CsaV3_4G032030 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCACTAAAGAGCCAGGCCGGGGAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATATATTTCCATTCCCGCAGGCGTACTTGCTAGCAAATTGGTACCTTCCTGTCATCTATGGCTCTTTTATCTTGTTGAATGTGGGTCCCTTGCATGCGACTTTATCTTCAATGCAATCATCATGATGTTAAAAGGTTGATAATATGCTTGTAGTTAGTTTCTTTTCTCTTTGTGAGTTTGCATGTGAAGTTCTTCTTCTTTGTATTTATTTCTGCATCATTTGTAATTCATCCTATGGTTTCCAGGTCTATGATCTTACTGATATGATAAGCAGTGTTTACTTCAAGAGCTATTCAAATCTTTCTAGGATTCAGCGGGTGGAGTGGAACAACCGGTACATGATCATCCCCTTCTTTGCATTGGTTTATTTCTTTTTTCTTTGTAATATGTTTTTGTGTTTGCTGTTTTTACAGGGCAATGTCAACTGTCCATGCCATTTTCATCACAGCAGCAGCATTATACATGGTGTTTTTATCAGATCTCTATTCTGACCAATATTTTGGCCCTATTACCTTTCGTAATTCAACAATATCTACATTTGGCCTGGGAGTAAGTGCACTCTTTGTACTAAATTCATATATATGAGTAGGTATATTATCATAGAGTGAGAAATTTTGTCTTATGCTGGAAATGTTAAGGGCCTCCCTCAACTTTGTGAAGCTTATAGACTATAGTATGGTAACAATAAAGATGGAAGATTTGTCTAGTCAAAATAAAATTAAAAAAAAAAGATGGAGATTTTTGTTTCAGAGGATGGTTCTTGAAAGAATATGCCCTGATCAGGTCCTAAGAATTAGGATCGAAACCTGAAAGGAAATGTATACCTTTGAGATTTAAGACTCATAAAACTTTTTTTGGGTGGAGCAAATGATATAGATCATTGGTACTTCCCTATCAAGTTTTTGGTCATAATAATTGTTTATATTATTAAATTTGACATCACCTATTAGCTTAAGCTTTTTGGATGAATTTGTGATTTAAGATGGTATCAGAGCAAGTGGTCCAAGAAGGTCTTGTGTTCAAACTCTTGCAACGTTATTTCCTCCCCATTTAATATGGATTCCCACTTGTTGGGTTTTTATTGATATCTTAAGCCCATATGTGAGGGGGAGTGTTAGATATTATATTAAATTTGTCATCACCTATCAACTTAAGTTTTTGGGATGAATTGGTGATTTAAGAAACTTAAGTTTCTCACTGAGAGGATAACAGTGGCATTAAGCTTTATTTATGAGGAAGTATTGCATGGAAAGTTGGAAGGGGGGACAGAGAGCAGTGTGAATTTGGCATTTTGATAATTAGAACTCTCGACTGAAATAATATATAGGCTGAAAATGTGTTATCGAACAATCTAAAAATCTATGTTGATTATTGAAAATTGTATCCAAAGAAACATGACACGTTGTTAACCACCATGACTTGTCATAGTGGTCAACAGATGTTTGTGTAAATAATAAAGGATTAAAAGAGAATAAATTCGAGTCATGTGCCCACCTTTCTAGGATTTGATATTCTAGAAGCTACCCTAGATGAAACATAGTTCAAAGTGTTGCTGTGTTCTAGAGAATGATAGAAGCTTAGAAGTAAGAGCACCTGAAAAATAATGCTTTGAAACCAATTTCATCATGGGGTAATTTAAATATAACCTTTATTTCTGCATTAAAGTTTTCTTGTGCTACTTGATAGTTGATCTCAAATGTTATGTGTAGGGTGGATAACATGTGGGCTTTTTTGGAGATGTTACGTTAGGAGAACATTATTCAATTCTTCAAACAGCTGTTCTTATTACTTTGAAAATTTAGTTGTTTTATTATATTCGGAAGAGGATTTCAAGTAGTGCGTTAAAAGGGTCTAGTAAAAACCTTTGGATGACCCTAGTCTTGGGTTGTCCTTTGTTTTACAGTTTGTTAAATGTTACATGGGATTGGTCTAATATATACTTTTGTTAAGGATTTTTGGCTGTGTTAAGCCCGCTATGATTTTCCCCTTCCTTTTATCATCCGCCTGAAATGAGGTTTCACTTGGTCACTTCTATTCTACGTCCCTCAGAGTCTCCACCTTTTTTATTTTGGGTTTTCGTCATCCTCTCATTGATAGTGAGTTTTTGGAGGTTGTGGTTCTTCTTCCTATTGTTTCCGATAAGAGGTTTGTTGTTGGGATAAGAGATGTTTGGGTATGGATGGCTCCCAAGTCTATCTGAGGAATTTTTGTGTCGTTCCTTTTTCTTTTCCCTCAGTTCTCTTCCCATTTAGGGCTTAAGTTTTTTTTCTTCTCTTTGGAAGGTAAGAGTTCCTAAGAAAGTGGAGTTTTTTGCTTGAGAAGTACTACTCACTAGAGTGAGTGGTGAACACCGATTCTTTTCTTCTGTCTTGTCGTGTCCTTATCTTAGGTTTCGTTTGGAGGAGGATCTTGACCATCTTTTGTGGGGTTGTGAGTTTGCTTTTTCTCTTTGGAGTTGTCTTTTTTAGGTATTTGGTGTCGACTTTTGTTACATAATGGAGGAGATTTTTAATGAAAATTTCCTTTCGTGACAAGGGAATAGTCTTGTACCAAGCTTGTTTTTGTGTTATTTTGTGGTGAGTAGCTCAAGAGGAAGCTTTTAACTTTTCAAACTTTTCAAACAAGTGTGGGAAGCAGTGAGGTGTTTAATGCGTTTTTTTTTGGGTGTTTGTTAATCGGACTTTTTTGTAATTTTTGGTTGGCGTTATTCTTTTGGATTGGAGTCCGTTCCTGTAGTATTTTAGGACTCCTTTTTCTGTTCTAGTTTTCTATCTGTGTTAGACTTAAAATTTTGTCAGTCTAAACATAGTTTAGTGGTTAAAGCATCTAATCTACTGCTATCATAAAATCATTTCTTCAACCATTTCCCCAGTAATTATTAAACTCGGGATAGACTTAAGTTTTGATGACGCTACTGCAGGTGTCTGTCGGTTACTTCATAACCGATCTCGTGATGATCCTTTGGTTTTACCCTGCAATTGGTGGAATGGAGTATGTAAGTGCATTCTACTTTTTAAATATTACAAGCTATTTGTATGTTCCCGTCATCTTATCTTGTGTTCTTCAGGGAAAAAAAAACGTAGAAAATTCGTTGTTGACAACGTGAACGTGGTGTTTTTATTTTTTCAGGTGATACACCATCTTCTTTCTCTCTTAGCTGTGGCCTATGCCATGTTGACTGGTGAGGGGCAGCTTTACACCTACATGGTTCTCATCTCTGAGACAACTACCCCTGGGATCAATTTGAGATGGTAATTTTCCCTTAAAAAGTTTATGTTAAAATCCCATTTTAGTCCTTGTATTTCCAAGTTTCTTCAATTTTAGTCCTTGTCTTTTTAATGAAAACTTAAATTTATTCGATATTGTTAAACTTTTTTGAAATGTTTTTATTATCTATTAGCATTTCTGAATAAATTTTGACAACTTATTCACATTTTATAGTTTCTTGCATGAAAACTACTGTCATCAATTAGCCAATTCTGATAAAAAATAAGTTTGAGGAACTAAAATTGTACCAAATTTAAATTACTGGAGGGGAGAAAATGATATTTTAAGGAAAATTATAATTATGAAGTGAAATAGTGTGTTGATTTTGACTTGGAATTTGTTCATACATCCTCAGAATATAGTTTATTTTCTAAAATAAATTTTTGTGCGTAGGTACCTTGATACAGCTGGAATGAAGAAGTCAAAAGCATACCTCATAAATGGAATTGTTATATTCTTCGCGTGGCTGGTGAGTAACAAAAATTAATCTTATTATTTATATATGTATTTTTTTTATATATATTTATTTTGGGTATTTTCAAAATATAGCAAAATATAACAAAATAATGGATAGATTGTGATATTTTGTTAGTTTTATAGACACTTTTGGAAGTTTTTGTCATATAAAATAAAATTTCATTTATTTTTCTATATCTAATAATTTCTATAATATGTATTTTTGTAAGCAGTTTGGACTAATATGAATATATATATATATATATATTTTGTTGTTCAGGTTGCGAGAATTCTGTTGTTCATGTACATGTTTTACCATGTCTACTTACACTTGAATCAGGTATAATCAATCTCTAAGCTATTTGTTGAAGTTATTGGATTTACTACTCTTACTGTTTTTGCTCATTTATTGGCAAAAATGCATTTTCAATCTTTTACTTCCTTTATTATCATTTCTATCCATCACATCTACTCTTAAGTTTTTTTTCTTGTTACCTTTCCATTGCCACTTTACCTTTTTTTTCTTTAATATCCATGTTTACATCCACCTTTTTTTTTTTAAAAAATATCCATGTTTACATCTACCCGACTAATCTCATGGAATAATCTACTTGATTCTTCCTGCAACATATTGTGATGATTAGTAGTGTGTTATTATATATATGTACTTCACTTTCAATAAAATTTGATAAGGATTTATGTCTTGATTTGCTTGAATTAAAAAAAAAAAAAAACAATGCATTTTTATTTTATTTTTTTTGTGTGGCCATTAACAGGTTTTGCAGATGCACGTTTTTGGGCAATTTTTGGTGTTCGTGGTTCCATCGATATTATGGATCATGAACTTGACGTGGTTCTCTAAAATATTTAGAGGATTGAAAAAGACATTGGCAAAGAGGCAATGA ATGTCACTAAAGAGCCAGGCCGGGGAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATATATTTCCATTCCCGCAGGCGTACTTGCTAGCAAATTGGTCTATGATCTTACTGATATGATAAGCAGTGTTTACTTCAAGAGCTATTCAAATCTTTCTAGGATTCAGCGGGTGGAGTGGAACAACCGGGCAATGTCAACTGTCCATGCCATTTTCATCACAGCAGCAGCATTATACATGGTGTTTTTATCAGATCTCTATTCTGACCAATATTTTGGCCCTATTACCTTTCGTAATTCAACAATATCTACATTTGGCCTGGGAGTGTCTGTCGGTTACTTCATAACCGATCTCGTGATGATCCTTTGGTTTTACCCTGCAATTGGTGGAATGGAGTATGTGATACACCATCTTCTTTCTCTCTTAGCTGTGGCCTATGCCATGTTGACTGGTGAGGGGCAGCTTTACACCTACATGGTTCTCATCTCTGAGACAACTACCCCTGGGATCAATTTGAGATGGTACCTTGATACAGCTGGAATGAAGAAGTCAAAAGCATACCTCATAAATGGAATTGTTATATTCTTCGCGTGGCTGGTTGCGAGAATTCTGTTGTTCATGTACATGTTTTACCATGTCTACTTACACTTGAATCAGGTTTTGCAGATGCACGTTTTTGGGCAATTTTTGGTGTTCGTGGTTCCATCGATATTATGGATCATGAACTTGACGTGGTTCTCTAAAATATTTAGAGGATTGAAAAAGACATTGGCAAAGAGGCAATGA ATGTCACTAAAGAGCCAGGCCGGGGAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATATATTTCCATTCCCGCAGGCGTACTTGCTAGCAAATTGGTCTATGATCTTACTGATATGATAAGCAGTGTTTACTTCAAGAGCTATTCAAATCTTTCTAGGATTCAGCGGGTGGAGTGGAACAACCGGGCAATGTCAACTGTCCATGCCATTTTCATCACAGCAGCAGCATTATACATGGTGTTTTTATCAGATCTCTATTCTGACCAATATTTTGGCCCTATTACCTTTCGTAATTCAACAATATCTACATTTGGCCTGGGAGTGTCTGTCGGTTACTTCATAACCGATCTCGTGATGATCCTTTGGTTTTACCCTGCAATTGGTGGAATGGAGTATGTGATACACCATCTTCTTTCTCTCTTAGCTGTGGCCTATGCCATGTTGACTGGTGAGGGGCAGCTTTACACCTACATGGTTCTCATCTCTGAGACAACTACCCCTGGGATCAATTTGAGATGGTACCTTGATACAGCTGGAATGAAGAAGTCAAAAGCATACCTCATAAATGGAATTGTTATATTCTTCGCGTGGCTGGTTGCGAGAATTCTGTTGTTCATGTACATGTTTTACCATGTCTACTTACACTTGAATCAGGTTTTGCAGATGCACGTTTTTGGGCAATTTTTGGTGTTCGTGGTTCCATCGATATTATGGATCATGAACTTGACGTGGTTCTCTAAAATATTTAGAGGATTGAAAAAGACATTGGCAAAGAGGCAATGA MSLKSQAGELLKYLVLSDPVVPYISIPAGVLASKLVYDLTDMISSVYFKSYSNLSRIQRVEWNNRAMSTVHAIFITAAALYMVFLSDLYSDQYFGPITFRNSTISTFGLGVSVGYFITDLVMILWFYPAIGGMEYVIHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINLRWYLDTAGMKKSKAYLINGIVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHVFGQFLVFVVPSILWIMNLTWFSKIFRGLKKTLAKRQ* Homology
BLAST of CsaV3_4G032030 vs. NCBI nr
Match: XP_011653984.1 (TLC domain-containing protein 4 [Cucumis sativus] >KGN55433.2 hypothetical protein Csa_012466 [Cucumis sativus]) HSP 1 Score: 506.9 bits (1304), Expect = 1.0e-139 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. NCBI nr
Match: XP_008466799.1 (PREDICTED: transmembrane protein 56-like [Cucumis melo] >XP_008466800.1 PREDICTED: transmembrane protein 56-like [Cucumis melo]) HSP 1 Score: 485.3 bits (1248), Expect = 3.3e-133 Identity = 253/263 (96.20%), Postives = 258/263 (98.10%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. NCBI nr
Match: XP_038899443.1 (LOW QUALITY PROTEIN: TLC domain-containing protein 4-like [Benincasa hispida]) HSP 1 Score: 472.2 bits (1214), Expect = 2.8e-129 Identity = 243/263 (92.40%), Postives = 255/263 (96.96%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. NCBI nr
Match: XP_022940088.1 (transmembrane protein 56-like [Cucurbita moschata] >XP_022940089.1 transmembrane protein 56-like [Cucurbita moschata] >XP_022940090.1 transmembrane protein 56-like [Cucurbita moschata] >XP_022940091.1 transmembrane protein 56-like [Cucurbita moschata] >XP_022940092.1 transmembrane protein 56-like [Cucurbita moschata] >XP_023525630.1 transmembrane protein 56-like [Cucurbita pepo subsp. pepo] >XP_023525631.1 transmembrane protein 56-like [Cucurbita pepo subsp. pepo] >XP_023525633.1 transmembrane protein 56-like [Cucurbita pepo subsp. pepo] >XP_023525634.1 transmembrane protein 56-like [Cucurbita pepo subsp. pepo] >XP_023525635.1 transmembrane protein 56-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 453.8 bits (1166), Expect = 1.0e-123 Identity = 233/262 (88.93%), Postives = 250/262 (95.42%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. NCBI nr
Match: KAG6607986.1 (TLC domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 453.8 bits (1166), Expect = 1.0e-123 Identity = 233/262 (88.93%), Postives = 250/262 (95.42%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. ExPASy Swiss-Prot
Match: Q8CGF5 (TLC domain-containing protein 4 OS=Mus musculus OX=10090 GN=Tlcd4 PE=2 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.4e-17 Identity = 70/240 (29.17%), Postives = 124/240 (51.67%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. ExPASy Swiss-Prot
Match: Q6PGS5 (TLC domain-containing protein 4-B OS=Xenopus laevis OX=8355 GN=tlcd4-b PE=2 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 2.6e-16 Identity = 68/249 (27.31%), Postives = 127/249 (51.00%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. ExPASy Swiss-Prot
Match: Q96MV1 (TLC domain-containing protein 4 OS=Homo sapiens OX=9606 GN=TLCD4 PE=1 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 2.7e-13 Identity = 65/232 (28.02%), Postives = 118/232 (50.86%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. ExPASy Swiss-Prot
Match: Q6GLX2 (TLC domain-containing protein 4-A OS=Xenopus laevis OX=8355 GN=tlcd4-a PE=2 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.0e-12 Identity = 61/249 (24.50%), Postives = 120/249 (48.19%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. ExPASy Swiss-Prot
Match: Q5XIY2 (TLC domain-containing protein 4-B OS=Danio rerio OX=7955 GN=tlcd4b PE=2 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 2.5e-11 Identity = 56/226 (24.78%), Postives = 114/226 (50.44%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. ExPASy TrEMBL
Match: A0A1S3CS93 (transmembrane protein 56-like OS=Cucumis melo OX=3656 GN=LOC103504121 PE=4 SV=1) HSP 1 Score: 485.3 bits (1248), Expect = 1.6e-133 Identity = 253/263 (96.20%), Postives = 258/263 (98.10%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. ExPASy TrEMBL
Match: A0A0A0L1M1 (TLC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G614180 PE=4 SV=1) HSP 1 Score: 459.1 bits (1180), Expect = 1.2e-125 Identity = 243/263 (92.40%), Postives = 243/263 (92.40%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. ExPASy TrEMBL
Match: A0A6J1FJ18 (transmembrane protein 56-like OS=Cucurbita moschata OX=3662 GN=LOC111445812 PE=4 SV=1) HSP 1 Score: 453.8 bits (1166), Expect = 5.1e-124 Identity = 233/262 (88.93%), Postives = 250/262 (95.42%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. ExPASy TrEMBL
Match: A0A6J1J4U4 (transmembrane protein 56-like OS=Cucurbita maxima OX=3661 GN=LOC111481269 PE=4 SV=1) HSP 1 Score: 452.2 bits (1162), Expect = 1.5e-123 Identity = 232/262 (88.55%), Postives = 250/262 (95.42%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. ExPASy TrEMBL
Match: A0A6J1CIF9 (transmembrane protein 56-like OS=Momordica charantia OX=3673 GN=LOC111011776 PE=4 SV=1) HSP 1 Score: 451.8 bits (1161), Expect = 1.9e-123 Identity = 233/266 (87.59%), Postives = 253/266 (95.11%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. TAIR 10
Match: AT4G19645.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein ) HSP 1 Score: 332.0 bits (850), Expect = 4.3e-91 Identity = 168/264 (63.64%), Postives = 209/264 (79.17%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. TAIR 10
Match: AT4G19645.2 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein ) HSP 1 Score: 332.0 bits (850), Expect = 4.3e-91 Identity = 168/264 (63.64%), Postives = 209/264 (79.17%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. TAIR 10
Match: AT1G31300.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein ) HSP 1 Score: 328.6 bits (841), Expect = 4.7e-90 Identity = 164/262 (62.60%), Postives = 209/262 (79.77%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. TAIR 10
Match: AT1G31300.2 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein ) HSP 1 Score: 328.6 bits (841), Expect = 4.7e-90 Identity = 164/262 (62.60%), Postives = 209/262 (79.77%), Query Frame = 0
BLAST of CsaV3_4G032030 vs. TAIR 10
Match: AT4G10360.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein ) HSP 1 Score: 229.9 bits (585), Expect = 2.3e-60 Identity = 113/238 (47.48%), Postives = 161/238 (67.65%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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