CsaV3_4G034460 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G034460
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	protein ROOT INITIATION DEFECTIVE 3
Location	chr4: 24398659 .. 24402304 (-)
RNA-Seq Expression	CsaV3_4G034460
Synteny	CsaV3_4G034460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGGTTCGTTCGGCAATTCCCCTCACCCTATTCAACTCCTTCCCGCCGCCGTCTCCTTCGGGGCTAAATTTCGTTGTGGTTGCCGCGCTGTTTTTCATCCATCGCACCGCCATAAAAATATTCAAACCAAATTGAAAACTGAAACCCTCCTCTCAAGCTCTCAACTCACAATGGTGCTACTCGTTGCTTCCTCGTCTATTGATTCAGGGATTGGTTGCTGGGACCTCCATACCGGCTCAGAACAACTGCGTTACAAGTCTTGTGCTTCTCCACCACATGGTCTTGTTTGTGTAGGTAGAAAGTTTCTCGCATGCTCTCAGCTTCGCGATCCTGCAGCCACTGCTGGCTCCGTTCTCTACTGGTCTTGGTCTAAGGTACTCGTTATTGTAACGAATTTCAGCCCTCTGTTCCTCAATACCCTGCTTGATTAATTTTTCTTTCTACAGCCTCAAGTTGAAGTTAAGAGTTTTCCGGCTGAACCAATAATGGCCTTGGCTTCCAACCATGAGGGTACTTATATTGTTGGTGGTGGTTTCTCTGGAGATATATACTTGTGGGAGGTAAATTTTGATTTTATAATTTATGCTCTGCCATTGAACTCTAAAATTGTCGTCTTCTTGTTCTATTAATTGACACATATTCTTGGCTGTAGTATAAGATGAATTGCTCGTTGTTGTAGGTTTTGAGTGGTAGACTGCTTAAAAAATGGCATGCTCATTATAGAGCAGTTACTTGCCTTGTATTCTCTGAAGATGACTCCCTGTTAGTTTCTGGTTCTGAAGATGGCTGCATTAGAGTTTGGTCTCTTATAACGTATAAATTTCATCATTTGGCATTATGTTTGTGTGTGTAGGTTTTTATATGAATTGTAAAAATTCTTATTACAAACACGTTGATTCCAGGGTTTTTGATGATGGTTGGCAAAGGGAAGCAAAACATTTGTATGAGCATAGTTTCACTGGGCATAATCTGCCTGTTACTGACATTGTTGTTGGCTATGGAGGATTCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTTTGGCACTCTATTGAATTTAACACTTCTACGTTGATAATGTAATTTTGTGATGATGTGGCCATGTAGTTTGGTTAGTTAATTAGTTTTACAACCACTTTGGAAGTCCAATTGCATTGACTTGGTAAATCGCCCTTTTTTGCAATTACAACACCTTGACGTTTAAGGTTTGCTTACATCCTCATCTAGGATTTTAGAAACATGTAAAAACATATTATCTAGACTAAGTTTGGGCTGTAACCAAAAATGACAATGTATGGAATGGGAGGATAGAGTGCACAGAGGTGGATATAATTATCCAATTACGATTTATATCAGTATGCATTCTGGTCTAGGATTTTCACATTTTTAATAGTGATGTGGGTATACTGTATATGAAACATGTTTGTTTATGATTTATCAACAATGAGTAATGACTACTTTCCTATCCTAACTTCACTCGTATCAAATTTTCTTTGGTGAGTCATATGTTGTATGCTAACTTGACTTTTGTAGGTGTGGAGCTTATCGAAGGGGAAGTTGTTAAGAAATATCATATTTCCTTCAATCATTGATGCCATTGCTTTGGATCCTGGTGAACATGTCTTTTATGGTGGTGGTAGAGATGGGAAGATCTACACTGCTGCGCTTAATGCTAAATGCCCATCCAGCAGTGACTACGGATTGCATATACTCGGGTCAATATCAAATCAAAGGTCTGTATTTATCTCTTTGATTTTCTTTCATCGTGGACCCATTCTTCTTTCAACTTTCATTAATATATCATCAGTTAAACATTAAAGATTAAGTTTTCAATTTCCTCTAATTTTGTTTCTCCTTTCCGGTTTCAAGAATCATCTTTTCTTTGTTTCATGCAATATATATTAGATTGTCTAATGATATAATTATGCAATGAAATGTTGAGGAATTTCAAGTTGCTTTTAGTTTGGTGCACTTGCACTAGGATTATTTGTAATGGTGTCTTGATTTCTTAAAAACTAGGAATTAGTATTCTACTTCCAAGTCAGTCGTTGTTGTGTCTCGGTTGCTAAACAGCTACTCTCTTTATGGTTTCTTTAAAGAAACTGGACGTGTTTTTTTATATGTAATATAGGTTTTTAATGCAAGATATATTATCTTCTTGGATTTGCTATATTGTCCAATTTATTGTCCTTTTGTATTCTTACTAGCAAGTCAGTTACTTCCTTGGCATACTGCTCAAGTGGTAATTTGTTGATCTCTGGATCTGAGGATGGAGCAATACGAGTTTGGGATACAAGAACCAATAACGTTATTCGTGTTTTCAGACATTCCAAAGGTAATAAGCCATTTAAATATTATTACTTCAATAAGTTCAGTTTCTGTGAAATTGTATTTTGTTTTCATTTACTGACTGTGTGACATTGTAAATAAATATTATTTTTTGCATAAGTACCTATACCAAGTTGTTTTTCATTTTCAAATTTAACCTTAGCTGAGGCTTAAGGTACTTCTTTCATTATTTTGTTTCCTCTGCTTTGTAATTCTAATTGTTAGAGATTGGAGGATGTTATATTCAAATTTTTTAAAAAATTATGTTTTGAAGCTTTATACTCTTTTTTATCTCTTTCTTAAGAACTTTATTTGAGCATTTTAAGTGAAATCATTTATATATAATTTTTTTAGATGTACATTCATTTATTTAATTTTCTGCATATAAGTTAACCTAGCAAGTGCAATTTATCTTTTGCTTAATTCATGACCAGCATTTTTATTATATGATATTAATGAAAATACATAATGCTCCGTACGCAGGTCCTGTAAATAATATACTTCTTGTTCAACAACAGCCCCTCCCTAAATCACAGTCAACTTCCCAAGGTTCTTTGAGAAAGCACCGACCACTCTTACCTCCTGCCCTTGCGAAATTTGAAAACTCTAAGGACGAGGATGAATACACTGGTGTTATCATTGATCCATCAGGTCCTCCCAAGGAATCTACGGGGTTTTCTTTCCTTAGTTCTCACGTTATGGATGATCAAATCACAGAACTTCAGGTGCTTTCTTTTTTTTCTATCCCCCTTCCCTGTGGTCCTAAAATTCCTTTCTTTTTTTCCTGGCTTAATTAGTTTGTATCTTATGCTGTTCTGGGATAGACACACAATATTTTGATATCCCATAATCCTCTATACAATTAAAACATGTTCTAACATGCGGTTTTCTGTATTTCAGCAACAGGGTTCTGCTGCCACCGGAATGGAGTTGGAAAGACTTAAGCATGATTATGGAAAATCCAAGCAAATGTTACAACACTGGAGAAAAATGTACGACAATTTACATCAATTTTGTGTTAATGAGCTTCTGGATGGCAATCAAACTAAAAATATAGAAGGCAATTCCACTTGAGCGTCGCTTTCACTTCTCTTATGTGTTCTATTTGTTTTATCTATCTCCAGTCCTAGAAATTGTATAATTGTGTTGAAACAAATTCGATGGAATTGTTAGGAAGTATAAGTCATCGTTGATTAATTTAAATTCCAAAATCCCATTTTTGGGATAAGAGATCTGTACATGGTGAATACAATTCCTTGATTTATAAGATTATTTTCGTTATGGGGGAATTCCTTATTCTTCTTG

mRNA sequence

ATGGTGCTACTCGTTGCTTCCTCGTCTATTGATTCAGGGATTGGTTGCTGGGACCTCCATACCGGCTCAGAACAACTGCGTTACAAGTCTTGTGCTTCTCCACCACATGGTCTTGTTTGTGTAGGTAGAAAGTTTCTCGCATGCTCTCAGCTTCGCGATCCTGCAGCCACTGCTGGCTCCGTTCTCTACTGGTCTTGGTCTAAGCCTCAAGTTGAAGTTAAGAGTTTTCCGGCTGAACCAATAATGGCCTTGGCTTCCAACCATGAGGGTACTTATATTGTTGGTGGTGGTTTCTCTGGAGATATATACTTGTGGGAGGTTTTGAGTGGTAGACTGCTTAAAAAATGGCATGCTCATTATAGAGCAGTTACTTGCCTTGTATTCTCTGAAGATGACTCCCTGTTAGTTTCTGGTTCTGAAGATGGCTGCATTAGAGTTTGGTCTCTTATAACGGTTTTTGATGATGGTTGGCAAAGGGAAGCAAAACATTTGTATGAGCATAGTTTCACTGGGCATAATCTGCCTGTTACTGACATTGTTGTTGGCTATGGAGGATTCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCGAAGGGGAAGTTGTTAAGAAATATCATATTTCCTTCAATCATTGATGCCATTGCTTTGGATCCTGGTGAACATGTCTTTTATGGTGGTGGTAGAGATGGGAAGATCTACACTGCTGCGCTTAATGCTAAATGCCCATCCAGCAGTGACTACGGATTGCATATACTCGGGTCAATATCAAATCAAAGCAAGTCAGTTACTTCCTTGGCATACTGCTCAAGTGGTAATTTGTTGATCTCTGGATCTGAGGATGGAGCAATACGAGTTTGGGATACAAGAACCAATAACGTTATTCGTGTTTTCAGACATTCCAAAGGTCCTGTAAATAATATACTTCTTGTTCAACAACAGCCCCTCCCTAAATCACAGTCAACTTCCCAAGGTTCTTTGAGAAAGCACCGACCACTCTTACCTCCTGCCCTTGCGAAATTTGAAAACTCTAAGGACGAGGATGAATACACTGGTGTTATCATTGATCCATCAGGTCCTCCCAAGGAATCTACGGGGTTTTCTTTCCTTAGTTCTCACGTTATGGATGATCAAATCACAGAACTTCAGCAACAGGGTTCTGCTGCCACCGGAATGGAGTTGGAAAGACTTAAGCATGATTATGGAAAATCCAAGCAAATGTTACAACACTGGAGAAAAATGTACGACAATTTACATCAATTTTGTGTTAATGAGCTTCTGGATGGCAATCAAACTAAAAATATAGAAGGCAATTCCACTTGA

Coding sequence (CDS)

ATGGTGCTACTCGTTGCTTCCTCGTCTATTGATTCAGGGATTGGTTGCTGGGACCTCCATACCGGCTCAGAACAACTGCGTTACAAGTCTTGTGCTTCTCCACCACATGGTCTTGTTTGTGTAGGTAGAAAGTTTCTCGCATGCTCTCAGCTTCGCGATCCTGCAGCCACTGCTGGCTCCGTTCTCTACTGGTCTTGGTCTAAGCCTCAAGTTGAAGTTAAGAGTTTTCCGGCTGAACCAATAATGGCCTTGGCTTCCAACCATGAGGGTACTTATATTGTTGGTGGTGGTTTCTCTGGAGATATATACTTGTGGGAGGTTTTGAGTGGTAGACTGCTTAAAAAATGGCATGCTCATTATAGAGCAGTTACTTGCCTTGTATTCTCTGAAGATGACTCCCTGTTAGTTTCTGGTTCTGAAGATGGCTGCATTAGAGTTTGGTCTCTTATAACGGTTTTTGATGATGGTTGGCAAAGGGAAGCAAAACATTTGTATGAGCATAGTTTCACTGGGCATAATCTGCCTGTTACTGACATTGTTGTTGGCTATGGAGGATTCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCGAAGGGGAAGTTGTTAAGAAATATCATATTTCCTTCAATCATTGATGCCATTGCTTTGGATCCTGGTGAACATGTCTTTTATGGTGGTGGTAGAGATGGGAAGATCTACACTGCTGCGCTTAATGCTAAATGCCCATCCAGCAGTGACTACGGATTGCATATACTCGGGTCAATATCAAATCAAAGCAAGTCAGTTACTTCCTTGGCATACTGCTCAAGTGGTAATTTGTTGATCTCTGGATCTGAGGATGGAGCAATACGAGTTTGGGATACAAGAACCAATAACGTTATTCGTGTTTTCAGACATTCCAAAGGTCCTGTAAATAATATACTTCTTGTTCAACAACAGCCCCTCCCTAAATCACAGTCAACTTCCCAAGGTTCTTTGAGAAAGCACCGACCACTCTTACCTCCTGCCCTTGCGAAATTTGAAAACTCTAAGGACGAGGATGAATACACTGGTGTTATCATTGATCCATCAGGTCCTCCCAAGGAATCTACGGGGTTTTCTTTCCTTAGTTCTCACGTTATGGATGATCAAATCACAGAACTTCAGCAACAGGGTTCTGCTGCCACCGGAATGGAGTTGGAAAGACTTAAGCATGATTATGGAAAATCCAAGCAAATGTTACAACACTGGAGAAAAATGTACGACAATTTACATCAATTTTGTGTTAATGAGCTTCTGGATGGCAATCAAACTAAAAATATAGAAGGCAATTCCACTTGA

Protein sequence

MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGSVLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGVIIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRKMYDNLHQFCVNELLDGNQTKNIEGNST*

Homology

[Close]

BLAST of CsaV3_4G034460 vs. NCBI nr
Match: XP_011654116.2 (protein ROOT INITIATION DEFECTIVE 3 [Cucumis sativus])

HSP 1 Score: 921.8 bits (2381), Expect = 2.3e-264
Identity = 447/447 (100.00%), Postives = 447/447 (100.00%), Query Frame = 0


Query: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60
           MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS
Sbjct: 63  MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 122

Query: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 123 VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 182

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV
Sbjct: 183 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 242

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 243 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 302

Query: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN
Sbjct: 303 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 362

Query: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV 360
           VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV
Sbjct: 363 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV 422

Query: 361 IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK 420
           IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK
Sbjct: 423 IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK 482

Query: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 448
           MYDNLHQFCVNELLDGNQTKNIEGNST
Sbjct: 483 MYDNLHQFCVNELLDGNQTKNIEGNST 509

[Close]

BLAST of CsaV3_4G034460 vs. NCBI nr
Match: KGN55205.1 (hypothetical protein Csa_012375 [Cucumis sativus])

HSP 1 Score: 921.8 bits (2381), Expect = 2.3e-264
Identity = 447/447 (100.00%), Postives = 447/447 (100.00%), Query Frame = 0


Query: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60
           MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60

Query: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300

Query: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV 360
           VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV 360

Query: 361 IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK 420
           IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK
Sbjct: 361 IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK 420

Query: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 448
           MYDNLHQFCVNELLDGNQTKNIEGNST
Sbjct: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 447

[Close]

BLAST of CsaV3_4G034460 vs. NCBI nr
Match: XP_008452567.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo])

HSP 1 Score: 896.3 bits (2315), Expect = 1.0e-256
Identity = 434/447 (97.09%), Postives = 440/447 (98.43%), Query Frame = 0


Query: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60
           MVLLVASSSIDSGIGCWDLHTG+EQLRYKSCASPPHGLVCVG KFLACSQLRD AATAGS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60

Query: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASN+EGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLL+SGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPSSSDYGLHILGS+SNQSKSVTSLAYCSSGNLLISG EDGAIRVWDTRTNN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGYEDGAIRVWDTRTNN 300

Query: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV 360
           VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRP+LPPALAKFENSKDEDEYTGV
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360

Query: 361 IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK 420
           IIDPSGPPKES  FSFLSSHVMD+QITELQQQGSAAT MELERLKHDYGKSKQMLQHWRK
Sbjct: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420

Query: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 448
           MYDNLHQFCVNELLDGNQTKNIEGNST
Sbjct: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 447

[Close]

BLAST of CsaV3_4G034460 vs. NCBI nr
Match: XP_038898957.1 (protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida])

HSP 1 Score: 847.8 bits (2189), Expect = 4.2e-242
Identity = 411/446 (92.15%), Postives = 426/446 (95.52%), Query Frame = 0


Query: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60
           MVL+VASSSIDSGIGCWDLHTG+EQLRYKSCASP HGLVCVG +FLACSQLRDPAATAGS
Sbjct: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATAGS 60

Query: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASN EGTYIVGGG SGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNDEGTYIVGGGLSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLL+SGSEDGCIRVW+L+TVFDDGWQREAKHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWALLTVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGG NAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIID IALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDVIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPS+ DYGLHILGS+SNQSKSVT+LAYCSSGNLLISGSEDGAIRVWDTRTNN
Sbjct: 241 YTAALNAKCPSTGDYGLHILGSLSNQSKSVTALAYCSSGNLLISGSEDGAIRVWDTRTNN 300

Query: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV 360
           VIRVFRHSKGPVNNILLV+QQ LPKSQSTSQG LRKHR LLPPALAKFENSKDEDE TGV
Sbjct: 301 VIRVFRHSKGPVNNILLVRQQVLPKSQSTSQGFLRKHRSLLPPALAKFENSKDEDEDTGV 360

Query: 361 IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK 420
           II P+G PKES GF  LSSHVMD+QITELQQQGSAA GMELERLK+D GKS QMLQHWRK
Sbjct: 361 IIGPTGLPKESMGFPALSSHVMDNQITELQQQGSAANGMELERLKYDCGKSMQMLQHWRK 420

Query: 421 MYDNLHQFCVNELLDGNQTKNIEGNS 447
           MYDNLHQFCVNELLDG+QTKNI+GNS
Sbjct: 421 MYDNLHQFCVNELLDGDQTKNIQGNS 446

[Close]

BLAST of CsaV3_4G034460 vs. NCBI nr
Match: KAA0064393.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo var. makuwa] >TYK20193.1 protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo var. makuwa])

HSP 1 Score: 841.3 bits (2172), Expect = 4.0e-240
Identity = 408/421 (96.91%), Postives = 414/421 (98.34%), Query Frame = 0


Query: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60
           MVLLVASSSIDSGIGCWDLHTG+EQLRYKSCASPPHGLVCVG KFLACSQLRD AATAGS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60

Query: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASN+EGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLL+SGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPSSSDYGLHILGS+SNQSKSVTSLAYCSSGNLLISG EDGAIRVWDTRTNN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGYEDGAIRVWDTRTNN 300

Query: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV 360
           VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRP+LPPALAKFENSKDEDEYTGV
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360

Query: 361 IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK 420
           IIDPSGPPKES  FSFLSSHVMD+QITELQQQGSAAT MELERLKHDYGKSKQMLQHWRK
Sbjct: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420

Query: 421 M 422
           M
Sbjct: 421 M 421

[Close]

BLAST of CsaV3_4G034460 vs. ExPASy Swiss-Prot
Match: Q9M3B4 (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 2.7e-143
Identity = 256/436 (58.72%), Postives = 322/436 (73.85%), Query Frame = 0


Query: 2   VLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGSV 61
           + ++ASSSID GIG WDL TG+EQL++K CASP HGL  VG KFLA SQL     T+GS+
Sbjct: 3   ITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQL-SARNTSGSI 62

Query: 62  LYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYR 121
            YWSW+KPQ EVKS+P EPI ALA+N+EGTY+VGGG SGDIYLWEV +G+LLKKWH HYR
Sbjct: 63  FYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYR 122

Query: 122 AVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIVV 181
           +VTCLVFS DDSLLVSGS+DG IRVWSLI +FDD  +++   LYEH+F  H + VTDIV+
Sbjct: 123 SVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVI 182

Query: 182 GYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIY 241
            YGG NA+IISSS DRTCKVWSLS+GKLL+NIIFPS+I+A+ALDPG  VFY G RD KIY
Sbjct: 183 DYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIY 242

Query: 242 TAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNV 301
             A+NA    +S+YG  +LGS+S + K++T LAYC+ GNLLISGSEDG + VWD ++   
Sbjct: 243 IGAINA----TSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKSLRH 302

Query: 302 IRVFRHS----KGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEY 361
           +R   H+    KGPVNNI +V++  +  S  T Q S +    L+PP L K+E    ED  
Sbjct: 303 VRTLIHAKGSRKGPVNNIQIVRKTIVANSNKT-QVSWKSRGALIPPPLEKYERPV-EDTM 362

Query: 362 TGVI-IDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQ 421
            G++ +DP          SFLS+ ++D+Q+ ELQQQGSAAT ME+ERLK +Y +S QM +
Sbjct: 363 DGIVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQGSAATEMEMERLKLEYKRSLQMNE 422

Query: 422 HWRKMYDNLHQFCVNE 433
            W+K Y+NL Q  + E
Sbjct: 423 QWQKNYENLLQVVMEE 431

[Close]

BLAST of CsaV3_4G034460 vs. ExPASy Swiss-Prot
Match: A0A1L8HX76 (WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.9e-42
Identity = 100/305 (32.79%), Postives = 160/305 (52.46%), Query Frame = 0


Query: 17  WDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGSVLYWSWS-KPQVEVKS 76
           W+  TGS  L Y+   +   GL  +G ++L   QL         +  W    + Q++ K 
Sbjct: 23  WEPVTGSVLLTYRGGNTSHRGLAVLGGQYLLGGQL-----GKNYINVWELQRRDQLQQKI 82

Query: 77  FPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDSLL 136
               P+  L+++  G Y+V  G +  IYLWEV +G LL   ++HY+ VTCL F++D S +
Sbjct: 83  VCPGPVNCLSASPNGLYLV-AGIAESIYLWEVSTGHLLAILNSHYQDVTCLTFTDDSSHI 142

Query: 137 VSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSV 196
           +SG++D  + VW L +V      R  +  Y   ++ H+LP+TD+  G GG  A + +SS+
Sbjct: 143 ISGAKDSLVLVWGLYSVLQVETSRGPEPRY--VWSRHSLPITDVQCGIGGPQARVATSSL 202

Query: 197 DRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKCPSSSDY 256
           D+T K+W +  G LL +++F   I ++A DP E+  + GG DG IY   L    P   + 
Sbjct: 203 DQTIKLWDICSGDLLVSVLFDVRITSVAFDPAEYHLFCGGSDGVIYQVDLYT-TPEQRER 262

Query: 257 GLHILGSI--SNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVIRVFRHSKGPVN 316
             H    +        VT L+    G++LISGS D  + VWD ++   +R   H +GPV 
Sbjct: 263 PFHPEQEMVFKGHRNQVTCLSVSLDGSMLISGSHDETVCVWDIQSKQSLRSVPH-RGPVT 317

Query: 317 NILLV 319
           N+ ++
Sbjct: 323 NVFII 317

[Close]

BLAST of CsaV3_4G034460 vs. ExPASy Swiss-Prot
Match: Q3SZD4 (WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.4e-41
Identity = 99/312 (31.73%), Postives = 159/312 (50.96%), Query Frame = 0


Query: 17  WDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGSVLYWSWS---KPQVEV 76
           W+LH+G+  L Y+   + P GL  +  ++L  +QL       G     +W    K Q++ 
Sbjct: 23  WELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL-------GKNYICAWELQRKDQLQQ 82

Query: 77  KSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDS 136
           K     P+  L ++  G Y++  G S +IYLWEV +G LL     HY+ V+CL F+ D S
Sbjct: 83  KIMCPGPVTCLTTSPNGLYVL-AGISENIYLWEVSTGNLLVILSRHYQDVSCLQFTGDSS 142

Query: 137 LLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISS 196
             +SG +D  +  WSL +V      R       H ++ H LP+TD+  G+GG  A + ++
Sbjct: 143 HFISGGKDCLVLAWSLCSVLQADPSRTPAP--RHVWSRHTLPITDLHCGFGGPLARVATA 202

Query: 197 SVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAAL-------N 256
           S+D+T K+W +S G+LL +++F   I A+ +D  EH  + GG DG I+   L        
Sbjct: 203 SLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGSDGSIFQVDLCTWPGQRE 262

Query: 257 AKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVIRVFR 316
                  ++G    G        VT L+  + G++L+SGS D  +R+WD ++   +R   
Sbjct: 263 KSFQPEQEHGKVFRG----HRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSQQCLRTVT 319

Query: 317 HSKGPVNNILLV 319
             KGPV N  ++
Sbjct: 323 -LKGPVTNACIM 319

[Close]

BLAST of CsaV3_4G034460 vs. ExPASy Swiss-Prot
Match: Q9BV38 (WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2)

HSP 1 Score: 172.2 bits (435), Expect = 1.4e-41
Identity = 100/308 (32.47%), Postives = 162/308 (52.60%), Query Frame = 0


Query: 17  WDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGSVLYWSWSKPQVEVKSF 76
           W+LH+G+  L Y+   + P GL  +  ++L  +QL     +A  +      K Q++ K  
Sbjct: 23  WELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQLGKNYISAWEL----QRKDQLQQKIM 82

Query: 77  PAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDSLLV 136
              P+  L ++  G Y++  G +  I+LWEV +G LL     HY+ V+CL F+ D S  +
Sbjct: 83  CPGPVTCLTASPNGLYVL-AGVAESIHLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFI 142

Query: 137 SGSEDGCIRVWSLITVFDDGWQR--EAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSS 196
           SG +D  + VWSL +V      R    +H++ H    H LP+TD+  G+GG  A + +SS
Sbjct: 143 SGGKDCLVLVWSLCSVLQADPSRIPAPRHVWSH----HALPITDLHCGFGGPLARVATSS 202

Query: 197 VDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKCPSSSD 256
           +D+T K+W +S G+LL +++F   I A+ +D  EH  + GG +G I+   L    P   +
Sbjct: 203 LDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGSEGSIFQVDL-FTWPGQRE 262

Query: 257 YGLH---ILGSI-SNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVIRVFRHSKG 316
              H     G +       VT L+  + G++L+SGS D  +R+WD ++   IR     KG
Sbjct: 263 RSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQCIRTVA-LKG 319

Query: 317 PVNNILLV 319
           PV N  ++
Sbjct: 323 PVTNAAIL 319

[Close]

BLAST of CsaV3_4G034460 vs. ExPASy Swiss-Prot
Match: Q499N3 (WD repeat-containing protein 18 OS=Rattus norvegicus OX=10116 GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.4e-40
Identity = 98/313 (31.31%), Postives = 158/313 (50.48%), Query Frame = 0


Query: 17  WDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGSVLYWSWS---KPQVEV 76
           W+LH+G+  L Y+   + P GL  +  ++L        AA  G     +W    K Q++ 
Sbjct: 23  WELHSGANLLTYRGGQAGPRGLALLNGEYLL-------AAQQGKNYICAWELQRKDQLQQ 82

Query: 77  KSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDS 136
           K     P+  L +   G Y++  G +  IYLWEV +G LL     HY+ V+CL F+ D S
Sbjct: 83  KIMCPGPVTCLTTAPNGLYVL-AGIAESIYLWEVSTGNLLVILSRHYQDVSCLKFTGDGS 142

Query: 137 LLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISS 196
             VS  +D  +  WSL +V      R       H ++ H LP+TD+  G+GG  A + ++
Sbjct: 143 HFVSAGKDCLVLAWSLCSVLQADPSRILAP--RHVWSQHTLPITDLHCGFGGPMARVATA 202

Query: 197 SVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKCPSSS 256
           S+D+T K+W++S G LL +++F   I ++ +D  EH  + GG DG I+   L ++ P   
Sbjct: 203 SLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCGGSDGSIFQVDLCSR-PGPR 262

Query: 257 DYGL---HILGSI-SNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVIRVFRHSK 316
           +         G +       VT L+  + G++L+SGS D ++R+WD ++   +R     K
Sbjct: 263 EQSFQPEQNTGKVFKGHRNQVTCLSVSTDGSILLSGSHDESVRLWDVKSKQCVRTV-PLK 322

Query: 317 GPVNNILLVQQQP 323
           GPV N  +    P
Sbjct: 323 GPVTNAAITLAPP 323

[Close]

BLAST of CsaV3_4G034460 vs. ExPASy TrEMBL
Match: A0A0A0KZT0 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639920 PE=4 SV=1)

HSP 1 Score: 921.8 bits (2381), Expect = 1.1e-264
Identity = 447/447 (100.00%), Postives = 447/447 (100.00%), Query Frame = 0


Query: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60
           MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60

Query: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300

Query: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV 360
           VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV 360

Query: 361 IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK 420
           IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK
Sbjct: 361 IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK 420

Query: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 448
           MYDNLHQFCVNELLDGNQTKNIEGNST
Sbjct: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 447

[Close]

BLAST of CsaV3_4G034460 vs. ExPASy TrEMBL
Match: A0A1S3BU36 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4 SV=1)

HSP 1 Score: 896.3 bits (2315), Expect = 5.0e-257
Identity = 434/447 (97.09%), Postives = 440/447 (98.43%), Query Frame = 0


Query: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60
           MVLLVASSSIDSGIGCWDLHTG+EQLRYKSCASPPHGLVCVG KFLACSQLRD AATAGS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60

Query: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASN+EGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLL+SGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPSSSDYGLHILGS+SNQSKSVTSLAYCSSGNLLISG EDGAIRVWDTRTNN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGYEDGAIRVWDTRTNN 300

Query: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV 360
           VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRP+LPPALAKFENSKDEDEYTGV
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360

Query: 361 IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK 420
           IIDPSGPPKES  FSFLSSHVMD+QITELQQQGSAAT MELERLKHDYGKSKQMLQHWRK
Sbjct: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420

Query: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 448
           MYDNLHQFCVNELLDGNQTKNIEGNST
Sbjct: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 447

[Close]

BLAST of CsaV3_4G034460 vs. ExPASy TrEMBL
Match: A0A5D3D9F7 (Protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003270 PE=4 SV=1)

HSP 1 Score: 841.3 bits (2172), Expect = 1.9e-240
Identity = 408/421 (96.91%), Postives = 414/421 (98.34%), Query Frame = 0


Query: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60
           MVLLVASSSIDSGIGCWDLHTG+EQLRYKSCASPPHGLVCVG KFLACSQLRD AATAGS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60

Query: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASN+EGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLL+SGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPSSSDYGLHILGS+SNQSKSVTSLAYCSSGNLLISG EDGAIRVWDTRTNN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGYEDGAIRVWDTRTNN 300

Query: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV 360
           VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRP+LPPALAKFENSKDEDEYTGV
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360

Query: 361 IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK 420
           IIDPSGPPKES  FSFLSSHVMD+QITELQQQGSAAT MELERLKHDYGKSKQMLQHWRK
Sbjct: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420

Query: 421 M 422
           M
Sbjct: 421 M 421

[Close]

BLAST of CsaV3_4G034460 vs. ExPASy TrEMBL
Match: A0A6J1FMG7 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita moschata OX=3662 GN=LOC111446741 PE=4 SV=1)

HSP 1 Score: 813.5 bits (2100), Expect = 4.3e-232
Identity = 393/442 (88.91%), Postives = 417/442 (94.34%), Query Frame = 0


Query: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60
           MVL+VASSS+DSGIGCWDLHTG+EQLRYKSCASP HGLVCVG +FLACSQLRDPAAT+GS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASN+EGTYIVGGGFSGDIYLWEVLSGRLL KWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180
           RAVTCLVFSEDDSLL+SGSEDGC+RVWSL+ VFDDGWQRE+KHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           +GYGG NAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAK PSSSDYGLHILGS+SNQSKSVTSLAYCSSGNLLISGSEDGAI+VWDTRTNN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQ--STSQGSLRKHRPLLPPALAKFENSKDEDEYT 360
           +IRV +HSKGPVNN+L+V+QQ LP SQ   TSQGSLRKHR LLPPALAKF NSKD+DE T
Sbjct: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHW 420
           GVII  SGPP ES GFS +SSHVMD+QITELQQQGSAATGMELERLK DYGKS QM Q W
Sbjct: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420

Query: 421 RKMYDNLHQFCVNELLDGNQTK 441
           RK+YDNLHQ+CVNELLDG+QTK
Sbjct: 421 RKLYDNLHQYCVNELLDGDQTK 442

[Close]

BLAST of CsaV3_4G034460 vs. ExPASy TrEMBL
Match: A0A6J1IYT8 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita maxima OX=3661 GN=LOC111481134 PE=4 SV=1)

HSP 1 Score: 805.4 bits (2079), Expect = 1.2e-229
Identity = 390/442 (88.24%), Postives = 413/442 (93.44%), Query Frame = 0


Query: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60
           MVL+VASSS+DSGIGCWDLHTG+EQL YKSCASP HGLVCVG +FLACSQLRDPAAT+GS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLCYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASN+EGTYIVGGGFSGDIYLWEVLSGRLL KWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180
           RAVTCL FSEDDSLL+SGSEDGC+RVWSL+ VFDDGWQRE+KHLYEHSFTGHNLPVTDIV
Sbjct: 121 RAVTCLEFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           +GYGG NAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAK PSSSDYGLHILGS+SNQSKSVTSLAYCSSGNLLISGSEDGAI+VWDTRTNN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQ--STSQGSLRKHRPLLPPALAKFENSKDEDEYT 360
           +IRV +HSKGPVNN+L+VQ Q LP SQ   TSQGSLRKHR LLPPALAKF NSKD+DE T
Sbjct: 301 IIRVLKHSKGPVNNLLIVQHQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHW 420
           GVII  SGPP ES GFS +SSHVMD QITELQQQGSAATGMELERLK +YGKS QM Q W
Sbjct: 361 GVIIGRSGPPMESMGFSPISSHVMDHQITELQQQGSAATGMELERLKREYGKSMQMQQQW 420

Query: 421 RKMYDNLHQFCVNELLDGNQTK 441
           RK+YDNLHQ+CVNELLDG+QTK
Sbjct: 421 RKLYDNLHQYCVNELLDGDQTK 442

[Close]

BLAST of CsaV3_4G034460 vs. TAIR 10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 510.0 bits (1312), Expect = 1.9e-144
Identity = 256/436 (58.72%), Postives = 322/436 (73.85%), Query Frame = 0


Query: 2   VLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGSV 61
           + ++ASSSID GIG WDL TG+EQL++K CASP HGL  VG KFLA SQL     T+GS+
Sbjct: 3   ITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQL-SARNTSGSI 62

Query: 62  LYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYR 121
            YWSW+KPQ EVKS+P EPI ALA+N+EGTY+VGGG SGDIYLWEV +G+LLKKWH HYR
Sbjct: 63  FYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYR 122

Query: 122 AVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIVV 181
           +VTCLVFS DDSLLVSGS+DG IRVWSLI +FDD  +++   LYEH+F  H + VTDIV+
Sbjct: 123 SVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVI 182

Query: 182 GYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIY 241
            YGG NA+IISSS DRTCKVWSLS+GKLL+NIIFPS+I+A+ALDPG  VFY G RD KIY
Sbjct: 183 DYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIY 242

Query: 242 TAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNV 301
             A+NA    +S+YG  +LGS+S + K++T LAYC+ GNLLISGSEDG + VWD ++   
Sbjct: 243 IGAINA----TSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKSLRH 302

Query: 302 IRVFRHS----KGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEY 361
           +R   H+    KGPVNNI +V++  +  S  T Q S +    L+PP L K+E    ED  
Sbjct: 303 VRTLIHAKGSRKGPVNNIQIVRKTIVANSNKT-QVSWKSRGALIPPPLEKYERPV-EDTM 362

Query: 362 TGVI-IDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQ 421
            G++ +DP          SFLS+ ++D+Q+ ELQQQGSAAT ME+ERLK +Y +S QM +
Sbjct: 363 DGIVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQGSAATEMEMERLKLEYKRSLQMNE 422

Query: 422 HWRKMYDNLHQFCVNE 433
            W+K Y+NL Q  + E
Sbjct: 423 QWQKNYENLLQVVMEE 431

[Close]

BLAST of CsaV3_4G034460 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 2.0e-16
Identity = 58/213 (27.23%), Postives = 97/213 (45.54%), Query Frame = 0


Query: 87  NHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDSLLVSGSEDGCIRV 146
           N +   IV G F   + +W+V +G+ LK   AH   VT + F+ D SL+VS S DG  R+
Sbjct: 122 NPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRI 181

Query: 147 WSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSVDRTCKVWSLSK 206
           W      D G      H  +      N PV+   V +      I+  ++D T ++W++S 
Sbjct: 182 W------DSG----TGHCVKTLIDDENPPVS--FVRFSPNGKFILVGTLDNTLRLWNISS 241

Query: 207 GKLLRNIIFP-----SIIDAIALDPGEHVFYGGGRDGKIYTAALNAKCPSSSDYGLHILG 266
            K L+           I  A ++  G+ +   G  D  ++   LN+K          +L 
Sbjct: 242 AKFLKTYTGHVNAQYCISSAFSVTNGKRI-VSGSEDNCVHMWELNSK---------KLLQ 301

Query: 267 SISNQSKSVTSLAYCSSGNLLISGSEDGAIRVW 295
            +   +++V ++A   + NL+ SGS D  +R+W
Sbjct: 302 KLEGHTETVMNVACHPTENLIASGSLDKTVRIW 312

[Close]

BLAST of CsaV3_4G034460 vs. TAIR 10
Match: AT1G18080.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 7.7e-16
Identity = 64/257 (24.90%), Postives = 109/257 (42.41%), Query Frame = 0


Query: 89  EGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDSLLVSGSEDGCIRVWS 148
           +G + + G + G++ LW++ +G   +++  H + V  + FS D+  +VS S D  I++W+
Sbjct: 74  DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 133

Query: 149 LITVFDDGWQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSVDRTCKVWSLSKGK 208
            +         E K+       GH   V+ +          I+S+S D+T KVW+LS  K
Sbjct: 134 TL--------GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 193

Query: 209 LLRNII-FPSIIDAIALDPGEHVFYGGGRDG-----------KIYT----AALNAKCPSS 268
           L   +      +  +A+ P   +   GG+DG           K+Y+    + ++A C S 
Sbjct: 194 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP 253

Query: 269 SDYGL-----HILGSISNQSKSV------------------------------TSLAYCS 295
           + Y L     H +     +SKS+                              TSL + +
Sbjct: 254 NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 313

[Close]

BLAST of CsaV3_4G034460 vs. TAIR 10
Match: AT4G02730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-13
Identity = 62/264 (23.48%), Postives = 111/264 (42.05%), Query Frame = 0


Query: 81  IMALASNHEGTYIVGGGFSGDIYLWEVLSG-RLLKKWHAHYRAVTCLVFSEDDSLLVSGS 140
           I  LA + +  Y         + +W+  S    LK    H   V C+ F+   +L+VSGS
Sbjct: 88  ISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGS 147

Query: 141 EDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSVDRTC 200
            D  IR+W + T                    H++P++ +     G  ++I+S+S D +C
Sbjct: 148 FDETIRIWEVKT-----------GKCVRMIKAHSMPISSVHFNRDG--SLIVSASHDGSC 207

Query: 201 KVWSLSKGKLLRNII---FPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKCPSSSDYG 260
           K+W   +G  L+ +I    P++            F     +GK    A        S+Y 
Sbjct: 208 KIWDAKEGTCLKTLIDDKSPAV-----------SFAKFSPNGKFILVATLDSTLKLSNYA 267

Query: 261 ----LHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVIRVFRHSKGPV 320
               L +    +N+   +TS    ++G  ++SGSED  + +WD +  N++   +  +G  
Sbjct: 268 TGKFLKVYTGHTNKVFCITSAFSVTNGKYIVSGSEDNCVYLWDLQARNIL---QRLEGHT 324

Query: 321 NNILLVQQQPLPKSQSTSQGSLRK 337
           + ++ V   P+    S+S   L K
Sbjct: 328 DAVISVSCHPVQNEISSSGNHLDK 324

[Close]

BLAST of CsaV3_4G034460 vs. TAIR 10
Match: AT2G47410.1 (WD40/YVTN repeat-like-containing domain;Bromodomain )

HSP 1 Score: 74.7 bits (182), Expect = 2.1e-13
Identity = 72/263 (27.38%), Postives = 107/263 (40.68%), Query Frame = 0


Query: 113 LKKWHAHYRAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGH 172
           +KK   H  AV C +F      +++GS+D  +++WS+ T            L   S  GH
Sbjct: 229 IKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-----------LCLASCRGH 288

Query: 173 NLPVTDIVVGYGGFNAIIISSSVDRTCKVWSLSKG---KLLRNIIFPSIIDAIALDPGEH 232
              +TD+ V     NA++ S+S D   +VW L  G    +LR       + AIA  P + 
Sbjct: 289 EGDITDLAVSSN--NALVASASNDFVIRVWRLPDGMPISVLRG--HTGAVTAIAFSPRQA 348

Query: 233 VFY---GGGRDG--KIYTAALN-----AKCPSSSDYGLHILGSISN--QSKSVTSLAYCS 292
             Y       DG  +I+ A  +        PS SD      GS SN  QS  +   AY +
Sbjct: 349 SVYQLLSSSDDGTCRIWDARYSQWLPRIYVPSPSDAN---TGSTSNASQSHQILCCAYNA 408

Query: 293 SGNLLISGSEDGAIRVWDTRTNNV---------IRVFRHSKGPVNNILLVQQQPLPKSQS 352
           +G + ++GS D   RVW     N+         + V R  +  VN +        PKS +
Sbjct: 409 NGTIFVTGSSDSNARVWSASKPNLDDAEQPTHELDVLRGHENDVNYVQFSGCAVAPKSST 465

The following BLAST results are available for this feature:

BLAST of CsaV3_4G034460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654116.2	2.3e-264	100.00	protein ROOT INITIATION DEFECTIVE 3 [Cucumis sativus]	[more]
KGN55205.1	2.3e-264	100.00	hypothetical protein Csa_012375 [Cucumis sativus]	[more]
XP_008452567.1	1.0e-256	97.09	PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo]	[more]
XP_038898957.1	4.2e-242	92.15	protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida]	[more]
KAA0064393.1	4.0e-240	96.91	protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo var. makuwa] >TYK20193.1 prote...	[more]

BLAST of CsaV3_4G034460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M3B4	2.7e-143	58.72	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1...	[more]
A0A1L8HX76	7.9e-42	32.79	WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1	[more]
Q3SZD4	1.4e-41	31.73	WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1	[more]
Q9BV38	1.4e-41	32.47	WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2	[more]
Q499N3	4.4e-40	31.31	WD repeat-containing protein 18 OS=Rattus norvegicus OX=10116 GN=Wdr18 PE=2 SV=1	[more]

BLAST of CsaV3_4G034460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZT0	1.1e-264	100.00	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G...	[more]
A0A1S3BU36	5.0e-257	97.09	protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4...	[more]
A0A5D3D9F7	1.9e-240	96.91	Protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1FMG7	4.3e-232	88.91	protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita moschata OX=3662 GN=LOC11144674...	[more]
A0A6J1IYT8	1.2e-229	88.24	protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita maxima OX=3661 GN=LOC111481134 ...	[more]

BLAST of CsaV3_4G034460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49180.1	1.9e-144	58.72	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G49660.1	2.0e-16	27.23	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G18080.1	7.7e-16	24.90	Transducin/WD40 repeat-like superfamily protein	[more]
AT4G02730.1	1.2e-13	23.48	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G47410.1	2.1e-13	27.38	WD40/YVTN repeat-like-containing domain;Bromodomain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 282..296 score: 40.4 coord: 135..149 score: 41.87 coord: 190..204 score: 36.27
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 206..244 e-value: 350.0 score: 1.0 coord: 109..148 e-value: 3.2E-10 score: 50.0 coord: 256..295 e-value: 6.2E-7 score: 39.0 coord: 69..106 e-value: 1.0 score: 17.0 coord: 162..203 e-value: 0.0046 score: 26.2
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 111..148 e-value: 3.3E-7 score: 30.9 coord: 262..295 e-value: 1.9E-6 score: 28.5 coord: 167..203 e-value: 0.003 score: 18.3
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 169..212 score: 9.606159
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 116..149 score: 14.117617
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 263..304 score: 16.055872
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 2..215 e-value: 2.5E-33 score: 117.2
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 216..322 e-value: 1.7E-15 score: 59.1
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 2..433
None	No IPR available	PANTHER	PTHR18763:SF0	WD REPEAT-CONTAINING PROTEIN 18	coord: 2..433
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 263..298 score: 12.209223
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 116..149 score: 11.681953
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 282..296
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 5..317

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G034460.1	CsaV3_4G034460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding