CsaV3_4G035470 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G035470
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionCRG16
Locationchr4: 25012311 .. 25012508 (+)
RNA-Seq ExpressionCsaV3_4G035470
SyntenyCsaV3_4G035470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGTCTCTAAGGTTTCTTTCATGGCTCTTGTTGCCGTTTTGTTCGCCGTCCTCTCCGTTGCTGTTGCACAATCTGCAGAGTCTCCTGCTCCCCCTCCGGCTTCTCCGGCTAACTCTGTCGTTCCTTCCTTGAGCTTTGCTTGTGTTGGTGCTTTCCTTGCTCTTCTCTTTGGATCTGCACTCAAGGCTTGA

mRNA sequence

ATGGCCGCCGTCTCTAAGGTTTCTTTCATGGCTCTTGTTGCCGTTTTGTTCGCCGTCCTCTCCGTTGCTGTTGCACAATCTGCAGAGTCTCCTGCTCCCCCTCCGGCTTCTCCGGCTAACTCTGTCGTTCCTTCCTTGAGCTTTGCTTGTGTTGGTGCTTTCCTTGCTCTTCTCTTTGGATCTGCACTCAAGGCTTGA

Coding sequence (CDS)

ATGGCCGCCGTCTCTAAGGTTTCTTTCATGGCTCTTGTTGCCGTTTTGTTCGCCGTCCTCTCCGTTGCTGTTGCACAATCTGCAGAGTCTCCTGCTCCCCCTCCGGCTTCTCCGGCTAACTCTGTCGTTCCTTCCTTGAGCTTTGCTTGTGTTGGTGCTTTCCTTGCTCTTCTCTTTGGATCTGCACTCAAGGCTTGA

Protein sequence

MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFGSALKA*
Homology
[Close]
BLAST of CsaV3_4G035470 vs. NCBI nr
Match: KGN55315.1 (hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sativus] >BAA11428.1 CRG16 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 7.1e-21
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60
          MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 SALKA 66
          SALKA
Sbjct: 61 SALKA 65

[Close]
BLAST of CsaV3_4G035470 vs. NCBI nr
Match: KAG7024335.1 (hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 0 

Query: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60
          MAAVSK SFMALVAVLF V+SVAVAQSAESPAP PASPA SVVPSLS ACVGAF+AL+FG
Sbjct: 24 MAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFG 83

Query: 61 SALKA 66
          SALKA
Sbjct: 84 SALKA 88

[Close]
BLAST of CsaV3_4G035470 vs. NCBI nr
Match: KAG6591454.1 (hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 0 

Query: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60
          MAAVSK SFMALVAVLF V+SVAVAQSAESPAP PASPA SVVPSLS ACVGAF+AL+FG
Sbjct: 28 MAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFG 87

Query: 61 SALKA 66
          SALKA
Sbjct: 88 SALKA 92

[Close]
BLAST of CsaV3_4G035470 vs. NCBI nr
Match: KGN62403.1 (hypothetical protein Csa_018595 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-06
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60
           MAA+SKVS +AL+A++FA+ SVA   + E+PAP PASPA S+ PS   AC+ AFLAL FG
Sbjct: 67  MAALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 126

Query: 61  SALK 65
           S L+
Sbjct: 127 STLR 127

[Close]
BLAST of CsaV3_4G035470 vs. NCBI nr
Match: KAG6598305.1 (hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 6.5e-06
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60
           MA VS+ S +AL+A++FAV SVA   + E+PAP PASPA S+ PS   ACV AF+AL FG
Sbjct: 68  MAGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFG 127

Query: 61  SALK 65
           S L+
Sbjct: 128 STLR 128

[Close]
BLAST of CsaV3_4G035470 vs. ExPASy TrEMBL
Match: Q96504 (CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.4e-21
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60
          MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 SALKA 66
          SALKA
Sbjct: 61 SALKA 65

[Close]
BLAST of CsaV3_4G035470 vs. ExPASy TrEMBL
Match: A0A0A0LKU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60
           MAA+SKVS +AL+A++FA+ SVA   + E+PAP PASPA S+ PS   AC+ AFLAL FG
Sbjct: 67  MAALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 126

Query: 61  SALK 65
           S L+
Sbjct: 127 STLR 127

The following BLAST results are available for this feature:
BLAST of CsaV3_4G035470 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55315.17.1e-21100.00hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sat... [more]
KAG7024335.11.8e-1687.69hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591454.11.8e-1687.69hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN62403.12.9e-0659.38hypothetical protein Csa_018595 [Cucumis sativus][more]
KAG6598305.16.5e-0657.81hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CsaV3_4G035470 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G035470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Q965043.4e-21100.00CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1[more]
A0A0A0LKU11.4e-0659.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1[more]
BLAST of CsaV3_4G035470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G035470.1CsaV3_4G035470.1mRNA