CsaV3_4G032230 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G032230
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	ankyrin repeat and zinc finger domain-containing protein 1
Location	chr4: 22779448 .. 22780374 (-)
RNA-Seq Expression	CsaV3_4G032230
Synteny	CsaV3_4G032230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTACCTTTACGTGACAATTATTTGTTGTCATAAAATTTAAAAGTATTAAAAATTTATTCATTAAAATAAAACTTATAAAATATCCTAAAAAACGTGAAACCTCACGCCCTTTCTCTAAATCGTTTTCCTCTTTGAACCTCACTTTGCCGACTAATCCATTAGATTCGAACAGTCACACTCGACCTCTCCAAATGCCAGCGACTACTCCAAATGTTTCTCGAGGAAATCAACCTAAGGCCATGGAGACCAATCCCACCGCCTCCGTCGTCGTTGGCGACAATACTCCAGCCACCCTATCAAAGAAACGTAACCGTTCTATCTTTGACGTTTCAGCTGACTTCTTTGATTTCTGCAAACTCCTTCGTTCTCCACACTCATACACATCACAACCTAGTGGCAACATCAGGGACATCCCAAGCGTTGAAAACACAATCGATTCGGAGCAAAACTCTAGAGATTTCAAAGAAAGTTTCGTCGCCCATCGGTGGATCTACAACATATGCAAGGCTGAATTAAAGTCCCTCCTTGACCAGGGTTCGCATTTCAAATCCGACATTCACTGATATAATATAACTTTTTTTCTTGTTGATTTTGTTATCTGATATTTGAATTTCAGTTTTTTTTTTTTTCTTTTTTGCCCCAATTTAACTAGCTGACTGAGTATAATGTCTCAGTTATTGAATTATCATGTCAAGCGTCCATTTTTGTTTAAATGTTTATAGACATCAAAGTTGAAATTTAGTTGTTGACATGCTTTTGATGAACTGAATGGTTTCTTAATTTTTATGTTCTATGTGAAAGATGTATGAGAAAAGATGGAGAGAGTTAGACACATTATATGTGCTCTAGAGAAGTGTTATAGTCTATTCCCTCTTATATTATATAATCAATTAATTTAAGAAATTATGTTTATCTTTTGCATTGAT

mRNA sequence

ATGCCAGCGACTACTCCAAATGTTTCTCGAGGAAATCAACCTAAGGCCATGGAGACCAATCCCACCGCCTCCGTCGTCGTTGGCGACAATACTCCAGCCACCCTATCAAAGAAACGTAACCGTTCTATCTTTGACGTTTCAGCTGACTTCTTTGATTTCTGCAAACTCCTTCGTTCTCCACACTCATACACATCACAACCTAGTGGCAACATCAGGGACATCCCAAGCGTTGAAAACACAATCGATTCGGAGCAAAACTCTAGAGATTTCAAAGAAAGTTTCGTCGCCCATCGGTGGATCTACAACATATGCAAGGCTGAATTAAAGTCCCTCCTTGACCAGGGTTCGCATTTCAAATCCGACATTCACTGA

Coding sequence (CDS)

ATGCCAGCGACTACTCCAAATGTTTCTCGAGGAAATCAACCTAAGGCCATGGAGACCAATCCCACCGCCTCCGTCGTCGTTGGCGACAATACTCCAGCCACCCTATCAAAGAAACGTAACCGTTCTATCTTTGACGTTTCAGCTGACTTCTTTGATTTCTGCAAACTCCTTCGTTCTCCACACTCATACACATCACAACCTAGTGGCAACATCAGGGACATCCCAAGCGTTGAAAACACAATCGATTCGGAGCAAAACTCTAGAGATTTCAAAGAAAGTTTCGTCGCCCATCGGTGGATCTACAACATATGCAAGGCTGAATTAAAGTCCCTCCTTGACCAGGGTTCGCATTTCAAATCCGACATTCACTGA

Protein sequence

MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH*

Homology

[Close]

BLAST of CsaV3_4G032230 vs. NCBI nr
Match: KGN54969.1 (hypothetical protein Csa_012656 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 1.7e-63
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60
           MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP
Sbjct: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60

Query: 61  HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120
           HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS
Sbjct: 61  HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120

Query: 121 DIH 124
           DIH
Sbjct: 121 DIH 123

[Close]

BLAST of CsaV3_4G032230 vs. NCBI nr
Match: XP_008438141.1 (PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 1.9e-38
Identity = 83/107 (77.57%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPS 76
           METNP AS V+  NTPA   +KRNRSIFDV ADFFD CKLLRSPHSYTS  SG+ RD PS
Sbjct: 1   METNPAASAVIVSNTPAIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDSPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            ENT+DSEQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AENTVDSEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CsaV3_4G032230 vs. NCBI nr
Match: KAA0049021.1 (ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 1.9e-38
Identity = 83/107 (77.57%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPS 76
           METNP AS V+  NTPA   +KRNRSIFDV ADFFD CKLLRSPHSYTS  SG+ RD PS
Sbjct: 1   METNPAASAVIVSNTPAIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDSPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            ENT+DSEQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AENTVDSEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CsaV3_4G032230 vs. NCBI nr
Match: TYK17543.1 (ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 1.9e-38
Identity = 83/107 (77.57%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPS 76
           METNP AS V+  NTPA   +KRNRSIFDV ADFFD CKLLRSPHSYTS  SG+ RD PS
Sbjct: 1   METNPAASAVIVSNTPAIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDSPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            ENT+DSEQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AENTVDSEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CsaV3_4G032230 vs. NCBI nr
Match: XP_011650787.1 (ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis sativus] >XP_031739200.1 ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis sativus] >XP_031739201.1 ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis sativus] >KGN56582.1 hypothetical protein Csa_009543 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 3.3e-35
Identity = 80/107 (74.77%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPS 76
           MET P AS VV  NTP    +KRNRSIFDV ADFFD CKLLRSPHSYTS  SG+ RD PS
Sbjct: 1   METIPAASAVVVSNTPPIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDGPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
             NT+D EQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AVNTVDLEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CsaV3_4G032230 vs. ExPASy TrEMBL
Match: A0A0A0L1Q2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G617360 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.1e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60
           MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP
Sbjct: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60

Query: 61  HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120
           HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS
Sbjct: 61  HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120

Query: 121 DIH 124
           DIH
Sbjct: 121 DIH 123

[Close]

BLAST of CsaV3_4G032230 vs. ExPASy TrEMBL
Match: A0A5A7U602 (Ankyrin repeat and zinc finger domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G002470 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 9.0e-39
Identity = 83/107 (77.57%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPS 76
           METNP AS V+  NTPA   +KRNRSIFDV ADFFD CKLLRSPHSYTS  SG+ RD PS
Sbjct: 1   METNPAASAVIVSNTPAIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDSPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            ENT+DSEQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AENTVDSEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CsaV3_4G032230 vs. ExPASy TrEMBL
Match: A0A5D3D037 (Ankyrin repeat and zinc finger domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004120 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 9.0e-39
Identity = 83/107 (77.57%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPS 76
           METNP AS V+  NTPA   +KRNRSIFDV ADFFD CKLLRSPHSYTS  SG+ RD PS
Sbjct: 1   METNPAASAVIVSNTPAIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDSPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            ENT+DSEQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AENTVDSEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CsaV3_4G032230 vs. ExPASy TrEMBL
Match: A0A1S3AW96 (ankyrin repeat and zinc finger domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103483337 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 9.0e-39
Identity = 83/107 (77.57%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPS 76
           METNP AS V+  NTPA   +KRNRSIFDV ADFFD CKLLRSPHSYTS  SG+ RD PS
Sbjct: 1   METNPAASAVIVSNTPAIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDSPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            ENT+DSEQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AENTVDSEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CsaV3_4G032230 vs. ExPASy TrEMBL
Match: A0A0A0L7L2 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G125000 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 80/107 (74.77%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPS 76
           MET P AS VV  NTP    +KRNRSIFDV ADFFD CKLLRSPHSYTS  SG+ RD PS
Sbjct: 1   METIPAASAVVVSNTPPIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDGPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
             NT+D EQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AVNTVDLEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CsaV3_4G032230 vs. TAIR 10
Match: AT1G01930.1 (zinc finger protein-related )

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-10
Identity = 38/88 (43.18%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 38  KRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPSVENTIDSEQNSRD--FKESFV 97
           K+ RSIFD++ADFFD C+L        S PS   +       T D E+   D   K+  +
Sbjct: 18  KQPRSIFDLTADFFDSCRL--------SNPS-ETQSAFGPPKTFDPEEAEEDKSSKDGVI 77

Query: 98  AHRWIYNICKAELKSLLDQGSHFKSDIH 124
             RW  N CK E  SL DQ  HFKSDIH
Sbjct: 78  LDRWTCNTCKIEFLSLQDQRYHFKSDIH 96

The following BLAST results are available for this feature:

BLAST of CsaV3_4G032230 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54969.1	1.7e-63	100.00	hypothetical protein Csa_012656 [Cucumis sativus]	[more]
XP_008438141.1	1.9e-38	77.57	PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis m...	[more]
KAA0049021.1	1.9e-38	77.57	ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis melo var. ma...	[more]
TYK17543.1	1.9e-38	77.57	ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis melo var. ma...	[more]
XP_011650787.1	3.3e-35	74.77	ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis sativus] >XP...	[more]

BLAST of CsaV3_4G032230 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G032230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1Q2	8.1e-64	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G617360 PE=4 SV=1	[more]
A0A5A7U602	9.0e-39	77.57	Ankyrin repeat and zinc finger domain-containing protein 1 OS=Cucumis melo var. ...	[more]
A0A5D3D037	9.0e-39	77.57	Ankyrin repeat and zinc finger domain-containing protein 1 OS=Cucumis melo var. ...	[more]
A0A1S3AW96	9.0e-39	77.57	ankyrin repeat and zinc finger domain-containing protein 1 OS=Cucumis melo OX=36...	[more]
A0A0A0L7L2	1.6e-35	74.77	ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G125...	[more]

BLAST of CsaV3_4G032230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01930.1	1.3e-10	43.18	zinc finger protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G032230.1	CsaV3_4G032230.1	mRNA