CsaV3_4G036580 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G036580
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Eukaryotic translation initiation factor 5A
Location	chr4: 25702900 .. 25705901 (-)
RNA-Seq Expression	CsaV3_4G036580
Synteny	CsaV3_4G036580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGTGGAGATCGTTTTGGCACCGAAATGTGGGAAAAAAAAGAATATCAACATAGTTTAGGGGCTCGCATCAGAAACCCTAATTGATACGATACGTGGCCGGTTGAAACGTGATGCTATAAATTGGTCTCGTCCTCTTGACTCGTACTCTCCTCCTTCCTCCCGTTTTCCTTCCGCTTCCACCGAAATCCCACTGTGAACACAGAAGAAGAAGCCCACCGGAGGCTGTAGAAGAACGAAATCAATCTTTAGTCATGTCGGACGAGGAGCATCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAGACTTACCCACAACAGGCCGGAGCTATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGATTTGTTTGTGTTTATTGCGATGATTTGATTTTTTTTTCTCATCGGTTGTGTTTGTTTTATTGTGTGGTTTGATTTATGTTGTTTAGGGTTGAGTTTTGGATCGAGCGATTTAGATCTTTGATTGATATTCGAGGGTTTTCTTTTTCTGGATTAATGATTCTTATACTGTAAGTTTTTTATTTCTTATGATTTTTGAGTCTTGGATTTGGGGAAATTGATGGATCTGATGTTGAAATTGACATTGACGATTATTCGGATCAATGTTTGTTTGGAGTTTGGGGATTTTGTAATTATGACTTCGAAAGATCTCTTGATGGCTGAGTTTCGTTTGGTCAACGATAAACAGTGTGTTATATTATCCTCTAATCCTTCCTATGAGGATGCTGGTGTTTATAGTTGTTTACAGTGTAGTTTTAGTTTAATATTGATTTTATCTGGAGAAGATGATTTCCATAGTGTCGTGTTTTTTCCTTTTTGGGTATTTCTTTGTCACCAGCCACACGGGGGTGAGTTTATGTTTGTTTGAGACTGTTATTGCTACTTGACATTAATTATTGAAAAAGTATAACGAGGGTCCAAAAGGACAAATTGATTAATACTACTAAATTATAACTTTAGGCATTGAAGTGGATAAGCACTTGATCTTCCTTAATTTGAAAGTGTACTCTCTAGAAGGCATTTCTGCATACCTAATCCCACTAATTTATGTTACTTTTCTTTGGGTTGTATGGTAATGCAGGTGGTTGAGGTTTCAACTTCTAAGACAGGAAAGCACGGCCATGCTAAGTGTCACTTTGTTGGAATTGACATCTTCACTGCCAAGAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGGGAGTCTATTATAAAGCCTTCAAACTATTCATCTGTAACGATTTACCATTTTCACTAACGGTCTTTGTTTCATGGTTTGTAGGTGCCCCATGTTAATCGTACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTGTGAGTACTTTGTTTTTATGGAGTTTGTTTGACTTGTTGGGTCTTGCTGTTTTCAAGAAACTTATTCATAAGGATATAATGTTATATCTGTTTTATTAGATTTCTAGATTTATTTGGAAGTTTTCATGCTTCAGATTGTTTTGGTAATCAATTTTATCTGTGAAACCCTGTTAGATAGATTGTTTGTCCAGAATGTAATTTGGAAATAAAGGAGCAAATATTTGTGTGGAGAGATTGTTATACAATCATAGATGGAGAAGGAAGCAATGAATCATTTATATGTGTTGAAGTGTGTAAAGCCTCGTTCCATTATTTGAATGATGTTTTTCTTTGGGTGCAGGTGAGTCTTTTAACTGACAGTGGTGATACCAAGGATGATTTGAGACTTCCAACTGATGATAATCTGCTCAAACAGGTAAAGGCACACATGTACACTTGAAAAGAACAATCCGTGCACTCGAGATAGTTTTGTATATTTGAAAAAGAGCTTTGATGAAGTTAATCGTGCAAGCATCATTATTTTTTCCTTTTTGTAAGAGGGAACCTCATTCCTTCTGTTTCCATTTCATGCTTAATATTCCATTCTCAAGATATTGTGAAGATATGGTCATATGGGTTTATTCCTCAATATCATGTTCTTGTGATGATGATTTACCAATATAAAAACAAAAGCTGAACATGTCCTTTGTATTCACAGATTAAGGAAGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTCAAGGATATTGGCCCGAAGTAGGTCTTGTTGCACACAAAGTTAAAAGTTGTGGTCATCGACTGCTTTTTATTGCCGAATTCCTCTATTGAATCTTTTAAATGATGGTATAATTAATTAGCAGACTCTGTATCTGTTAACGCCTCATTCTTCTCGTCCCTCCATTCCCTTTCTCCCTTCTTTTCTCATCTCATCTCATCTCACCTTCTGGCCCAGGATGTATGGTTTGTTCGTGCATCATTACTGTGCTTTATGTTGTGTTATTTTATGATATTGGGTGTAATGTTATTGGGTTTTTGGATGCTTACTTTGATAATCGAAGTGAATAATTTTTGCGAAATCATCAGTTGTCTCCTGAAATTCGTTCTCTTAGTGCTTTAGAGTTGGAACTGTATTCAATTTTCTTTTGTGTTAGTGGTGGGATTTGGAAATTACATATAACTTTCTACACTTGGTTGTTTTGACTGTTTGAAAACAAAAATCTTCTAATTTTGCATTTTCTCAATTATGAGTTCAATAATTGTTGAATTTTCTTCTTCCGATGCTTGGATTTTAATCTTTCTTAAGCCCAAGTGACAATAGATTACCTTTTTTTGTTTTTGTTTTTCCCTTGGGAGTTTTGGTGATGAGTCACATTCGTCATGATATGTTTTACCAAGTGATTCTAAGGTTTATCACGTTCTAAAAATAGTAGTGGACCAGGAACTACTTCACATGGGTTGTCTTTTTGTTGTGATTGGATTGAAGAAAAATGTTGTTTCTCTAAATAATATATTGTTTGCTATAAATTTCGTCCCATTTTTAAGAGCAAAAAACATTGACTTTTGGGTGTTTTCCAAGCA

mRNA sequence

ATGTCGGACGAGGAGCATCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAGACTTACCCACAACAGGCCGGAGCTATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGAAAGCACGGCCATGCTAAGTGTCACTTTGTTGGAATTGACATCTTCACTGCCAAGAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTGCCCCATGTTAATCGTACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAGTGGTGATACCAAGGATGATTTGAGACTTCCAACTGATGATAATCTGCTCAAACAGATTAAGGAAGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTCAAGGATATTGGCCCGAAGTAG

Coding sequence (CDS)

ATGTCGGACGAGGAGCATCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAGACTTACCCACAACAGGCCGGAGCTATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGAAAGCACGGCCATGCTAAGTGTCACTTTGTTGGAATTGACATCTTCACTGCCAAGAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTGCCCCATGTTAATCGTACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAGTGGTGATACCAAGGATGATTTGAGACTTCCAACTGATGATAATCTGCTCAAACAGATTAAGGAAGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTCAAGGATATTGGCCCGAAGTAG

Protein sequence

MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTDDNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK*

Homology

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BLAST of CsaV3_4G036580 vs. NCBI nr
Match: XP_004145502.1 (eukaryotic translation initiation factor 5A [Cucumis sativus] >KGN55431.1 hypothetical protein Csa_012217 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 2.0e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

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BLAST of CsaV3_4G036580 vs. NCBI nr
Match: XP_038899640.1 (eukaryotic translation initiation factor 5A-like [Benincasa hispida])

HSP 1 Score: 324.3 bits (830), Expect = 5.8e-85
Identity = 158/159 (99.37%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

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BLAST of CsaV3_4G036580 vs. NCBI nr
Match: XP_012470790.1 (PREDICTED: eukaryotic translation initiation factor 5A-like [Gossypium raimondii] >XP_012488943.1 PREDICTED: eukaryotic translation initiation factor 5A-like [Gossypium raimondii] >XP_016695674.2 eukaryotic translation initiation factor 5A [Gossypium hirsutum] >XP_016740071.1 eukaryotic translation initiation factor 5A-like [Gossypium hirsutum] >KAB2002021.1 hypothetical protein ES319_D11G037300v1 [Gossypium barbadense] >TYG43703.1 hypothetical protein ES288_D11G039400v1 [Gossypium darwinii] >TYH42071.1 hypothetical protein ES332_D11G038700v1 [Gossypium tomentosum] >TYI53887.1 hypothetical protein E1A91_D11G038100v1 [Gossypium mustelinum] >KAB2037984.1 hypothetical protein ES319_D03G113600v1 [Gossypium barbadense])

HSP 1 Score: 321.6 bits (823), Expect = 3.8e-84
Identity = 156/159 (98.11%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           +NLLKQIK+GFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 121 ENLLKQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

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BLAST of CsaV3_4G036580 vs. NCBI nr
Match: XP_008452854.1 (PREDICTED: eukaryotic translation initiation factor 5A-like [Cucumis melo] >KAA0064584.1 eukaryotic translation initiation factor 5A-like [Cucumis melo var. makuwa] >TYK20006.1 eukaryotic translation initiation factor 5A-like [Cucumis melo var. makuwa])

HSP 1 Score: 321.6 bits (823), Expect = 3.8e-84
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           VGIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLLKQIKEGFAEGKDLVVSVMS+MGEEQICALKDIGPK
Sbjct: 121 DNLLKQIKEGFAEGKDLVVSVMSSMGEEQICALKDIGPK 159

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BLAST of CsaV3_4G036580 vs. NCBI nr
Match: XP_012438813.1 (PREDICTED: eukaryotic translation initiation factor 5A [Gossypium raimondii] >XP_040963053.1 eukaryotic translation initiation factor 5A [Gossypium hirsutum] >KAB2000022.1 hypothetical protein ES319_D12G203100v1 [Gossypium barbadense] >TYG41913.1 hypothetical protein ES288_D12G214400v1 [Gossypium darwinii] >TYH39978.1 hypothetical protein ES332_D12G214800v1 [Gossypium tomentosum] >KAG4116656.1 hypothetical protein ERO13_D12G182600v2 [Gossypium hirsutum] >KJB53260.1 hypothetical protein B456_008G195800 [Gossypium raimondii])

HSP 1 Score: 321.6 bits (823), Expect = 3.8e-84
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           VGIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLLKQIK+GFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLKQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

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BLAST of CsaV3_4G036580 vs. ExPASy Swiss-Prot
Match: Q9AXJ4 (Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2)

HSP 1 Score: 306.2 bits (783), Expect = 2.1e-82
Identity = 146/159 (91.82%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAG IRKNGYIVIKNRPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           VGIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT++G+TKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           +NLL QIK+GFAEGKDLVVSVMSAMGEE+IC+LKDIGPK
Sbjct: 121 ENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159

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BLAST of CsaV3_4G036580 vs. ExPASy Swiss-Prot
Match: P24922 (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 4.8e-82
Identity = 148/159 (93.08%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTYPQQAG IRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT++G+TKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLL QIK+GFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of CsaV3_4G036580 vs. ExPASy Swiss-Prot
Match: P69039 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-81
Identity = 145/159 (91.19%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT++G+TKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLL  IK+GFAEGKDLV+SVMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

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BLAST of CsaV3_4G036580 vs. ExPASy Swiss-Prot
Match: P69040 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-81
Identity = 145/159 (91.19%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT++G+TKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLL  IK+GFAEGKDLV+SVMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

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BLAST of CsaV3_4G036580 vs. ExPASy Swiss-Prot
Match: P56337 (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 3.1e-81
Identity = 144/159 (90.57%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRK+G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT++G+TKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           D LL Q+K+GFAEGKDLV+SVMSAMGEEQIC +KDIGPK
Sbjct: 121 DTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

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BLAST of CsaV3_4G036580 vs. ExPASy TrEMBL
Match: A0A0A0L5K9 (Eukaryotic translation initiation factor 5A OS=Cucumis sativus OX=3659 GN=Csa_4G651970 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 9.7e-86
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of CsaV3_4G036580 vs. ExPASy TrEMBL
Match: A0A5D2AH83 (Eukaryotic translation initiation factor 5A OS=Gossypium darwinii OX=34276 GN=ES288_D03G123200v1 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.8e-84
Identity = 156/159 (98.11%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           +NLLKQIK+GFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 121 ENLLKQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of CsaV3_4G036580 vs. ExPASy TrEMBL
Match: A0A2P5R0D7 (Eukaryotic translation initiation factor 5A OS=Gossypium barbadense OX=3634 GN=ES319_D03G113600v1 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.8e-84
Identity = 156/159 (98.11%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           +NLLKQIK+GFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 121 ENLLKQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of CsaV3_4G036580 vs. ExPASy TrEMBL
Match: A0A5D2SLQ2 (Eukaryotic translation initiation factor 5A OS=Gossypium mustelinum OX=34275 GN=E1A91_D03G108300v1 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.8e-84
Identity = 156/159 (98.11%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           +NLLKQIK+GFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 121 ENLLKQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of CsaV3_4G036580 vs. ExPASy TrEMBL
Match: A0A0D2S6G9 (Eukaryotic translation initiation factor 5A OS=Gossypium raimondii OX=29730 GN=B456_003G098700 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.8e-84
Identity = 156/159 (98.11%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           +NLLKQIK+GFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 121 ENLLKQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of CsaV3_4G036580 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 291.6 bits (745), Expect = 3.9e-79
Identity = 143/159 (89.94%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFES +DAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           V IDIFT+KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG+VSLLTD+G TKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           D LL+QIK GF +GKDLVVSVMSAMGEEQI ALKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]

BLAST of CsaV3_4G036580 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 282.7 bits (722), Expect = 1.8e-76
Identity = 136/159 (85.53%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFES +DAGASKTYPQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           V IDIFT+KKLEDIVPSSHNCDVPHVNR DYQLIDISEDGFVSLLTD+G TKDDL+LPTD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           + LL Q+K GF EGKD+VVSVMSAMGEEQ+CALK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]

BLAST of CsaV3_4G036580 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 271.2 bits (692), Expect = 5.4e-73
Identity = 130/157 (82.80%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKTYPQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           V IDIFTAKKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLTDSG TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIG 158
           D L  Q++ GF EGKD+VVSVMS+MGEEQICA+K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

[Close]

BLAST of CsaV3_4G036580 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 225.3 bits (573), Expect = 3.4e-59
Identity = 108/127 (85.04%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKTYPQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTD 120
           V IDIFTAKKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLTDSG TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLKQI 128
           D L  Q+
Sbjct: 121 DGLTAQL 126

The following BLAST results are available for this feature:

BLAST of CsaV3_4G036580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145502.1	2.0e-85	100.00	eukaryotic translation initiation factor 5A [Cucumis sativus] >KGN55431.1 hypoth...	[more]
XP_038899640.1	5.8e-85	99.37	eukaryotic translation initiation factor 5A-like [Benincasa hispida]	[more]
XP_012470790.1	3.8e-84	98.11	PREDICTED: eukaryotic translation initiation factor 5A-like [Gossypium raimondii...	[more]
XP_008452854.1	3.8e-84	98.11	PREDICTED: eukaryotic translation initiation factor 5A-like [Cucumis melo] >KAA0...	[more]
XP_012438813.1	3.8e-84	98.11	PREDICTED: eukaryotic translation initiation factor 5A [Gossypium raimondii] >XP...	[more]

BLAST of CsaV3_4G036580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AXJ4	2.1e-82	91.82	Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV...	[more]
P24922	4.8e-82	93.08	Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=40...	[more]
P69039	1.1e-81	91.19	Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=40...	[more]
P69040	1.1e-81	91.19	Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EI...	[more]
P56337	3.1e-81	90.57	Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EI...	[more]

BLAST of CsaV3_4G036580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5K9	9.7e-86	100.00	Eukaryotic translation initiation factor 5A OS=Cucumis sativus OX=3659 GN=Csa_4G...	[more]
A0A5D2AH83	1.8e-84	98.11	Eukaryotic translation initiation factor 5A OS=Gossypium darwinii OX=34276 GN=ES...	[more]
A0A2P5R0D7	1.8e-84	98.11	Eukaryotic translation initiation factor 5A OS=Gossypium barbadense OX=3634 GN=E...	[more]
A0A5D2SLQ2	1.8e-84	98.11	Eukaryotic translation initiation factor 5A OS=Gossypium mustelinum OX=34275 GN=...	[more]
A0A0D2S6G9	1.8e-84	98.11	Eukaryotic translation initiation factor 5A OS=Gossypium raimondii OX=29730 GN=B...	[more]

BLAST of CsaV3_4G036580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13950.1	3.9e-79	89.94	eukaryotic elongation factor 5A-1	[more]
AT1G69410.1	1.8e-76	85.53	eukaryotic elongation factor 5A-3	[more]
AT1G26630.1	5.4e-73	82.80	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]
AT1G26630.2	3.4e-59	85.04	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020189	Translation elongation factor, IF5A C-terminal	SMART	SM01376	eIF_5a_2	coord: 85..154 e-value: 2.2E-35 score: 133.6
IPR020189	Translation elongation factor, IF5A C-terminal	PFAM	PF01287	eIF-5a	coord: 85..154 e-value: 2.9E-30 score: 104.2
None	No IPR available	GENE3D	2.40.50.140		coord: 86..158 e-value: 6.6E-35 score: 121.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR11673:SF42	BNAA07G09420D PROTEIN	coord: 1..156
None	No IPR available	CDD	cd04468	S1_eIF5A	coord: 86..156 e-value: 5.53146E-33 score: 109.934
IPR001884	Translation elongation factor IF5A-like	PIRSF	PIRSF003025	Transl_init_eIF5A	coord: 1..157 e-value: 1.4E-67 score: 224.1
IPR001884	Translation elongation factor IF5A-like	TIGRFAM	TIGR00037	TIGR00037	coord: 17..153 e-value: 1.4E-41 score: 139.3
IPR001884	Translation elongation factor IF5A-like	PANTHER	PTHR11673	TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER	coord: 1..156
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..85 e-value: 1.9E-43 score: 148.2
IPR019769	Translation elongation factor, IF5A, hypusine site	PROSITE	PS00302	IF5A_HYPUSINE	coord: 50..57
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 86..156
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 15..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G036580.1	CsaV3_4G036580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045901	positive regulation of translational elongation
biological_process	GO:0045905	positive regulation of translational termination
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003746	translation elongation factor activity