LKDLKLAIKKKVNEMEQSKMGHRHISWKHV
Sbjct: 73  ISLELGSAMRISVLKLDGTIIDVAIMNSASLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 132

Query: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180
           WANFCLAH NEK+LDDSS LQDFGIRNNSQV F+PYVMSK+SR HSRRRKHRFFHGLNKC
Sbjct: 133 WANFCLAHHNEKILDDSSALQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNKC 192

[Close]

BLAST of CsaV3_4G036990 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 7.9e-57
Identity = 110/159 (69.18%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 21  GYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTA 80
           G +    K+ +L S L+ LL DPILADVP+NPTLS V TL+SLE GSAMR+SV+KLDG++
Sbjct: 4   GDYDVETKREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKLDGSS 63

Query: 81  IDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHLNEKLLDDSSVL 140
           +DV +MNSATLKDLKL IKKKVNEMEQ+ MGHRHISWKHVW+NFCL+  NEKLLDD++VL
Sbjct: 64  LDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVL 123

Query: 141 QDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNK 180
           QD GIRNNSQV F+PYVM K    HS+R+KHR F  L+K
Sbjct: 124 QDVGIRNNSQVTFMPYVMKKGRGRHSKRKKHRLFRSLHK 162

[Close]

BLAST of CsaV3_4G036990 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-21
Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = 0


Query: 36  LAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLK 95
           LA ++ DP+L D+P   TL  V++ I+LE G AM + V K+DG  + VV++ SAT+ DLK
Sbjct: 8   LAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATVLDLK 67

Query: 96  LAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIP 155
            AI++ V   ++ + G +HISW +VW  + L    EKL +D   L+D+GIRN  +V FI 
Sbjct: 68  KAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIK 127

Query: 156 YVMSK 161
            +  K
Sbjct: 128 KLRQK 132

[Close]

BLAST of CsaV3_4G036990 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-20
Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 39  LLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAI 98
           ++ DP+L D+P   TL  V++ I+LE G AM + V K+DG  + VV++ +AT+ DLK AI
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 99  KKKVNEMEQSKMGHRHISWKHVWANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVM 158
           ++ V   ++ + G +HISW +VW  + L    EKL +D   L+D+GIRN  +V FI  + 
Sbjct: 62  QRYVQLRQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLR 121

Query: 159 SK 161
            K
Sbjct: 122 QK 123

[Close]

BLAST of CsaV3_4G036990 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-20
Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 39  LLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAI 98
           ++ DP+L D+P   TL  V++ I+LE G AM + V K+DG  + VV++ +AT+ DLK AI
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 99  KKKVNEMEQSKMGHRHISWKHVWANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVM 158
           ++ V   ++ + G +HISW +VW  + L    EKL +D   L+D+GIRN  +V FI  + 
Sbjct: 62  QRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLR 121

Query: 159 SK 161
            K
Sbjct: 122 QK 123

[Close]

BLAST of CsaV3_4G036990 vs. ExPASy TrEMBL
Match: A0A0A0L4F3 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G652840 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 7.6e-95
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180
           WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of CsaV3_4G036990 vs. ExPASy TrEMBL
Match: A0A5A7VCB2 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00890 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 7.4e-90
Identity = 171/181 (94.48%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE GDGSMKS+ KDEEN VGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDV+IMNSATLKDLKLAIK+KVNE EQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180
           WANFCLAH NEK+LDDSSVLQDFGIRNNSQVRFIPYVMSK+SRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of CsaV3_4G036990 vs. ExPASy TrEMBL
Match: E5GCC9 (Ubiquitin_4 domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 7.4e-90
Identity = 171/181 (94.48%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE GDGSMKS+ KDEEN VGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDV+IMNSATLKDLKLAIK+KVNE EQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180
           WANFCLAH NEK+LDDSSVLQDFGIRNNSQVRFIPYVMSK+SRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of CsaV3_4G036990 vs. ExPASy TrEMBL
Match: A0A1S3BW55 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Cucumis melo OX=3656 GN=LOC103493787 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 7.4e-90
Identity = 171/181 (94.48%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE GDGSMKS+ KDEEN VGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDV+IMNSATLKDLKLAIK+KVNE EQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180
           WANFCLAH NEK+LDDSSVLQDFGIRNNSQVRFIPYVMSK+SRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of CsaV3_4G036990 vs. ExPASy TrEMBL
Match: A0A6J1IJC5 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111474833 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.7e-82
Identity = 158/180 (87.78%), Postives = 165/180 (91.67%), Query Frame = 0


Query: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE+GD S+KS  K+EEN VGYHS NVKKVRLNSTL ALLDDPILADVPK PTL  VDTL
Sbjct: 1   MKEDGDESLKSSSKEEENVVGYHSTNVKKVRLNSTLTALLDDPILADVPKKPTLLDVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGT IDV IMNSA+LKDLKLAIKKKVNEMEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTIIDVAIMNSASLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180
           WANFCLAH NEK+LDDSS LQDFGIRNNSQV F+PYVMSK+SR HSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDSSALQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNKC 180

[Close]

BLAST of CsaV3_4G036990 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 221.5 bits (563), Expect = 5.6e-58
Identity = 110/159 (69.18%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 21  GYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTA 80
           G +    K+ +L S L+ LL DPILADVP+NPTLS V TL+SLE GSAMR+SV+KLDG++
Sbjct: 4   GDYDVETKREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKLDGSS 63

Query: 81  IDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAHLNEKLLDDSSVL 140
           +DV +MNSATLKDLKL IKKKVNEMEQ+ MGHRHISWKHVW+NFCL+  NEKLLDD++VL
Sbjct: 64  LDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVL 123

Query: 141 QDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNK 180
           QD GIRNNSQV F+PYVM K    HS+R+KHR F  L+K
Sbjct: 124 QDVGIRNNSQVTFMPYVMKKGRGRHSKRKKHRLFRSLHK 162

[Close]

BLAST of CsaV3_4G036990 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 5.9e-15
Identity = 41/106 (38.68%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 69  MRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAH 128
           +R+SVLKLDG++ DV ++ SAT+ DLK+AI+   + +   K G   ISW HVW +FCL  
Sbjct: 19  IRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHV--PKKGPSKISWSHVWGHFCLCF 78

Query: 129 LNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKS--SRTHSRRRKHR 173
             +KL+ D+  + ++G+++  +VRF  +V   +  S+ +SR+ K +
Sbjct: 79  GGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSKGYSRKSKQK 122

[Close]

BLAST of CsaV3_4G036990 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-13
Identity = 32/89 (35.96%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 69  MRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAH 128
           ++++VLKLDG++  + ++ +AT+ +LK+A++   + +  S  G   ISW HVW  FCL++
Sbjct: 38  IKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPIS--GPGKISWPHVWGQFCLSY 97

Query: 129 LNEKLLDDSSVLQDFGIRNNSQVRFIPYV 158
            +++L+++S  L +FGI++  Q+RFI ++
Sbjct: 98  EDKRLINESEYLTEFGIKDGDQLRFIRHI 124

[Close]

BLAST of CsaV3_4G036990 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 6.1e-12
Identity = 32/89 (35.96%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 69  MRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAH 128
           ++++VLKLDG++    ++ +AT+ +LK+A++   + +  S  G   ISW HVW  FCL++
Sbjct: 6   IKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPIS--GPGKISWPHVWGQFCLSY 65

Query: 129 LNEKLLDDSSVLQDFGIRNNSQVRFIPYV 158
            +++L+++S  L +FGI++  Q+RFI ++
Sbjct: 66  EDKRLINESEYLTEFGIKDGDQLRFIRHI 89

[Close]

BLAST of CsaV3_4G036990 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-10
Identity = 41/154 (26.62%), Postives = 84/154 (54.55%), Query Frame = 0


Query: 27  VKKVRLNSTLAALLDDPILADVPKNPTLS---HVDTLISLELGSAMRISVLKLDGTAIDV 86
           V+  R +  L +L+D   L+    N   S      + + L     +++SV+KL+G+  DV
Sbjct: 8   VRDGRRSGGLRSLIDPRFLSSFALNDGGSISGRRSSYLKLPPQGRIKLSVVKLNGSLFDV 67

Query: 87  VIMNSATLKDLKLAIKK--KVNEMEQSKMGHRHISWKHVWANFCLAHLNEKLLDDSSVLQ 146
            +    ++ +LK A+++   ++ +E    GH  ISW HVW +FCL + +++L++D + ++
Sbjct: 68  EVAKDCSVAELKRAVEQVFTISPLE----GHGMISWSHVWGHFCLCYRDQRLVNDKTSIR 127

Query: 147 DFGIRNNSQVRFIPYV------MSKSSRTHSRRR 170
             G+ +  Q+ F+ ++      M+K S++ S +R
Sbjct: 128 YLGLNDGDQLHFVRHLSIDHSPMNKRSKSPSCKR 157

The following BLAST results are available for this feature:

BLAST of CsaV3_4G036990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145525.1	1.6e-94	100.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >XP_011...	[more]
XP_008452908.1	1.5e-89	94.48	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis melo]...	[more]
XP_038898960.1	4.3e-84	90.61	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Benincasa hispida] >XP_0...	[more]
XP_022975482.1	1.2e-81	87.78	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 [Cucurbita max...	[more]
KAG6591246.1	1.2e-81	87.78	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyr...	[more]

BLAST of CsaV3_4G036990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	7.9e-57	69.18	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q9BV90	1.4e-21	42.40	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
Q3ZBQ4	2.0e-20	40.98	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]
Q8VIK1	2.0e-20	40.98	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]

BLAST of CsaV3_4G036990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4F3	7.6e-95	100.00	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G652840...	[more]
A0A5A7VCB2	7.4e-90	94.48	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Cucumis melo var. maku...	[more]
E5GCC9	7.4e-90	94.48	Ubiquitin_4 domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4...	[more]
A0A1S3BW55	7.4e-90	94.48	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Cucumis melo OX=3656 G...	[more]
A0A6J1IJC5	5.7e-82	87.78	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 OS=Cucurbita m...	[more]

BLAST of CsaV3_4G036990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07860.1	5.6e-58	69.18	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	5.9e-15	38.68	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	1.9e-13	35.96	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	6.1e-12	35.96	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	2.0e-10	26.62	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 63..166 e-value: 1.8E-36 score: 126.1
None	No IPR available	PANTHER	PTHR14942:SF0	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 14..179
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 69..156 e-value: 2.0E-29 score: 101.5
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 68..154 e-value: 6.0405E-38 score: 123.782
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 14..179
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 64..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G036990.1	CsaV3_4G036990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex