CsaV3_4G032040 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G032040
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 22580819 .. 22584028 (-)
RNA-Seq ExpressionCsaV3_4G032040
SyntenyCsaV3_4G032040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATCAAACCATGTAAGAGTAGAAAGAGATTTGATGTATGTCATACAGATTAAGATGATTATCATTTAATGTGTTGCTATTGTTCTTATAAAAAATGTTATAATTAAGGAAAGTGAAATAAGACAAAGGATACGAGTGTGACCATCAATATTGATTAAAATATAGCAAAACAAACTAAATTTTTTTTAGAAAAATACACCAAAAATTTCTAATTATATCCAAATATTTCCAACTTAATTTTAAAAAAATTCCAAACAACTTTCTTTTAAAAGATAAAAAATAGGTATGCATTAAATTTTTGGTAGAATGAACAAATAAAATTTGATGGAATAAAAGTGTATTTTTTTTCTAAATATACTTCAAACTTATCCACAGTTATAGAAAAACAGTTACAATCTTTTGTTTAGTTTGTTACCAATTTATTAGTTTGTTTATTTTTTCTAATGATTTATCCCATAAATTTAAATACTACTTTGATTTATACATTTTAAAAGGATTATTTTAGTTTTTATATTTTAAAAACGTTTATTTTAGTTATTGTACTCCTGACTTCATCCTATAGTTATTGTGTTGAAGGGTGAATTGATAAAGGAAGATAATATGAAATTAGAGATGATTTAATTTAAGTTGTTTAGATTAAGAAATTTTATATGTTATTGGAAGATGAATAAAATCTTATGTAAATACATATTTTTTAAAATTTTATATGTGGTAATTAAGAGTTGGTAAAAAGAAATAAAATTATTGTAAGAGATAAAAAAAGAAAGAAATTTAATTTTAAAAGCTAAAATGATTTGGATTGAAAATTTAACGACGAAAAAAAACGGAAGTCAAAAGTAGAGAAACAAAAAAGCTATTTAAAGTTAAGAAATGAAAATAATAAGAGTGGATTTGTCTGGAAGGTTCGTATCGTAGTGGTTAACGCTAAGGAGCGCAGCGTAGCGTGAGAAAAGAAGACACTATTGCTTTGGGCCCAATTACCTGACCCTAATCCTTCCCTCTCTCTTTCTTCCATTCCTAACAGAAATTTCTTTTCCTCTTTCTATTGCCTTCTTCTCTTCTTCCCCATTTTCATTATCATTCCCATTTTCCGCCTTTCTTTCTACTTCTCTTTCTTCCTCCTTTAATCCTTCTCCGCTCTTCTTATTGCTTCCTGATTCTTCTCCGCCGCGTCTCCACGTTTTCCGCCGATTTTCCGGTGAGTTTTTATGGTTTTTGTGATCATCTTTTGTCATTTTTTGCTTATCGATTTGTTTTGGTTGATTTTCTGATCAAACGCGCATTTCTGTGGTGTTTTTACTTCTATTTCATTCTCTATATGAGTTTTTTGTGTGCTTAATTCTCGTTTTTGTTTTGTTTTGTTGATTTTTTTGGTTTATGTTCTTTTGCTTTATAACTTGATGTCGGAATTTATCCTTTGTCAAACTTACTTATTGCCGTTGATGTTTTTGGACGATCTCCTTCGTCTTTCGATTTTCGCGATGAGTGTGAATTTGCATTCTACTTGGTTATTTCTTTCGTTTTTCAGTGTGATTGACTTTTCATTGGCTGCATTAGAAATTCATGACGGATTGACTTAACTTTGTGTAACTTGCGGATTGCTGTTGGTGTATTTTGACGATCTTCTTGGAGTTCCGATTTTCTTGATTAGTGTATAAATTTGAATTCTATTAGTTTTTTTATTCTATTAAAATTTATTGACGTATGTTTTCAATGTGATTGATATCTCTATAAGAGTTTAAATTAGACTGCCATTGTGAAACGTGCTGGTCACTGGTCCTTGGAAGTTGGACGTTCTCCTTTGTATTTCAGTTTTGTGATGAGTGGAAGTGTGAATTTTACATACGGTGGGACTCTGAAGCTAATTCACAATGTTTGTGTTTGGTAGTTTTGATCTTTCAGTTCTGAGGTTGTTATGTATTATCTATCTATCGTGTAGGACTTCATTGAACTGCAAGTTTATGATGGTTTAGGAGATGCTTTGTATATTCAGCCTGTGGTCTAAAGATTTTAGAAGCTTGGTTGTACTTGTTGTACATTTAGAGCTTTTGAATAAAAAGATTGTGATGTGTTATTAGAAAATTTGCAACATGCAATGTTGTTTTTACCGTGTCACAATCATCTTATCCTAGGTTTTAAATCTACTTAGCTTGTTGCATGCATCTGGAAGTTGGATGACTAAGCATTTGACCTCATAGTTCTAACATTTAAGTATTCGGCCAATTTTTTACCAGTAAAAATTGGAAATAAATTCTACACATGTTCGTTTGCTCCAATTTTGATTGAGCTGATTAGCCAAAAGGAACTACCTAAGGATCGAGAGCCAAGGGTGATCCCTCCTAAAGAGATTGTACGACAAAAAGGTTTTCCAATCTGTAATAGTAATGGAAAGATTTTATTACGAAAGACGTCTTTGTGATTTGAACTCCACCAAGAGGCCATATGTTGTATACTATAGACAAGAAGAAGTTTCAGTATTTCACGAATGGAATGAAATTTCTGCTTTGATCCTGCCAGCACACCAGTTCATGTGTCATCATGTTTGATTCTTTGTATTCTTTCTTTGGGGGTTTTAAGCAATCTTTCTACTTGGGGAATATTTGAGCATGAATACTAATATTACTTTGTGACTATTTAATTTATCTTCTGACCTGCTTCTTGCTCATTGGCGCATTATAGATTAAGAAGAATGTCAAGTGTTAACCCTTGTTAGATAACATAAAATTGTAATGAGAGATGTGACATTAAACCAAGTAAAATGCCATGGTTTGTACAAAGTTCTTTCAGTTTTGCAATAGAAGCAAAAGGATTCCACCTAGATGAGTTTTGGATGGTAGAACCACTCCATTGTTCTCTTGTAGAAAAGAGGGAAACTACTAATTAATTACAAAAGTAGAGCTTCTTAAGGAAGCCTTAAATTTGATAAACCTATAGTACCTCTCCCGTCCTAGTTCCTTAACTGGGATTCTGAGAGCACTCTGCCACAACTCCCTTGCCATCTGTTTGGATGAAACCTTTTGATTTGTAGTTCCTTCACTTCGCTTATTAGTCTCTCTTATTGTCTTGGGTTGACCTTTATAGAGTGGTGAATGAGAATGATGCTCTTGTCTTAACTCTGCCAATTATGTTTAGTTTTCCTCATTAGTTGGTTAAGATGGCTTACCTTTTACTTTGAAAACAGGTGTGAATAGGCAGAGAAGAAGTTAG

mRNA sequence

ATGATATCAAACCATCGTGAGAAAAGAAGACACTATTGCTTTGGGCCCAATTACCTGACCCTAATCCTTCCCTCTCTCTTTCTTCCATTCCTAACAGAAATTTCTTTTCCTCTTTCTATTGCCTTCTTCTCTTCTTCCCCATTTTCATTATCATTCCCATTTTCCGCCTTTCTTTCTACTTCTCTTTCTTCCTCCTTTAATCCTTCTCCGCTCTTCTTATTGCTTCCTGATTCTTCTCCGCCGCGTCTCCACGTTTTCCGCCGATTTTCCGGTGTGAATAGGCAGAGAAGAAGTTAG

Coding sequence (CDS)

ATGATATCAAACCATCGTGAGAAAAGAAGACACTATTGCTTTGGGCCCAATTACCTGACCCTAATCCTTCCCTCTCTCTTTCTTCCATTCCTAACAGAAATTTCTTTTCCTCTTTCTATTGCCTTCTTCTCTTCTTCCCCATTTTCATTATCATTCCCATTTTCCGCCTTTCTTTCTACTTCTCTTTCTTCCTCCTTTAATCCTTCTCCGCTCTTCTTATTGCTTCCTGATTCTTCTCCGCCGCGTCTCCACGTTTTCCGCCGATTTTCCGGTGTGAATAGGCAGAGAAGAAGTTAG

Protein sequence

MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLSTSLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS*
Homology
BLAST of CsaV3_4G032040 vs. NCBI nr
Match: KGN54945.1 (hypothetical protein Csa_012619 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 3.6e-45
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST 60
          MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST
Sbjct: 1  MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST 60

Query: 61 SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS 99
          SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS
Sbjct: 61 SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS 98

BLAST of CsaV3_4G032040 vs. ExPASy TrEMBL
Match: A0A0A0KZ46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G614190 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST 60
          MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST
Sbjct: 1  MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST 60

Query: 61 SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS 99
          SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS
Sbjct: 61 SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54945.13.6e-45100.00hypothetical protein Csa_012619 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZ461.8e-45100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G614190 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G032040.1CsaV3_4G032040.1mRNA