CsaV3_4G034340 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G034340
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Cold regulated protein 27
Location	chr4: 24327516 .. 24329951 (-)
RNA-Seq Expression	CsaV3_4G034340
Synteny	CsaV3_4G034340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAATAAAAGAGGGTATTTTCGTCATTTCACCTCCAATTTATCCTAAATCTCAACTTTTCTACAATCAATCCTAAAACTCTATTTCTACCCCATTTTTGGCCTATTTTTGTCAATTCCCCATCCTTCTTCCTCTTCCCCATTCATGGAATTGTTGCCTCCAAATTTGGACAGTCTCAACCCTAGAGAAACTCGTGCTGACTCACTTGTTTCTGAATTCGTCAAGGACCAGTCTACCGAGTTTTCCCGCCCGATTGAATCTTCTAGCCGGGCACTTACCCTACTTACTTCTTTCGCATACTTTCAATTATCGTTGTTTTTTTTTATGTGTTGTGTTGTTCCGATTAGGTTTTGCTTATGTGATGTTTCGTATCTGCAATTTCATGCTATGTCACCGTTACTGCACTGTTTCTCTTTATTTTCGTGTTAAAAGTGAATATATATATTATATATATACGAATTAAACAATTGAAAGAAAGAGGAAGTGGAAGAATACAGTTCTTCTTTCGCACTTACCTCTCGTGACCGGAGGTTTTTGTTTTTTTATTTTGTGCGGCTCTGTTTGGATCGATCTTGCCCTTTGTCGATGGAATTACTAGGGCTGTGTAAGGGGTTTGAAACTGTGGAGAATAATTCTGGAAATTCAGCACGAGTTTTGATTGTTCAACATTATGATTTGTCATTAAGATCACTAATAGTATTGTTTTTGTGTTGTTTATTAAGATAGACCATGTACTTTCCGCGGGAATTGCTGATAATGCGGTTTCGGTTTTAGGGCACTCATATGACGGATTCTGTACCTTCTGATTGGACCGACGAGAAGCACCATTTGTTTCTTGAATCCATGGAAGCATCATTTGTCAGCCAAATGTTTGATTCTGGGCATTCTGTTGGCTCCTGCCCCACCAAGGATAATTCTTCACGCACAAAATTGCTCAGCAAAAGCCAGTCCGCCTCTCACGGCCATTCACAGTTTGGCCAGGTTCAGTGCCAATTGCATTTCCTTGACGAGTTTTAACTCTTTTTCTGATCATGGGCTTGTGAATTCTCAATTTGCTCATTTCTTGCTTTTGTTTATTCAGTTTAAGGTTCTTCGACGAGGCAGCTGGAAGAACATTAATTTTGAACCAACTGAATCTCGATCAAATTTTTTGAATGAATACCAAGCTCTCTCACATAATCCTTGGATACATCACTTTAGAGCTGCTCGTAAAAACAAAAATGTCGTTTGCAAAAGTCAAGCTATCGGTTCAAGAGGAAGAAACTCGCTGTCATTAGGAGCAGCTAATAATTCAGGACCTATACGTGCTTCCGACTCTGATTTGTCCCAACAATATATCAGCAATAATAAAGGTAAATCTTTTGGCTTTAGACCTTATATATTATCCATATTTTATTGACAGATTTGTGGCTCCCCTTGGTTGTAATTGTAATTTAGTTTATCAAGTTTAAGTTTGCTAGTTAGTGATTCTACATTGGAAGATGTTTGCTCAGTGTCTGGTATCTACTACCAGAAAGTTCCGAGTCAAAACAAATTGATACAGTTCAAGTCAAACTGAACTCTTTATTGTAATCTGCTTTGTCCAAATCCCAATTATGATTTTTATTGCAAATTGTAAGGCAATCGTAATTTCGCTGATATGAGACTGAATTATTTTAGATGATAATAACTGTTATAACAATAAGCTCTACAAATGATTGCCACTTCAGAAGTTTCGGATCAGAACTTTGTTGATGAAGTTATAGAAGTTGAAAAGGGAAGCATTGATTGCAATGCCAAAAGGGCCAACGCATCAGAAACAAATGCTTTGATCAATGACCAGGTAATTCAAGTGATATCAACTTAACTACCATCTCTTCCTCCAAAATGATGATCACTGATTTCTTTTTAGGTTGTTCCTTAAATTCCATGAAAAGGAGATGGTGTTTAACAAGAATTATCTTACAGCCAGAAGATAGCTAGATCCCAGATTGTCTCCAAAATATGCCAAAAGACTTGTCGACTGCTTTTCTTACTCGGGAAGGACTAAAGATGGGAGATTGTTGGTGAAGTCAATAATGCTCATCTTGATGTTCTTGGGTTTGTTCTGGTAATGTAAGCTCTAATACCTAATACCTTCTGGTGCATGAAGTTACGTATAGTAATTAGTACATCAGCAATTATGATTTTGACTGGGTAGATGTCTATGGTACTGCCATTCAGCATTTGTGTGTGTATATATATTTCTTTTGGTTCATCAAGAATATGAAGCATTTATTCTAGTTTTTCGAATGAAATAGTCAGAAAATTTCAATTTTATTCCTCAATTGTTCATGAGTTTATTTATTGGAACAATTATTGGGCAATTGATTCCTTGTCAATTGAAATAGACGTTTTATTCACATCGTTTTGCTTCTGTTGCGTTGTCCATTAAATGAGGATAACAAGATTTTCCC

mRNA sequence

ATGGAATTGTTGCCTCCAAATTTGGACAGTCTCAACCCTAGAGAAACTCGTGCTGACTCACTTGTTTCTGAATTCGTCAAGGACCAGTCTACCGAGTTTTCCCGCCCGATTGAATCTTCTAGCCGGGGCACTCATATGACGGATTCTGTACCTTCTGATTGGACCGACGAGAAGCACCATTTGTTTCTTGAATCCATGGAAGCATCATTTGTCAGCCAAATGTTTGATTCTGGGCATTCTGTTGGCTCCTGCCCCACCAAGGATAATTCTTCACGCACAAAATTGCTCAGCAAAAGCCAGTCCGCCTCTCACGGCCATTCACAGTTTGGCCAGTTTAAGGTTCTTCGACGAGGCAGCTGGAAGAACATTAATTTTGAACCAACTGAATCTCGATCAAATTTTTTGAATGAATACCAAGCTCTCTCACATAATCCTTGGATACATCACTTTAGAGCTGCTCGTAAAAACAAAAATGTCGTTTGCAAAAGTCAAGCTATCGGTTCAAGAGGAAGAAACTCGCTGTCATTAGGAGCAGCTAATAATTCAGGACCTATACGTGCTTCCGACTCTGATTTGTCCCAACAATATATCAGCAATAATAAAGAAGTTTCGGATCAGAACTTTGTTGATGAAGTTATAGAAGTTGAAAAGGGAAGCATTGATTGCAATGCCAAAAGGGCCAACGCATCAGAAACAAATGCTTTGATCAATGACCAGCCAGAAGATAGCTAG

Coding sequence (CDS)

ATGGAATTGTTGCCTCCAAATTTGGACAGTCTCAACCCTAGAGAAACTCGTGCTGACTCACTTGTTTCTGAATTCGTCAAGGACCAGTCTACCGAGTTTTCCCGCCCGATTGAATCTTCTAGCCGGGGCACTCATATGACGGATTCTGTACCTTCTGATTGGACCGACGAGAAGCACCATTTGTTTCTTGAATCCATGGAAGCATCATTTGTCAGCCAAATGTTTGATTCTGGGCATTCTGTTGGCTCCTGCCCCACCAAGGATAATTCTTCACGCACAAAATTGCTCAGCAAAAGCCAGTCCGCCTCTCACGGCCATTCACAGTTTGGCCAGTTTAAGGTTCTTCGACGAGGCAGCTGGAAGAACATTAATTTTGAACCAACTGAATCTCGATCAAATTTTTTGAATGAATACCAAGCTCTCTCACATAATCCTTGGATACATCACTTTAGAGCTGCTCGTAAAAACAAAAATGTCGTTTGCAAAAGTCAAGCTATCGGTTCAAGAGGAAGAAACTCGCTGTCATTAGGAGCAGCTAATAATTCAGGACCTATACGTGCTTCCGACTCTGATTTGTCCCAACAATATATCAGCAATAATAAAGAAGTTTCGGATCAGAACTTTGTTGATGAAGTTATAGAAGTTGAAAAGGGAAGCATTGATTGCAATGCCAAAAGGGCCAACGCATCAGAAACAAATGCTTTGATCAATGACCAGCCAGAAGATAGCTAG

Protein sequence

MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAANNSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASETNALINDQPEDS*

Homology

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BLAST of CsaV3_4G034340 vs. NCBI nr
Match: KAE8649861.1 (hypothetical protein Csa_012756 [Cucumis sativus])

HSP 1 Score: 477.2 bits (1227), Expect = 8.2e-131
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60
           MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH
Sbjct: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120
           LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW
Sbjct: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120

Query: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180
           KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN
Sbjct: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180

Query: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASETNALINDQP 240
           NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASETNALINDQP
Sbjct: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASETNALINDQP 240

Query: 241 EDS 244
           EDS
Sbjct: 241 EDS 243

[Close]

BLAST of CsaV3_4G034340 vs. NCBI nr
Match: XP_011654107.2 (cold-regulated protein 27 [Cucumis sativus])

HSP 1 Score: 469.2 bits (1206), Expect = 2.2e-128
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60
           MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH
Sbjct: 55  MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 114

Query: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120
           LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW
Sbjct: 115 LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 174

Query: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180
           KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN
Sbjct: 175 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 234

Query: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASETNALINDQ 240
           NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASETNALINDQ
Sbjct: 235 NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASETNALINDQ 293

[Close]

BLAST of CsaV3_4G034340 vs. NCBI nr
Match: XP_008452552.1 (PREDICTED: uncharacterized protein LOC103493542 [Cucumis melo] >XP_008452553.1 PREDICTED: uncharacterized protein LOC103493542 [Cucumis melo] >XP_008452555.1 PREDICTED: uncharacterized protein LOC103493542 [Cucumis melo])

HSP 1 Score: 406.4 bits (1043), Expect = 1.8e-109
Identity = 207/224 (92.41%), Postives = 214/224 (95.54%), Query Frame = 0


Query: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60
           MELLP NLD+LN RE R+DSLVSEFVKD STEF RPIESSSRGTHMTDSVPSDWTDEKHH
Sbjct: 1   MELLPRNLDNLNSREARSDSLVSEFVKDGSTEFCRPIESSSRGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120
           LFLESMEASFVSQMFDSGHSVGSCP+KDNSSRTKLLSKSQSASH HS FGQFKVLRRGSW
Sbjct: 61  LFLESMEASFVSQMFDSGHSVGSCPSKDNSSRTKLLSKSQSASHVHSHFGQFKVLRRGSW 120

Query: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180
           KNINFEPTESRSNFLNEYQALSHNPWIHHF+AARKNKNV CKSQAIGSRGRNSLSL AAN
Sbjct: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFKAARKNKNVACKSQAIGSRGRNSLSLEAAN 180

Query: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNA 225
           NSGPIRAS+SDLSQQYIS+NKEVSDQNFVDEV+EVEKGS DCNA
Sbjct: 181 NSGPIRASNSDLSQQYISSNKEVSDQNFVDEVVEVEKGSRDCNA 224

[Close]

BLAST of CsaV3_4G034340 vs. NCBI nr
Match: XP_038896200.1 (cold-regulated protein 27 isoform X3 [Benincasa hispida])

HSP 1 Score: 394.4 bits (1012), Expect = 7.0e-106
Identity = 201/243 (82.72%), Postives = 218/243 (89.71%), Query Frame = 0


Query: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60
           MELLP NL++L   ETR+DS+VSEF KD+STEF+ P+ SSS+GTHMTDSVPSDWTDEKHH
Sbjct: 1   MELLPRNLENLKAVETRSDSIVSEFAKDESTEFALPVVSSSQGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120
           LFLESMEASFVSQMFDS HSVGSCP+K+NSSR KLL +SQSASH HS FGQFKVLRRGSW
Sbjct: 61  LFLESMEASFVSQMFDSVHSVGSCPSKENSSRAKLLGQSQSASHVHSHFGQFKVLRRGSW 120

Query: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180
           KNINFEPTESRSN LN+YQALSHNPWIHHFRAARKNKNV CKSQ+IGSRGRNSL  GAAN
Sbjct: 121 KNINFEPTESRSNLLNDYQALSHNPWIHHFRAARKNKNVACKSQSIGSRGRNSLPFGAAN 180

Query: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASETNALINDQP 240
           NSG +RASDSDLSQQ+IS+NKEVSDQNFVDE  E EKGS DCNAKR    +TNALINDQP
Sbjct: 181 NSGSMRASDSDLSQQFISSNKEVSDQNFVDE--EAEKGSSDCNAKRVKTPQTNALINDQP 240

Query: 241 EDS 244
           EDS
Sbjct: 241 EDS 241

[Close]

BLAST of CsaV3_4G034340 vs. NCBI nr
Match: XP_038896198.1 (cold-regulated protein 27 isoform X1 [Benincasa hispida])

HSP 1 Score: 386.3 bits (991), Expect = 1.9e-103
Identity = 197/239 (82.43%), Postives = 214/239 (89.54%), Query Frame = 0


Query: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60
           MELLP NL++L   ETR+DS+VSEF KD+STEF+ P+ SSS+GTHMTDSVPSDWTDEKHH
Sbjct: 1   MELLPRNLENLKAVETRSDSIVSEFAKDESTEFALPVVSSSQGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120
           LFLESMEASFVSQMFDS HSVGSCP+K+NSSR KLL +SQSASH HS FGQFKVLRRGSW
Sbjct: 61  LFLESMEASFVSQMFDSVHSVGSCPSKENSSRAKLLGQSQSASHVHSHFGQFKVLRRGSW 120

Query: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180
           KNINFEPTESRSN LN+YQALSHNPWIHHFRAARKNKNV CKSQ+IGSRGRNSL  GAAN
Sbjct: 121 KNINFEPTESRSNLLNDYQALSHNPWIHHFRAARKNKNVACKSQSIGSRGRNSLPFGAAN 180

Query: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASETNALINDQ 240
           NSG +RASDSDLSQQ+IS+NKEVSDQNFVDE  E EKGS DCNAKR    +TNALINDQ
Sbjct: 181 NSGSMRASDSDLSQQFISSNKEVSDQNFVDE--EAEKGSSDCNAKRVKTPQTNALINDQ 237

[Close]

BLAST of CsaV3_4G034340 vs. ExPASy Swiss-Prot
Match: Q8L8T7 (Cold-regulated protein 27 OS=Arabidopsis thaliana OX=3702 GN=COR27 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.0e-12
Identity = 65/202 (32.18%), Postives = 104/202 (51.49%), Query Frame = 0


Query: 28  DQSTEFSRPIE---SSSRGTHMTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSC 87
           D S++ +  +E   +SS  +   + + ++WT+EKH L+L+SMEASFV Q++   +S+G+ 
Sbjct: 19  DDSSDDASSVEGETTSSMYSAGKEYMETEWTNEKHSLYLKSMEASFVDQLY---NSLGAL 78

Query: 88  PTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSWKNINFEPTESRSNFL---NEYQAL 147
              +N S +      +  S       QFKVL  G W+ IN +  E R N     N ++ L
Sbjct: 79  GKNENVSESTRFGSGRKPSQ-----EQFKVLHDGFWQKINVKQPEHRINGRHGGNSHEFL 138

Query: 148 SHNPWIHHFRAARKNKNVVC---KSQAI-GSRGRNSLSLGAANNSGPIRASDSDLSQQYI 207
             +PWI H++   K +  V    ++Q +  S G+  +    + +S    +S S    Q  
Sbjct: 139 -RSPWIKHYKPLVKTQIPVTDEPENQVVSSSNGKKGICSSGSASSLKQLSSHSRDHDQIS 198

Query: 208 SNNKEVSDQNFVDEVIEVEKGS 220
               EVSDQNFV+E I+ E GS
Sbjct: 199 VGEAEVSDQNFVNEGIKGENGS 211

[Close]

BLAST of CsaV3_4G034340 vs. ExPASy Swiss-Prot
Match: Q8L983 (Cold-regulated protein 28 OS=Arabidopsis thaliana OX=3702 GN=COR28 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.0e-04
Identity = 47/187 (25.13%), Postives = 80/187 (42.78%), Query Frame = 0


Query: 54  WTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSA-SHGHSQFGQF 113
           WT+EKH+ +L+ +E+SFV Q++                 T+ LS+++   S+ H    QF
Sbjct: 58  WTNEKHNSYLDYLESSFVRQLYSL-----------LGGGTQRLSRTRDVQSNSHKSADQF 117

Query: 114 KVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRN 173
            VL+ G W+ +NF   +S     +E++        H      K +N         S G  
Sbjct: 118 TVLQNGCWQKVNFGKKQSCLETSSEFR-------FHRNSLRNKPEN---------SNGNY 177

Query: 174 SLSLGAANNSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASET 233
           ++        G +   D        + + E S QNF +E  E EKG +    +R   ++ 
Sbjct: 178 TM---GTTVQGDVLCHDE-------TKHSEASGQNFREEEEEEEKGEVSKKREREANNDD 207

Query: 234 NALINDQ 240
           ++L  DQ
Sbjct: 238 SSLKEDQ 207

[Close]

BLAST of CsaV3_4G034340 vs. ExPASy TrEMBL
Match: A0A0A0L0A2 (Polyketide_cyc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639810 PE=3 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.1e-128
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60
           MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH
Sbjct: 77  MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 136

Query: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120
           LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW
Sbjct: 137 LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 196

Query: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180
           KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN
Sbjct: 197 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 256

Query: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASETNALINDQ 240
           NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASETNALINDQ
Sbjct: 257 NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASETNALINDQ 315

[Close]

BLAST of CsaV3_4G034340 vs. ExPASy TrEMBL
Match: A0A1S3BU49 (uncharacterized protein LOC103493542 OS=Cucumis melo OX=3656 GN=LOC103493542 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 8.6e-110
Identity = 207/224 (92.41%), Postives = 214/224 (95.54%), Query Frame = 0


Query: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60
           MELLP NLD+LN RE R+DSLVSEFVKD STEF RPIESSSRGTHMTDSVPSDWTDEKHH
Sbjct: 1   MELLPRNLDNLNSREARSDSLVSEFVKDGSTEFCRPIESSSRGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120
           LFLESMEASFVSQMFDSGHSVGSCP+KDNSSRTKLLSKSQSASH HS FGQFKVLRRGSW
Sbjct: 61  LFLESMEASFVSQMFDSGHSVGSCPSKDNSSRTKLLSKSQSASHVHSHFGQFKVLRRGSW 120

Query: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180
           KNINFEPTESRSNFLNEYQALSHNPWIHHF+AARKNKNV CKSQAIGSRGRNSLSL AAN
Sbjct: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFKAARKNKNVACKSQAIGSRGRNSLSLEAAN 180

Query: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNA 225
           NSGPIRAS+SDLSQQYIS+NKEVSDQNFVDEV+EVEKGS DCNA
Sbjct: 181 NSGPIRASNSDLSQQYISSNKEVSDQNFVDEVVEVEKGSRDCNA 224

[Close]

BLAST of CsaV3_4G034340 vs. ExPASy TrEMBL
Match: A0A6J1FBV0 (uncharacterized protein LOC111442637 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442637 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.5e-98
Identity = 192/244 (78.69%), Postives = 207/244 (84.84%), Query Frame = 0


Query: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60
           MELLPPNL++ N  ETR DSL+SE  KD+STEF+ P+ESSS GTHMTDSVPSDWTDEKHH
Sbjct: 1   MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120
           LFLESME SFVSQMFDS HSVGSCP K+NSS TKL  +SQSASH HS FGQFKVLRRGSW
Sbjct: 61  LFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSASHVHSHFGQFKVLRRGSW 120

Query: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180
           KNINFE TESRSN LN++QALS NPWIHHFRA RKNKNV CKSQAIGS GRN   LGAAN
Sbjct: 121 KNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAAN 180

Query: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDC-NAKRANASETNALINDQ 240
           +S P+RA DSDLS QYIS+N+EVSDQNFVDE  EV  GS DC NAKR N  ETNALIN+Q
Sbjct: 181 DSEPLRACDSDLSLQYISSNEEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ 240

Query: 241 PEDS 244
           PEDS
Sbjct: 241 PEDS 244

[Close]

BLAST of CsaV3_4G034340 vs. ExPASy TrEMBL
Match: A0A6J1IM11 (uncharacterized protein LOC111476815 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476815 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.7e-97
Identity = 189/243 (77.78%), Postives = 203/243 (83.54%), Query Frame = 0


Query: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60
           MELLPPNL++    ETR D L+SE  KD STEF+ P+ESSS GTHMTDSVPSDWTDEKHH
Sbjct: 1   MELLPPNLENHIAVETRTDLLISELPKDDSTEFALPVESSSLGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120
           LFLESME SFVSQMFDS HSVGSCP K+NSS TKL  +SQSASH H+ FGQFKVLRRGSW
Sbjct: 61  LFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSASHVHAHFGQFKVLRRGSW 120

Query: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180
           KNINFE TESRSN LN++QALS NPWIHHFRA RKNKNV CKSQAIGS GRN   LGAAN
Sbjct: 121 KNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAAN 180

Query: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASETNALINDQP 240
           NS P+RA  SDLS QYIS+N+EVSDQNFVDE  EV  GS DCNAKR N  ETNALIN+QP
Sbjct: 181 NSEPLRACGSDLSLQYISSNEEVSDQNFVDEDREVGNGSSDCNAKRVNTPETNALINEQP 240

Query: 241 EDS 244
           EDS
Sbjct: 241 EDS 243

[Close]

BLAST of CsaV3_4G034340 vs. ExPASy TrEMBL
Match: A0A6J1F6L8 (uncharacterized protein LOC111442637 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442637 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 4.1e-96
Identity = 188/240 (78.33%), Postives = 203/240 (84.58%), Query Frame = 0


Query: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60
           MELLPPNL++ N  ETR DSL+SE  KD+STEF+ P+ESSS GTHMTDSVPSDWTDEKHH
Sbjct: 1   MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120
           LFLESME SFVSQMFDS HSVGSCP K+NSS TKL  +SQSASH HS FGQFKVLRRGSW
Sbjct: 61  LFLESMETSFVSQMFDSVHSVGSCPRKENSSHTKLHGQSQSASHVHSHFGQFKVLRRGSW 120

Query: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180
           KNINFE TESRSN LN++QALS NPWIHHFRA RKNKNV CKSQAIGS GRN   LGAAN
Sbjct: 121 KNINFETTESRSNLLNDFQALSRNPWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAAN 180

Query: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDC-NAKRANASETNALINDQ 240
           +S P+RA DSDLS QYIS+N+EVSDQNFVDE  EV  GS DC NAKR N  ETNALIN+Q
Sbjct: 181 DSEPLRACDSDLSLQYISSNEEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ 240

[Close]

BLAST of CsaV3_4G034340 vs. TAIR 10
Match: AT5G42900.3 (cold regulated gene 27 )

HSP 1 Score: 75.1 bits (183), Expect = 8.7e-14
Identity = 68/203 (33.50%), Postives = 110/203 (54.19%), Query Frame = 0


Query: 28  DQSTEFSRPIE---SSSRGTHMTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSC 87
           D S++ +  +E   +SS  +   + + ++WT+EKH L+L+SMEASFV Q++   +S+G+ 
Sbjct: 19  DDSSDDASSVEGETTSSMYSAGKEYMETEWTNEKHSLYLKSMEASFVDQLY---NSLGAL 78

Query: 88  PTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSWKNINFEPTESRSNFL---NEYQAL 147
              +N S +      +  S       QFKVL  G W+ IN +  E R N     N ++ L
Sbjct: 79  GKNENVSESTRFGSGRKPSQ-----EQFKVLHDGFWQKINVKQPEHRINGRHGGNSHEFL 138

Query: 148 SHNPWIHHFRAARKNKNVVC---KSQAI-GSRGRNSL-SLGAANNSGPIRASDSDLSQQY 207
             +PWI H++   K +  V    ++Q +  S G+  + S G+A++   + +   D  Q  
Sbjct: 139 -RSPWIKHYKPLVKTQIPVTDEPENQVVSSSNGKKGICSSGSASSLKQLSSHSRDHDQ-- 198

Query: 208 ISNNKEVSDQNFVDEVIEVEKGS 220
           IS  +EVSDQNFV+E I+ E GS
Sbjct: 199 ISVGEEVSDQNFVNEGIKGENGS 210

[Close]

BLAST of CsaV3_4G034340 vs. TAIR 10
Match: AT5G42900.1 (cold regulated gene 27 )

HSP 1 Score: 72.4 bits (176), Expect = 5.7e-13
Identity = 65/202 (32.18%), Postives = 104/202 (51.49%), Query Frame = 0


Query: 28  DQSTEFSRPIE---SSSRGTHMTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSC 87
           D S++ +  +E   +SS  +   + + ++WT+EKH L+L+SMEASFV Q++   +S+G+ 
Sbjct: 19  DDSSDDASSVEGETTSSMYSAGKEYMETEWTNEKHSLYLKSMEASFVDQLY---NSLGAL 78

Query: 88  PTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSWKNINFEPTESRSNFL---NEYQAL 147
              +N S +      +  S       QFKVL  G W+ IN +  E R N     N ++ L
Sbjct: 79  GKNENVSESTRFGSGRKPSQ-----EQFKVLHDGFWQKINVKQPEHRINGRHGGNSHEFL 138

Query: 148 SHNPWIHHFRAARKNKNVVC---KSQAI-GSRGRNSLSLGAANNSGPIRASDSDLSQQYI 207
             +PWI H++   K +  V    ++Q +  S G+  +    + +S    +S S    Q  
Sbjct: 139 -RSPWIKHYKPLVKTQIPVTDEPENQVVSSSNGKKGICSSGSASSLKQLSSHSRDHDQIS 198

Query: 208 SNNKEVSDQNFVDEVIEVEKGS 220
               EVSDQNFV+E I+ E GS
Sbjct: 199 VGEAEVSDQNFVNEGIKGENGS 211

[Close]

BLAST of CsaV3_4G034340 vs. TAIR 10
Match: AT5G42900.2 (cold regulated gene 27 )

HSP 1 Score: 72.4 bits (176), Expect = 5.7e-13
Identity = 65/202 (32.18%), Postives = 104/202 (51.49%), Query Frame = 0


Query: 28  DQSTEFSRPIE---SSSRGTHMTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSC 87
           D S++ +  +E   +SS  +   + + ++WT+EKH L+L+SMEASFV Q++   +S+G+ 
Sbjct: 19  DDSSDDASSVEGETTSSMYSAGKEYMETEWTNEKHSLYLKSMEASFVDQLY---NSLGAL 78

Query: 88  PTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSWKNINFEPTESRSNFL---NEYQAL 147
              +N S +      +  S       QFKVL  G W+ IN +  E R N     N ++ L
Sbjct: 79  GKNENVSESTRFGSGRKPSQ-----EQFKVLHDGFWQKINVKQPEHRINGRHGGNSHEFL 138

Query: 148 SHNPWIHHFRAARKNKNVVC---KSQAI-GSRGRNSLSLGAANNSGPIRASDSDLSQQYI 207
             +PWI H++   K +  V    ++Q +  S G+  +    + +S    +S S    Q  
Sbjct: 139 -RSPWIKHYKPLVKTQIPVTDEPENQVVSSSNGKKGICSSGSASSLKQLSSHSRDHDQIS 198

Query: 208 SNNKEVSDQNFVDEVIEVEKGS 220
               EVSDQNFV+E I+ E GS
Sbjct: 199 VGEAEVSDQNFVNEGIKGENGS 211

[Close]

BLAST of CsaV3_4G034340 vs. TAIR 10
Match: AT4G33980.1 (BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 5.7e-05
Identity = 47/187 (25.13%), Postives = 80/187 (42.78%), Query Frame = 0


Query: 54  WTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSA-SHGHSQFGQF 113
           WT+EKH+ +L+ +E+SFV Q++                 T+ LS+++   S+ H    QF
Sbjct: 58  WTNEKHNSYLDYLESSFVRQLYSL-----------LGGGTQRLSRTRDVQSNSHKSADQF 117

Query: 114 KVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRN 173
            VL+ G W+ +NF   +S     +E++        H      K +N         S G  
Sbjct: 118 TVLQNGCWQKVNFGKKQSCLETSSEFR-------FHRNSLRNKPEN---------SNGNY 177

Query: 174 SLSLGAANNSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASET 233
           ++        G +   D        + + E S QNF +E  E EKG +    +R   ++ 
Sbjct: 178 TM---GTTVQGDVLCHDE-------TKHSEASGQNFREEEEEEEKGEVSKKREREANNDD 207

Query: 234 NALINDQ 240
           ++L  DQ
Sbjct: 238 SSLKEDQ 207

[Close]

BLAST of CsaV3_4G034340 vs. TAIR 10
Match: AT4G33980.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.3). )

HSP 1 Score: 45.8 bits (107), Expect = 5.7e-05
Identity = 47/187 (25.13%), Postives = 80/187 (42.78%), Query Frame = 0


Query: 54  WTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSA-SHGHSQFGQF 113
           WT+EKH+ +L+ +E+SFV Q++                 T+ LS+++   S+ H    QF
Sbjct: 58  WTNEKHNSYLDYLESSFVRQLYSL-----------LGGGTQRLSRTRDVQSNSHKSADQF 117

Query: 114 KVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRN 173
            VL+ G W+ +NF   +S     +E++        H      K +N         S G  
Sbjct: 118 TVLQNGCWQKVNFGKKQSCLETSSEFR-------FHRNSLRNKPEN---------SNGNY 177

Query: 174 SLSLGAANNSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASET 233
           ++        G +   D        + + E S QNF +E  E EKG +    +R   ++ 
Sbjct: 178 TM---GTTVQGDVLCHDE-------TKHSEASGQNFREEEEEEEKGEVSKKREREANNDD 207

Query: 234 NALINDQ 240
           ++L  DQ
Sbjct: 238 SSLKEDQ 207

The following BLAST results are available for this feature:

BLAST of CsaV3_4G034340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649861.1	8.2e-131	100.00	hypothetical protein Csa_012756 [Cucumis sativus]	[more]
XP_011654107.2	2.2e-128	100.00	cold-regulated protein 27 [Cucumis sativus]	[more]
XP_008452552.1	1.8e-109	92.41	PREDICTED: uncharacterized protein LOC103493542 [Cucumis melo] >XP_008452553.1 P...	[more]
XP_038896200.1	7.0e-106	82.72	cold-regulated protein 27 isoform X3 [Benincasa hispida]	[more]
XP_038896198.1	1.9e-103	82.43	cold-regulated protein 27 isoform X1 [Benincasa hispida]	[more]

BLAST of CsaV3_4G034340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8T7	8.0e-12	32.18	Cold-regulated protein 27 OS=Arabidopsis thaliana OX=3702 GN=COR27 PE=1 SV=1	[more]
Q8L983	8.0e-04	25.13	Cold-regulated protein 28 OS=Arabidopsis thaliana OX=3702 GN=COR28 PE=1 SV=1	[more]

BLAST of CsaV3_4G034340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0A2	1.1e-128	100.00	Polyketide_cyc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639...	[more]
A0A1S3BU49	8.6e-110	92.41	uncharacterized protein LOC103493542 OS=Cucumis melo OX=3656 GN=LOC103493542 PE=...	[more]
A0A6J1FBV0	1.5e-98	78.69	uncharacterized protein LOC111442637 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IM11	3.7e-97	77.78	uncharacterized protein LOC111476815 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1F6L8	4.1e-96	78.33	uncharacterized protein LOC111442637 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CsaV3_4G034340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42900.3	8.7e-14	33.50	cold regulated gene 27	[more]
AT5G42900.1	5.7e-13	32.18	cold regulated gene 27	[more]
AT5G42900.2	5.7e-13	32.18	cold regulated gene 27	[more]
AT4G33980.1	5.7e-05	25.13	BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G429...	[more]
AT4G33980.2	5.7e-05	25.13	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOC...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..108
None	No IPR available	PANTHER	PTHR33676:SF3	COLD REGULATED PROTEIN 27	coord: 23..239
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 23..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G034340.1	CsaV3_4G034340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold