CsaV3_4G031760 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G031760
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	exosome complex component RRP4 homolog
Location	chr4: 22318570 .. 22322707 (-)
RNA-Seq Expression	CsaV3_4G031760
Synteny	CsaV3_4G031760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGAGAGACTATTAGCGGTGAGATGATTGTCCAAATTCTTGTGAAGTATCCATTAGTGTCAAGCTCCCAGGCCCATATGTCATTTTAGAAGGTTTTTGTTTTCCTGAAAGTCTATTTGAAGGTTTCAGTATGATCGTCTAGTTTAGAAAGCTTATTTGACTGTAGGATTTTAGTTTTAAGAGCTTATTTGATCGGAAGATTTTGATTTTGAAAGCACTGTGTAGCAAAATTTCAACTGAAAGATTTGCAAACATTCGTTTTTTTTTTTTCGTTTAAGAATGTTTGGAAAGGGGACAAATTTTGGACGCTTGATATGGGGCTTGGTTATTAAGTATTTTTGTACTTATTTTTGCTTTTTCAAAATATTTTTAGATGAAGGATCCGGTAATAGTTTTGAAAATAGAAAAGTTTAACATTTTGGCCAAAGGCATCCTAGAAATTGTTTGTTATAAGTTTCTTCATCTGATTTGTATAAGTTGTAAATGTTTATAATTGATATGCTTCACATTGCGATTTTAGCCGCCATATATATTGGAAAATACTAGTTGTTACTCATTATTTGTTTGTTTGTTTTTTTATCACGTGTAATATCTTTGCAAATATTTTGTGATTGTATGTCATATATTGGTCATAAGAATCATGCAACACCACCATGTTCTAACCTAGAAAATTTCCAAATGCAGATATGAAAGGTTTACAACTTTCCTTGAATCATACCCAGAAGATTCGTCTTGAAAGAGCCCAAGAAAGGCTTAAATCTCTCTCTTCGAAGGGCAATTCTGATGCTTCTGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGTACATAATTCTTCATTACTTTTTTTATAATAGATGCTTGGATTGTGTACTCGTCAGTGGATTATATGCATTGTGCTATAATTGAAAATTGTATACAGGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTGCCTCTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCCTTGCGTGCCAGGTTGTCCATGAACTTTGTAATTTGGTTTTTCTTGGCCCTTTTTTGGTCTATTGTTATGATATCTTTTATGATCTAATTGTCTGTACTGGTTATTAGATATAAACCGGAGGTTGGTGATATCGTAGTGGGACGTGTTACAGAGGTAAAACCAAACACTTGCTATTTATCTTTTTGGTTTTACATAAAGGTAACATAGAGATATTGGTGAGTAAAACAGACAAGAAAAACTTATTCTGGTGTCATGGTTACAACACTTCAAATAGGAAAAACATGTTACAATGCCCCTCCAGCACTCCATTTTTTTCATACCATCTGATGTGATCTTATTCAGGTTGCACCAAAACGTTGGAGATTGGATATAAATTATTGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGGTATTGGAGTATTCTCTTTTGTTATGAATATAATGGTGCTTACTGTTGCACCAGACTGTGAATTAGCTATGCTTTCTGAAATTTTTTTACTGCAACTGATTCTCTCTGTCTCTCTTAAGAATGGTTGTGTTTGTTGTAACGCCGGGTTAATTGTATTATTTTATTTCTAGAGAAGGCGAACTGCCGTTGATGAACTCAACATGCGGAGCATTTTTGAAGAAAATGATGTCATTTGTGTAAGTTTGATAGCCTTTACGTTCTTCTCTCATCAACGTATCTTCTACCAAATTTGTCACGTGTCATTCGTATAAGGTTTTCTCCTAGATTTTTACATTTTTAAGAATTAAACTTTCGCTTTTTTTTTCTTTTGGGGGGGGGGGGGGGGGGGGGGGGAATGTTAATTCTTAGCTAGCCGAATTTATGGTAGGCTATAAATATTTGTGGCTGGCCAGGCATCAATTTATAAACACTACTATGTTTATGCTTAATTTTTCATTTAAGGAACAATAACAATACCACATTCTTTCTCAGGCTGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGCAAGGTAAAAATGAGTCTCTTTCTTAAGCTCCTGGATGTTGATGTAAACAAAATAAGTTTAAAATCAAATTTTGTACGTCTCCCATCTCTTCATTGGTTTCTTAGGGGAGACCCCACAGAAAGATTCTTGCTACCATGTGAATACTGATTTATAGTCGAATAGACAAATGTTATGGGGAATTCTAGCTGTTAAAACAGATTGTGGAGATGATTATAAAGTTGGTGCACACGAATGAGGGAGGAAGCCTTGAAGGGATGCCACCAAGATGAAAAGAGGGATAGGAGGAGATAGCGATGGGTGGACAGAAAGAAATACGAAAGATGGTCGCAGAAAAGTGATTTTGGAGAATGGAAAAAAGGAAAAAAAATATTTTCTAACACGTGAATGGTTATACTAGAAATTATGTCTAATTGTTACAACCATGTTTTTTTTTTTTCTGAAAAGTTAGCTGAATTCTAAGTCAAATTTAAAAAACAAAAACAACTTTTTCTAGTTTTCAAAACATAGACTTGGTTTTCTATAACATTAGTAGGAAGTACATAATAACGTAAGAAATTTAAAGATGGAATCTGTGTTTATAGGATTTCAAAAACTAAAAACAAAAAAACATATGGTTACCAATCTATTATAAGTTCAAAATTTTGGAGGATAGCTGTATTTGAATATGATATCTTTCAATGCAATTGTTATTAAATTCCTAAAAGCTTTTATGGCATCATCTCATATTGTTTCTTCATGACTGTTATGATTAAAATTTGTGCATATTTATATCCAGCTTGAACGTGGTCAGCTGCTCACAGTTTCTCCATATCTAATAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATACGGTATTGACCTAATACTTGGATGCAATGGTTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGTGGTGGATACGATGATAGAGGATCAAGTTGATAAACCTGAACAAAAGGGTTCGAAATTTGAAGGAACTTTTGGCAACCAAGTGCAAGAAGTATATACTCCATTAGAGACACGACAGAATATCTGCAGAACTGCAAATGCGATTCGAGTATTGTCTACCTTAGGTTTCATAATGACAGTAGAAGTCATCATGGAGATAGTTAATCTAAGTATTTCTCTAAACATTGATGTGCACGAAATGCTTGGCTCAGAGTTCTGTGTTCTCACGGCAGAAAAAGAGGTCGAACGACGTTCTTCGAGTAAGAAGAGGGGGTAATTTTGTCTTCTTTCAAGAATTGTGAGTAATTTGAATTACCAAAACCGTTTGATTTGCAGAGAAATTTAGTGTTATTGTATTTTGTTGAATTTTAGATTACCACCAGTTGTCGTATCAGTATAGAATACAATATGTCCTCAATTATTATGCTGTACGTGGTTTCATAAATGTCTAAGAATTACTTTTAGGATTTTACTATATGTCACATTTTTGGCTAGATTAATACTAG

mRNA sequence

ATGAAAGGTTTACAACTTTCCTTGAATCATACCCAGAAGATTCGTCTTGAAAGAGCCCAAGAAAGGCTTAAATCTCTCTCTTCGAAGGGCAATTCTGATGCTTCTGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTGCCTCTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCCTTGCGTGCCAGATATAAACCGGAGGTTGGTGATATCGTAGTGGGACGTGTTACAGAGGTTGCACCAAAACGTTGGAGATTGGATATAAATTATTGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGAGAAGGCGAACTGCCGTTGATGAACTCAACATGCGGAGCATTTTTGAAGAAAATGATGTCATTTGTGCTGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGCAAGCTTGAACGTGGTCAGCTGCTCACAGTTTCTCCATATCTAATAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATACGGTATTGACCTAATACTTGGATGCAATGGTTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGTGGTGGATACGATGATAGAGGATCAAGTTGATAAACCTGAACAAAAGGGTTCGAAATTTGAAGGAACTTTTGGCAACCAAGTGCAAGAAGTATATACTCCATTAGAGACACGACAGAATATCTGCAGAACTGCAAATGCGATTCGAGTATTGTCTACCTTAGGTTTCATAATGACAGTAGAAGTCATCATGGAGATAGTTAATCTAAGTATTTCTCTAAACATTGATGTGCACGAAATGCTTGGCTCAGAGTTCTGTGTTCTCACGGCAGAAAAAGAGGTCGAACGACGTTCTTCGAGTAAGAAGAGGGGGTAA

Coding sequence (CDS)

ATGAAAGGTTTACAACTTTCCTTGAATCATACCCAGAAGATTCGTCTTGAAAGAGCCCAAGAAAGGCTTAAATCTCTCTCTTCGAAGGGCAATTCTGATGCTTCTGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTGCCTCTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTCATCTATGTACGTGCCTTGCGTGCCAGATATAAACCGGAGGTTGGTGATATCGTAGTGGGACGTGTTACAGAGGTTGCACCAAAACGTTGGAGATTGGATATAAATTATTGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGAGAAGGCGAACTGCCGTTGATGAACTCAACATGCGGAGCATTTTTGAAGAAAATGATGTCATTTGTGCTGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGCAAGCTTGAACGTGGTCAGCTGCTCACAGTTTCTCCATATCTAATAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATACGGTATTGACCTAATACTTGGATGCAATGGTTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGTGGTGGATACGATGATAGAGGATCAAGTTGATAAACCTGAACAAAAGGGTTCGAAATTTGAAGGAACTTTTGGCAACCAAGTGCAAGAAGTATATACTCCATTAGAGACACGACAGAATATCTGCAGAACTGCAAATGCGATTCGAGTATTGTCTACCTTAGGTTTCATAATGACAGTAGAAGTCATCATGGAGATAGTTAATCTAAGTATTTCTCTAAACATTGATGTGCACGAAATGCTTGGCTCAGAGTTCTGTGTTCTCACGGCAGAAAAAGAGGTCGAACGACGTTCTTCGAGTAAGAAGAGGGGGTAA

Protein sequence

MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKGSKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEMLGSEFCVLTAEKEVERRSSSKKRG*

Homology

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BLAST of CsaV3_4G031760 vs. NCBI nr
Match: XP_031740749.1 (exosome complex component RRP4 homolog [Cucumis sativus] >XP_031740750.1 exosome complex component RRP4 homolog [Cucumis sativus] >XP_031740751.1 exosome complex component RRP4 homolog [Cucumis sativus] >XP_031740752.1 exosome complex component RRP4 homolog [Cucumis sativus] >KGN55395.2 hypothetical protein Csa_012890 [Cucumis sativus])

HSP 1 Score: 645.2 bits (1663), Expect = 3.1e-181
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG
Sbjct: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240

Query: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
           SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 328
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 327

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BLAST of CsaV3_4G031760 vs. NCBI nr
Match: XP_008442058.1 (PREDICTED: exosome complex component RRP4 homolog isoform X1 [Cucumis melo] >XP_008442060.1 PREDICTED: exosome complex component RRP4 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 605.1 bits (1559), Expect = 3.5e-169
Identity = 313/327 (95.72%), Postives = 315/327 (96.33%), Query Frame = 0


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 15  MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 74

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 75  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 134

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 135 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 194

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LL VSPYLIKRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPK  D MIED VDKPEQK 
Sbjct: 195 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPK-EDAMIEDHVDKPEQKA 254

Query: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
            KFEGT    VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 255 LKFEGT----VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 314

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 328
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 315 HEMLGSEFCVLTAEKEVERRSSSKKRG 336

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BLAST of CsaV3_4G031760 vs. NCBI nr
Match: XP_008442061.1 (PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo] >XP_008442062.1 PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo] >XP_008442063.1 PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo] >XP_008442064.1 PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo] >TYK05388.1 exosome complex component RRP4-like protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 605.1 bits (1559), Expect = 3.5e-169
Identity = 313/327 (95.72%), Postives = 315/327 (96.33%), Query Frame = 0


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LL VSPYLIKRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPK  D MIED VDKPEQK 
Sbjct: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPK-EDAMIEDHVDKPEQKA 240

Query: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
            KFEGT    VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 241 LKFEGT----VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 328
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 322

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BLAST of CsaV3_4G031760 vs. NCBI nr
Match: KAA0041865.1 (exosome complex component RRP4-like protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 600.5 bits (1547), Expect = 8.6e-168
Identity = 313/328 (95.43%), Postives = 315/328 (96.04%), Query Frame = 0


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRAR-YKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVL 120
           GEVVASICGVVERVNKLIYVRALRAR YKPEVGDIVVGRVTEVAPKRWRLDINY QDAVL
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARLYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVL 120

Query: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERG 180
           MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERG
Sbjct: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERG 180

Query: 181 QLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQK 240
           QLL VSPYLIKRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPK  D MIED VDKPEQK
Sbjct: 181 QLLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPK-EDAMIEDHVDKPEQK 240

Query: 241 GSKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
             KFEGT    VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID
Sbjct: 241 ALKFEGT----VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKRG 328
           VHEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 301 VHEMLGSEFCVLTAEKEVERRSSSKKRG 323

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BLAST of CsaV3_4G031760 vs. NCBI nr
Match: XP_038882865.1 (exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882866.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882867.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882868.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 590.9 bits (1522), Expect = 6.8e-165
Identity = 300/328 (91.46%), Postives = 315/328 (96.04%), Query Frame = 0


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQ+SLNHTQKIRL+RAQERL+SLSSK NSDASV+VADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQISLNHTQKIRLQRAQERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEV+A+ICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 61  GEVIATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LLTV  YL+KRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP   D MI+DQ++K EQKG
Sbjct: 181 LLTVPSYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP-TEDMMIDDQINKSEQKG 240

Query: 241 SKFEGTFGNQVQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
            KFEGTF NQVQ+ VYTPLETRQNICRTANAIRVLS LGFIMTVEVIMEIV+LSIS+NID
Sbjct: 241 PKFEGTFENQVQQRVYTPLETRQNICRTANAIRVLSILGFIMTVEVIMEIVSLSISMNID 300

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKRG 328
           VHEMLGSEFCVLTAEKEVERR+SSKKRG
Sbjct: 301 VHEMLGSEFCVLTAEKEVERRTSSKKRG 327

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BLAST of CsaV3_4G031760 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 1.9e-117
Identity = 212/327 (64.83%), Postives = 262/327 (80.12%), Query Frame = 0


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+ LQL L+ TQK+R ERA ERL+SLSS  NSDASV+V D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GE++A++CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N+ QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQK 240
           QLL V PYL+KR K HFH++E  GIDLI+GCNGFIW+GEHV+       + D +   +QK
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVE-------VRDPMAIDDQK 242

Query: 241 GSKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
             +   +     ++ + PLETRQ ICR  NAIRVLS LGF +T+EVIME VNLS S NID
Sbjct: 243 DEEMISSSSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKR 327
           +H+MLGSEF V+ AE E ERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]

BLAST of CsaV3_4G031760 vs. ExPASy Swiss-Prot
Match: Q8VBV3 (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.0e-46
Identity = 108/213 (50.70%), Postives = 141/213 (66.20%), Query Frame = 0


Query: 13  KIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVE 72
           ++RL +A++ L     + +    VV  DTI    + G ++GHGT     +++AS+ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVSPYLIKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ VSP L+KR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI---GEHVD 222
           +K HFH L   G  +ILG NGFIWI    EH D
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD 213

[Close]

BLAST of CsaV3_4G031760 vs. ExPASy Swiss-Prot
Match: Q2KID0 (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-45
Identity = 104/205 (50.73%), Postives = 137/205 (66.83%), Query Frame = 0


Query: 13  KIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVE 72
           ++RL  A++ L     + +    VV  DTI    + G ++GHGT     +++AS+ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVSPYLIKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ VSP L+KR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI 217
           +K HFH L   G  +ILG NGFIW+
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWV 205

[Close]

BLAST of CsaV3_4G031760 vs. ExPASy Swiss-Prot
Match: Q13868 (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 184.5 bits (467), Expect = 1.9e-45
Identity = 105/205 (51.22%), Postives = 136/205 (66.34%), Query Frame = 0


Query: 13  KIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVE 72
           ++RL  A++ L     +      VV  DTI    + G ++GHGT     +++AS+ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVSPYLIKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ VSP L+KR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI 217
           +K HFH L   G  +ILG NGFIWI
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWI 205

[Close]

BLAST of CsaV3_4G031760 vs. ExPASy Swiss-Prot
Match: Q09704 (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.6e-45
Identity = 106/258 (41.09%), Postives = 157/258 (60.85%), Query Frame = 0


Query: 51  LKGHGTLDLNGEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLD 110
           ++GHGT   +G + AS+ G V+RVNKLI V+ LR++Y PE+GD+++G++ EV PKRW++D
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVD 130

Query: 111 INYCQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQAR 170
           I   Q+AVLMLSS+NLP GIQRR+   DEL MRS F+E D++ AEV+    DG + +  R
Sbjct: 131 IGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTR 190

Query: 171 SQKYGKLERGQLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMI 230
           S KYGKL  G  L V P L+ R K H + L   G+D+IL  NG++W+ +H + +      
Sbjct: 191 SLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKHNENQHSSV-- 250

Query: 231 EDQVDKPEQKGSKFEGTFGNQVQEV--YTPLE-TRQNICRTANAIRVL-----STLGFIM 290
              + + E++ S  E  + N+  E+  YT L  +R +IC    A R L     S   F  
Sbjct: 251 --SITRLEEEAS--ESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYE 310

Query: 291 TVEVIMEIVNLSISLNID 300
           +  V   + +L++  N+D
Sbjct: 311 SSLVFSNLQDLTVPKNMD 321

[Close]

BLAST of CsaV3_4G031760 vs. ExPASy TrEMBL
Match: A0A1S3B5H2 (exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486036 PE=4 SV=1)

HSP 1 Score: 605.1 bits (1559), Expect = 1.7e-169
Identity = 313/327 (95.72%), Postives = 315/327 (96.33%), Query Frame = 0


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 15  MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 74

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 75  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 134

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 135 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 194

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LL VSPYLIKRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPK  D MIED VDKPEQK 
Sbjct: 195 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPK-EDAMIEDHVDKPEQKA 254

Query: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
            KFEGT    VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 255 LKFEGT----VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 314

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 328
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 315 HEMLGSEFCVLTAEKEVERRSSSKKRG 336

[Close]

BLAST of CsaV3_4G031760 vs. ExPASy TrEMBL
Match: A0A1S3B4T9 (exosome complex component RRP4 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486036 PE=4 SV=1)

HSP 1 Score: 605.1 bits (1559), Expect = 1.7e-169
Identity = 313/327 (95.72%), Postives = 315/327 (96.33%), Query Frame = 0


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LL VSPYLIKRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPK  D MIED VDKPEQK 
Sbjct: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPK-EDAMIEDHVDKPEQKA 240

Query: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
            KFEGT    VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 241 LKFEGT----VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 328
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 322

[Close]

BLAST of CsaV3_4G031760 vs. ExPASy TrEMBL
Match: A0A5D3C2G3 (Exosome complex component RRP4-like protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00630 PE=4 SV=1)

HSP 1 Score: 605.1 bits (1559), Expect = 1.7e-169
Identity = 313/327 (95.72%), Postives = 315/327 (96.33%), Query Frame = 0


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LL VSPYLIKRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPK  D MIED VDKPEQK 
Sbjct: 181 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPK-EDAMIEDHVDKPEQKA 240

Query: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300
            KFEGT    VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV
Sbjct: 241 LKFEGT----VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 328
           HEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRSSSKKRG 322

[Close]

BLAST of CsaV3_4G031760 vs. ExPASy TrEMBL
Match: A0A5A7TKA1 (Exosome complex component RRP4-like protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G002510 PE=4 SV=1)

HSP 1 Score: 600.5 bits (1547), Expect = 4.2e-168
Identity = 313/328 (95.43%), Postives = 315/328 (96.04%), Query Frame = 0


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVASICGVVERVNKLIYVRALRAR-YKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVL 120
           GEVVASICGVVERVNKLIYVRALRAR YKPEVGDIVVGRVTEVAPKRWRLDINY QDAVL
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARLYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVL 120

Query: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERG 180
           MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERG
Sbjct: 121 MLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERG 180

Query: 181 QLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQK 240
           QLL VSPYLIKRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPK  D MIED VDKPEQK
Sbjct: 181 QLLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPK-EDAMIEDHVDKPEQK 240

Query: 241 GSKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
             KFEGT    VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID
Sbjct: 241 ALKFEGT----VQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKRG 328
           VHEMLGSEFCVLTAEKEVERRSSSKKRG
Sbjct: 301 VHEMLGSEFCVLTAEKEVERRSSSKKRG 323

[Close]

BLAST of CsaV3_4G031760 vs. ExPASy TrEMBL
Match: A0A6J1K7S0 (exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490943 PE=4 SV=1)

HSP 1 Score: 579.7 bits (1493), Expect = 7.6e-162
Identity = 294/328 (89.63%), Postives = 311/328 (94.82%), Query Frame = 0


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+GLQ+SLN TQKIRL+RA E L+S+SSK NSDASVVVADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GEVVA+ICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINY QDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKG 240
           LLTVSPYL+KRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP   D M+ED ++K EQKG
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP-TEDMMVEDPINKSEQKG 240

Query: 241 SKFEGTFGNQVQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
           SKFEG+FGNQVQE +YTPLETRQNICRTANAIRVLS LGFIM+VEVIME V+LSISLNID
Sbjct: 241 SKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNID 300

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKRG 328
           VHEMLGSEFCVLTAEKE ERR+SSKKRG
Sbjct: 301 VHEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of CsaV3_4G031760 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 423.7 bits (1088), Expect = 1.3e-118
Identity = 212/327 (64.83%), Postives = 262/327 (80.12%), Query Frame = 0


Query: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           M+ LQL L+ TQK+R ERA ERL+SLSS  NSDASV+V D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
           GE++A++CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N+ QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQK 240
           QLL V PYL+KR K HFH++E  GIDLI+GCNGFIW+GEHV+       + D +   +QK
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVE-------VRDPMAIDDQK 242

Query: 241 GSKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNID 300
             +   +     ++ + PLETRQ ICR  NAIRVLS LGF +T+EVIME VNLS S NID
Sbjct: 243 DEEMISSSSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEVERRSSSKKR 327
           +H+MLGSEF V+ AE E ERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

The following BLAST results are available for this feature:

BLAST of CsaV3_4G031760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740749.1	3.1e-181	100.00	exosome complex component RRP4 homolog [Cucumis sativus] >XP_031740750.1 exosome...	[more]
XP_008442058.1	3.5e-169	95.72	PREDICTED: exosome complex component RRP4 homolog isoform X1 [Cucumis melo] >XP_...	[more]
XP_008442061.1	3.5e-169	95.72	PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo] >XP_...	[more]
KAA0041865.1	8.6e-168	95.43	exosome complex component RRP4-like protein isoform X2 [Cucumis melo var. makuwa...	[more]
XP_038882865.1	6.8e-165	91.46	exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882...	[more]

BLAST of CsaV3_4G031760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVT7	1.9e-117	64.83	Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P...	[more]
Q8VBV3	1.0e-46	50.70	Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1	[more]
Q2KID0	1.1e-45	50.73	Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1	[more]
Q13868	1.9e-45	51.22	Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2	[more]
Q09704	9.6e-45	41.09	Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of CsaV3_4G031760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B5H2	1.7e-169	95.72	exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A1S3B4T9	1.7e-169	95.72	exosome complex component RRP4 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5D3C2G3	1.7e-169	95.72	Exosome complex component RRP4-like protein isoform X2 OS=Cucumis melo var. maku...	[more]
A0A5A7TKA1	4.2e-168	95.43	Exosome complex component RRP4-like protein isoform X2 OS=Cucumis melo var. maku...	[more]
A0A6J1K7S0	7.6e-162	89.63	exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114909...	[more]

BLAST of CsaV3_4G031760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03360.1	1.3e-118	64.83	ribosomal RNA processing 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..29
None	No IPR available	GENE3D	2.40.50.100		coord: 36..87 e-value: 1.7E-17 score: 64.7
None	No IPR available	GENE3D	2.40.50.140		coord: 88..177 e-value: 1.5E-18 score: 68.6
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 11..322
None	No IPR available	CDD	cd05789	S1_Rrp4	coord: 86..176 e-value: 6.23778E-34 score: 118.036
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 44..82
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 90..169 e-value: 6.6E-5 score: 32.3
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 179..219 e-value: 3.3E-12 score: 46.7
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 11..322
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 179..322
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 85..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G031760.1	CsaV3_4G031760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding