CsaV3_4G036930 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G036930
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 25950309 .. 25950539 (+)
RNA-Seq Expression	CsaV3_4G036930
Synteny	CsaV3_4G036930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGAACAAAAGAAACGAAAATCAAAGAAGCACGTCTGTATACATGTATCTGGCTTCCTCTTAACTGCTCCGGACCTGAAAATTCAGATTCTGAAGACGAAAATAGGGAGAGAAATCAACAGAATCGAATGGAATGGAATGGAAATGAAATCGTTGAGGCGAGAATTCCAGGAACCGAAGAAGGAGATGAGGAAGCCAGATGGAAATGGAGAAGAAAAGGGCGCGTAG

mRNA sequence

ATGAACGAACAAAAGAAACGAAAATCAAAGAAGCACGTCTGTATACATGTATCTGGCTTCCTCTTAACTGCTCCGGACCTGAAAATTCAGATTCTGAAGACGAAAATAGGGAGAGAAATCAACAGAATCGAATGGAATGGAATGGAAATGAAATCGTTGAGGCGAGAATTCCAGGAACCGAAGAAGGAGATGAGGAAGCCAGATGGAAATGGAGAAGAAAAGGGCGCGTAG

Coding sequence (CDS)

ATGAACGAACAAAAGAAACGAAAATCAAAGAAGCACGTCTGTATACATGTATCTGGCTTCCTCTTAACTGCTCCGGACCTGAAAATTCAGATTCTGAAGACGAAAATAGGGAGAGAAATCAACAGAATCGAATGGAATGGAATGGAAATGAAATCGTTGAGGCGAGAATTCCAGGAACCGAAGAAGGAGATGAGGAAGCCAGATGGAAATGGAGAAGAAAAGGGCGCGTAG

Protein sequence

MNEQKKRKSKKHVCIHVSGFLLTAPDLKIQILKTKIGREINRIEWNGMEMKSLRREFQEPKKEMRKPDGNGEEKGA*

Homology

[Close]

BLAST of CsaV3_4G036930 vs. NCBI nr
Match: KGN55466.1 (hypothetical protein Csa_012839 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 3.8e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MNEQKKRKSKKHVCIHVSGFLLTAPDLKIQILKTKIGREINRIEWNGMEMKSLRREFQEP 60
          MNEQKKRKSKKHVCIHVSGFLLTAPDLKIQILKTKIGREINRIEWNGMEMKSLRREFQEP
Sbjct: 1  MNEQKKRKSKKHVCIHVSGFLLTAPDLKIQILKTKIGREINRIEWNGMEMKSLRREFQEP 60

Query: 61 KKEMRKPDGNGEEKGA 77
          KKEMRKPDGNGEEKGA
Sbjct: 61 KKEMRKPDGNGEEKGA 76

[Close]

BLAST of CsaV3_4G036930 vs. ExPASy TrEMBL
Match: A0A0A0L5Q3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652780 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MNEQKKRKSKKHVCIHVSGFLLTAPDLKIQILKTKIGREINRIEWNGMEMKSLRREFQEP 60
          MNEQKKRKSKKHVCIHVSGFLLTAPDLKIQILKTKIGREINRIEWNGMEMKSLRREFQEP
Sbjct: 1  MNEQKKRKSKKHVCIHVSGFLLTAPDLKIQILKTKIGREINRIEWNGMEMKSLRREFQEP 60

Query: 61 KKEMRKPDGNGEEKGA 77
          KKEMRKPDGNGEEKGA
Sbjct: 61 KKEMRKPDGNGEEKGA 76

The following BLAST results are available for this feature:

BLAST of CsaV3_4G036930 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55466.1	3.8e-34	100.00	hypothetical protein Csa_012839 [Cucumis sativus]	[more]

BLAST of CsaV3_4G036930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G036930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5Q3	1.9e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652780 PE=4 SV=1	[more]

BLAST of CsaV3_4G036930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G036930.1	CsaV3_4G036930.1	mRNA