CsaV3_4G032920 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTCGCTTCAGACCTCTTCACTCTCAAATCCAACTCTTCAATTCACAATCCACAATTTCCCTTCAATTTCACCTTCTTCCTTCTACTTCTCGATCTTTCTCACTGAATATTGGAGAGCGGATCGCACCAGAAATTGTCCCCGGTAACAGGAATACACCGCCGCCGTTTCTGTGTAGGGAAGCCGCGAATTCGGACGGAAGTGTAAAATCTCAAGAAGGGAAAGGTAGGAATGAAGAGACTGTGCTGAAAGGAAAAGTGGGTTCTGAAGGAAACAAGAAATTGACGAGGGAGGATGCTTTGCTCCGCAAACAGCTTTCTCCGGATATGGAGATGTTTGTGAGACATTTGTACCAGGAAGGATATTTTAACTATGCTAATTTCTTGCCCGATAACAAATTTGTTCTTAGTTACTTTGAGTGTCGTCATGGACGGGATTTTATCAAGTCTGCAGCTCAGCGGTTTGGCAGAGACAATCAAGAAATTGCAAAGTAAGAAGAGTTTTGATTTTAGATTTTTAAATGTGGTATCTCTTTTGCGTTTTCGTTTTTATGTAATTTTTTGAGAATTGGTGTGAGATCATCATGTCTGATGAAGTGGATAGCTTTAATCTTTTGCTAATGACGATTTCATTTATAGAGTATGAAGTGCTGTGAGATTTGGATATATTGTGTGTGGAAGAATGGAACAAGGAAAATTATTTTTGTTTTTTACTTTGAATCAGTTCCATGATTTGGCTTGTGTATTGACATGGGGAAACTATACTTAATTCTAGTATTGAGGTTTTTCAAAACATGCTCTATGCATTTTGCGGTGGTAATTAAGACAAAGAAGAAATTGAGGTCATTCTCTGTTGGGGTTAGATTACTCTAACTAACTACATTTAGTATCATAAATGTAAAAATGATAGTTTGGATCATTTTTAGATGCATTAATTTTTTTAATAGGAGTTTTCATTTTCGAAGCATTAGTTTCATATTATGGGTATGAAAGCTATGAAAAGATATTCTTTTTCACTTTTGAAAGGACTATGGTCAAAGTTGGAAGTTTGATTTTCCATAACTCAAATATTAGAATATCTGCTGCTATTATTCCCTAACAAGTTGTTTTTGCTTGGCTCGATTGGTTCATCTTTCAAAAGTAATTGTACAGGTCGGTTTTGTGTTGATATTCAACTTAGTGAGCAATTTTAATGGTTCCATCTCCCACCCCTATCATTGTTGAACTAAAAAAGATATCCATTTACCAACCCATATTGTTTAATTAGTTTTAGCATTAGTAACCCTTGACTAAATAGTTATCCATCTAAGACATAACTGACCTAAACCGACCTATCTTGGTCTTCAATTTACTCTTTCCTAGCTAATCTCTCTGCTTTTCATTTTTCTATCTGCTGCTTGATAATTGCTTGAATCCTTCTGGGACTGATAATTTCAAGATTGTACAAGACATTAATGTGTCAGATTTTTAAGTGTAGTGAACATAAAAGTGTAATATTCCTAATAAGTTACAAAATCTAACATTCTGATTCCAAAAGAAATAATTTTTTGTACTTCATCTTTGTGGTTGTGGCAGTTGTGTTTCTTTATGAAGATGCCCCTATTGTTTCACGTCTTGAATTCTGAGTCTTGGGATTTTCAGATGGTTGTCTGGCAGTGACTTGAGAAAGGTTGCCTTCTTTGGATGTCCATCCACTGCAAGAAAAGATGTTTTTGCGGCTAAAAGATTGCGAAAATTCTTTAGAATCCAAGAAGACACAGTAAGAAAAACCAATATTACCTTGTTCCTTCCATTACCAACTAATTTTTAGTAGAATTCTTTGGCTTATTTTCTTCCTCTTCAAATTATCTGCAGGTCTGTCACAAATGCATCTTGAGACAATCATGCAAGTACGTCAATCAAGGTGTTTGGAATGAGGACACCAAGAATTTGAATTTAGGGGTTGTTTTGCAAGTTACTACTCAATACGCCTTAGAAGCTATACCAGAACAACTTATAATACCTGAAGATGTAAAGGCTTCCGTAAGTCGATTGCTGAAAGAGATATTAAACCTAAGTCCGACCGTGTCGAGGAACTAG ATGTCTCGCTTCAGACCTCTTCACTCTCAAATCCAACTCTTCAATTCACAATCCACAATTTCCCTTCAATTTCACCTTCTTCCTTCTACTTCTCGATCTTTCTCACTGAATATTGGAGAGCGGATCGCACCAGAAATTGTCCCCGGTAACAGGAATACACCGCCGCCGTTTCTGTGTAGGGAAGCCGCGAATTCGGACGGAAGTGTAAAATCTCAAGAAGGGAAAGGTAGGAATGAAGAGACTGTGCTGAAAGGAAAAGTGGGTTCTGAAGGAAACAAGAAATTGACGAGGGAGGATGCTTTGCTCCGCAAACAGCTTTCTCCGGATATGGAGATGTTTGTGAGACATTTGTACCAGGAAGGATATTTTAACTATGCTAATTTCTTGCCCGATAACAAATTTGTTCTTAGTTACTTTGAGTGTCGTCATGGACGGGATTTTATCAAGTCTGCAGCTCAGCGGTTTGGCAGAGACAATCAAGAAATTGCAAAATGGTTGTCTGGCAGTGACTTGAGAAAGGTTGCCTTCTTTGGATGTCCATCCACTGCAAGAAAAGATGTTTTTGCGGCTAAAAGATTGCGAAAATTCTTTAGAATCCAAGAAGACACAGTCTGTCACAAATGCATCTTGAGACAATCATGCAAGTACGTCAATCAAGGTGTTTGGAATGAGGACACCAAGAATTTGAATTTAGGGGTTGTTTTGCAAGTTACTACTCAATACGCCTTAGAAGCTATACCAGAACAACTTATAATACCTGAAGATGTAAAGGCTTCCGTAAGTCGATTGCTGAAAGAGATATTAAACCTAAGTCCGACCGTGTCGAGGAACTAG ATGTCTCGCTTCAGACCTCTTCACTCTCAAATCCAACTCTTCAATTCACAATCCACAATTTCCCTTCAATTTCACCTTCTTCCTTCTACTTCTCGATCTTTCTCACTGAATATTGGAGAGCGGATCGCACCAGAAATTGTCCCCGGTAACAGGAATACACCGCCGCCGTTTCTGTGTAGGGAAGCCGCGAATTCGGACGGAAGTGTAAAATCTCAAGAAGGGAAAGGTAGGAATGAAGAGACTGTGCTGAAAGGAAAAGTGGGTTCTGAAGGAAACAAGAAATTGACGAGGGAGGATGCTTTGCTCCGCAAACAGCTTTCTCCGGATATGGAGATGTTTGTGAGACATTTGTACCAGGAAGGATATTTTAACTATGCTAATTTCTTGCCCGATAACAAATTTGTTCTTAGTTACTTTGAGTGTCGTCATGGACGGGATTTTATCAAGTCTGCAGCTCAGCGGTTTGGCAGAGACAATCAAGAAATTGCAAAATGGTTGTCTGGCAGTGACTTGAGAAAGGTTGCCTTCTTTGGATGTCCATCCACTGCAAGAAAAGATGTTTTTGCGGCTAAAAGATTGCGAAAATTCTTTAGAATCCAAGAAGACACAGTCTGTCACAAATGCATCTTGAGACAATCATGCAAGTACGTCAATCAAGGTGTTTGGAATGAGGACACCAAGAATTTGAATTTAGGGGTTGTTTTGCAAGTTACTACTCAATACGCCTTAGAAGCTATACCAGAACAACTTATAATACCTGAAGATGTAAAGGCTTCCGTAAGTCGATTGCTGAAAGAGATATTAAACCTAAGTCCGACCGTGTCGAGGAACTAG MSRFRPLHSQIQLFNSQSTISLQFHLLPSTSRSFSLNIGERIAPEIVPGNRNTPPPFLCREAANSDGSVKSQEGKGRNEETVLKGKVGSEGNKKLTREDALLRKQLSPDMEMFVRHLYQEGYFNYANFLPDNKFVLSYFECRHGRDFIKSAAQRFGRDNQEIAKWLSGSDLRKVAFFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVTTQYALEAIPEQLIIPEDVKASVSRLLKEILNLSPTVSRN* Homology
BLAST of CsaV3_4G032920 vs. NCBI nr
Match: XP_004146085.1 (uncharacterized protein LOC101222492 [Cucumis sativus] >KGN55046.1 hypothetical protein Csa_012594 [Cucumis sativus]) HSP 1 Score: 553.9 bits (1426), Expect = 7.8e-154 Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0
BLAST of CsaV3_4G032920 vs. NCBI nr
Match: KAA0066744.1 (uncharacterized protein E6C27_scaffold271G00820 [Cucumis melo var. makuwa] >TYK27892.1 uncharacterized protein E5676_scaffold384G00760 [Cucumis melo var. makuwa]) HSP 1 Score: 496.5 bits (1277), Expect = 1.5e-136 Identity = 252/277 (90.97%), Postives = 258/277 (93.14%), Query Frame = 0
BLAST of CsaV3_4G032920 vs. NCBI nr
Match: XP_038898284.1 (uncharacterized protein LOC120085986 [Benincasa hispida]) HSP 1 Score: 466.8 bits (1200), Expect = 1.3e-127 Identity = 236/285 (82.81%), Postives = 258/285 (90.53%), Query Frame = 0
BLAST of CsaV3_4G032920 vs. NCBI nr
Match: KAG6591767.1 (hypothetical protein SDJN03_14113, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 400.2 bits (1027), Expect = 1.4e-107 Identity = 212/286 (74.13%), Postives = 230/286 (80.42%), Query Frame = 0
BLAST of CsaV3_4G032920 vs. NCBI nr
Match: KAG7024649.1 (hypothetical protein SDJN02_13467, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 400.2 bits (1027), Expect = 1.4e-107 Identity = 212/286 (74.13%), Postives = 230/286 (80.42%), Query Frame = 0
BLAST of CsaV3_4G032920 vs. ExPASy TrEMBL
Match: A0A0A0L4J9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625010 PE=4 SV=1) HSP 1 Score: 553.9 bits (1426), Expect = 3.8e-154 Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0
BLAST of CsaV3_4G032920 vs. ExPASy TrEMBL
Match: A0A5A7VHD0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00760 PE=4 SV=1) HSP 1 Score: 496.5 bits (1277), Expect = 7.2e-137 Identity = 252/277 (90.97%), Postives = 258/277 (93.14%), Query Frame = 0
BLAST of CsaV3_4G032920 vs. ExPASy TrEMBL
Match: A0A6J1F747 (uncharacterized protein LOC111442720 OS=Cucurbita moschata OX=3662 GN=LOC111442720 PE=4 SV=1) HSP 1 Score: 397.1 bits (1019), Expect = 5.9e-107 Identity = 211/286 (73.78%), Postives = 230/286 (80.42%), Query Frame = 0
BLAST of CsaV3_4G032920 vs. ExPASy TrEMBL
Match: A0A6J1IGS8 (uncharacterized protein LOC111477088 OS=Cucurbita maxima OX=3661 GN=LOC111477088 PE=4 SV=1) HSP 1 Score: 389.8 bits (1000), Expect = 9.5e-105 Identity = 207/286 (72.38%), Postives = 228/286 (79.72%), Query Frame = 0
BLAST of CsaV3_4G032920 vs. ExPASy TrEMBL
Match: A0A1S3CK23 (uncharacterized protein LOC103501830 OS=Cucumis melo OX=3656 GN=LOC103501830 PE=4 SV=1) HSP 1 Score: 278.9 bits (712), Expect = 2.4e-71 Identity = 143/167 (85.63%), Postives = 149/167 (89.22%), Query Frame = 0
BLAST of CsaV3_4G032920 vs. TAIR 10
Match: AT1G53460.1 (BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2); Has 485 Blast hits to 413 proteins in 88 species: Archae - 11; Bacteria - 27; Metazoa - 119; Fungi - 17; Plants - 101; Viruses - 2; Other Eukaryotes - 208 (source: NCBI BLink). ) HSP 1 Score: 187.2 bits (474), Expect = 1.8e-47 Identity = 97/208 (46.63%), Postives = 135/208 (64.90%), Query Frame = 0
BLAST of CsaV3_4G032920 vs. TAIR 10
Match: AT1G55040.1 (zinc finger (Ran-binding) family protein ) HSP 1 Score: 67.0 bits (162), Expect = 2.7e-11 Identity = 42/130 (32.31%), Postives = 70/130 (53.85%), Query Frame = 0
BLAST of CsaV3_4G032920 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein ) HSP 1 Score: 59.3 bits (142), Expect = 5.6e-09 Identity = 50/162 (30.86%), Postives = 81/162 (50.00%), Query Frame = 0
BLAST of CsaV3_4G032920 vs. TAIR 10
Match: AT1G70650.2 (Ran BP2/NZF zinc finger-like superfamily protein ) HSP 1 Score: 59.3 bits (142), Expect = 5.6e-09 Identity = 50/162 (30.86%), Postives = 81/162 (50.00%), Query Frame = 0
BLAST of CsaV3_4G032920 vs. TAIR 10
Match: AT1G48570.1 (zinc finger (Ran-binding) family protein ) HSP 1 Score: 57.8 bits (138), Expect = 1.6e-08 Identity = 51/170 (30.00%), Postives = 79/170 (46.47%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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