CsaV3_4G031690 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G031690
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionMediator of RNA polymerase II transcription subunit 11
Locationchr4: 22249262 .. 22256185 (-)
RNA-Seq ExpressionCsaV3_4G031690
SyntenyCsaV3_4G031690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTATGTATGGATTTGGGGTTGGTGTATTTTTTAGGTGTCAAATGCAAATTATCTATGTGAGTCTGTAATTGGTTCATTTTATATACATTTGGACTATTTTCAACTCTAGTAAACAATGCACTCTATTGGGAAACTTATTGGAAAAAATCTATAGAAACTTTTTAGGTTGTTAATCAAAGTGAATGTCATGAACCATTTACTTCTTGCGTATTTTATAGGTTTTTTTTTAAAGTTTTGATAGTTAAAGAGGCACTTAGATACTTCTTAGGTACTTTTTAAGTTGGTTTGAGGGTGAAATTGTTGTTGAAGTAATTTTGAGACTTGAAATGCTACTTTCACAAAAGCCCATGGGATGCTCGAATCCGAAGCAGCCACCTAGCAAATCCCTATCCCAAGTTGGAGTTCCCAAATCCAACCCTAGCCTGCCCGATTTCCTTCCATTCTTTTCCTCTATGTAGATCTTCCTACAGTTTCCCAGATTTTTATGAGGATCTATATTGTTCATCGTTAATGCCTTCACAATCTATTGGATGTGGCAGAAACCTTAAACCTGGTTCTTTGGTGAAGAGATCCTTTGTAATAACGGATGATTTCAGCTTTAGTTGAGATGTTAACCTTTATTACTTATTAGGACACTATTTTTGGTTTGTTTACCAGTAATTTTTTTTTAAAATTTTGTTCACGGTTTAGTTTGTTTAAATTTCTTTTTGCTGTGTGATTTATCACAGCCAGCATAGCTCTTGATGGATCCGCCGGCCCATAATACTTCATTGCAGCGCCTCCAAAATGTGGAGAAGGTTGGAATTACTTTCAATATCACAAACGTTTTGTTTCTAGTTCTTTGCATGGTCTTTATTGCAGCACCATGTTGATATAATTTTTTGGCCAACTTTTGTGTTTCATTCCTGCAGAGAATTGTGAGGGTTTTAGAACTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGTGAGCCTTCTGTTCAGATAGGTTTATTGCCTCGCGTTGGGCGTCTGTGTTTAATGACGTTTGTACTTATTCACTGGGTTTTTTTCTTAAGCCTTTTATTTCTCAATAGGTTAGGATCTGTTCGGTTCCTTCTGTGCTGTCATGTTTGTATGTCAAACAGTTTTTCTGTTGCAATTGTTTATTTTTATTATTTTGGTTGACCCTACTTTCTTTCATCTTGTTCTCTCCATGAAAGTTCGGTTCCTTCAGGGTAGTCACTTTTGTATGTAAATTTGAAAGTTTAGGTTCTTCGATTCAATGATCCTTCGTCTTCTTTCTATTTTTCCCAAAGAAGTGTTCCATCATGGGTGAAGGGATTCCAAATTTTGGGCTCCCAAGCCATCTAAGGGTTTCTCTTGTAACACTTTTTTTTTCATGTATTCTTTGCTCCCTTCCTCTCTGTTTGGGTGCGTTTGCATTCTCCTCTCTTTGGCCAGCTAAAACTTCTAATGATGTTGAAGTCTTTGTTTGACAAGTTCTTGATGGGAAAGTAAACACACAAGATCTTCTACAAAGACATTATCATTCACTCAATTGCAATAGTATATTTTTTGTTGTAAGGAGGATGAGCATGAATATTTTTTAGTCTTTTTATTTTGTGTGTGTCCAGTCTAGCTTACACACATACCGACTAATCTTGCAAGACAACTTGTCTAACCCTACAGTATTTGGATAGAGGAACAATAGGATTTCTGGAAGGTCTTGTGGAGTGTAGTTGGGGTATCTTTTTGCTACACCCCAACTAAACGTGTAGGATATTAAAACTTCAGTAGGCGACTACCATGGATTGAACCTATAGTCTCTTAGTCTTAGAAGCATCTTATGGCATAGTTGTTTTTGTTCATTTTGTGGGAATTCAGATAGAGGAACAATAGGATTTTTAGAGGGTCTAAAAGATCTGGAGATGATCCCTGTTTGGGTGTTTGTTCGCTTTAATTCCTCATTATGGGTGTTTGATATTCGAGCTTTTTGTAATCGCCAACATCATTTCATTCTTTTTGATTGGAATCCTTTCTTGTATTTGTGCTGAGGCTGTTTTCTTTTTTATTTGTTTTTGTGGTATGCCCTTTACCTCCATTCCTCTCAATAAAAGCTTGGTTTCTTATGTAAAAAAGAAAAAAGAAAATTTTATGGCAAGGCTTCATTGTATAATTGCATTATTCTAACAATTCAAGCATGTAATAGATTTTCTTTTTCATGGTAACTTCACCGGAAATTATCATGGAAAGCTTACATTCAAGCAACTAATTTATAGAAATTTGAACTCTGATTAATTGTCATATTTAAAGAATGTTATTATAATAAATTTCATCCTATCAAAAGTTCAGAATCAGAGGAATCTAACAAAGGAGGAAGAGTGGAGGAGTAAGGTAGGTCTGCTCTCTCCTCTCTCCTCTCTCCTCTTTCTACTGGCTTATCCTTTGATTTTCTGTACCTTTCTGTGATTTCTCCGACATCTTCTTCAATCCTTGGCTTCACTTTTAGTCTTCTCTGGGGTTTCTTCAACTTAGTTCTTGCTCATGGAAGTAGCAAGTTGCAAAATACTAAATATGCACTTTTGCGTTTGGCTGGATAACGGCCACTTTCACGTGGAGGACGTGGAAGCTCAACGATCCCTATTCATCCCAGAAGCCCATCTGAATTGGTTCCTTGTAGCGATAGCAGAGTTAGTCCGAGGCTTGAAGGATCGGTTCTTTCTGAAATTTGGGGAGTTAGACCGTGGGAGAACGAAGATCTTAAATTTCAGATTTGAAATTGGCGGGGTTTTATGTTGCGATTTTTGGCCGGCTTCAGGTGGGCGTTCAACCATCAAGGTTTCTTCAAAGGAAGACAAAGAGGGGTGGTCGTCCTTCCTCTAGATGTGGGAACAGTTTATCAAACTTGGAGAATAAGAAATGGTTCTCAAGTCATCGGCTTCCAACTCAACTCCCTTCGCAGTTCCAGAGATTGTCTAATGCTGATGGAGTTAAGACCGGATTTTTTTTAGCTAATGAGCAGAAGTTAGGAAACCCAAGCCATAACAAAGGTAAGCTTGAATCCTTACAGCCTCCCATGTTTTGAAGTCAGGAATTCAAAACCCCTTGACCTTTGTTTGAGCACTAGCAAAACAGAGCGTTCACTGGGGTCATTTGCATTTCTACCACTCAAGTAGCTGACGTCTCCTTATTGGGTGCACAAGAATGAAGAGGTTATTGAGGAAGATTTTAGCACTATGTGGATCATTTCCAGGCTCTTCGTATATAATGATTGGGGAAGGATATTGCCAAAACTCTGGAGGCTCACTTTCAAGACAAAATCAGCATCAATCCTTTGTATGCTGATAAGGCATTAATCCGCCTCTCTCGAAGGAATTTGGAAGATTTGGTTGAGACTCCTAGTAAATGCCAGCATATTGGAATCTTCCATCTTTTAGTCAAAAAATGGAACAAGTTCAAACATGGCAGGCCATTTATTCGAGGATTTGGAGGGTGGTTGTTCATCAACAACTTACTGTTAGATTATTGGAAAAATGATGTCTGTCTTTGTTGCAATTAGGAATTATTTCGGTGGCCTTGAGAGCATATCCTTGGATACATTGAATATGGTTGATGTGTCTAAAGATAAAATTAAGGTGAGAAAATCTCTGTGGTTTTTTACCAACAATGATAATAGTAGGATGCTTTTTTTGGAAAATTTTATCTCAACTTTGGAGATATTGAAATTATTGAAGAGCCCTCAGCCGTTCAAGATGCCCTCTTTATTAAGTATTTCTCAAATCCGATAGACTTAGCAAGAATTGTTCTTGTCTTAAAAGATGAAGGCTAGATTTGAATGTTTCTAACCAGGAATGAGATCTTCTCAATTTGTCTCTTTCAAAGCCAAGCTTCTCAAGGAACCCATGCGTTGACTTCAATAGTAATCTCGACCAAGCTTTACCGGTCAGGGCTCCTTGCTCATTTTGTCGCAATCTTCCTCCCATTGCAGTAAATTTGGTTAATCAATTCAAACTAAGAGGGAACAAGAGAGAAAAATGTGACTGAATCCCTTGCTTTGCCCAATAAGAATCAATGCGGCCACACAACAACCAAGCAATTAAACTCCTCTCAAATTAATTCGGCTGACATCTTTTTAAATAAAGGACAGATGGCACCTCTCACACGTCAGACACTAATAACCTGCAAAATTTTCGGCAGCTGCTCACTAGGCCATAAGAACTTTTAGTTCCCTCAACGGCTGCTCTAGAACCCTTAAAAATACCTTCAAACTAAGCTCATTTCAACTCATCTTTAGGTTCTCTCTCATCTTCTTCTCTCCAACATTCCTCAGCAAAGTCAGGCCCAAGAGCAAAATAAAAAAGAAAGAAACATTACAAAATCTTCCCACATTACCTCAAGCCATTCCCAAATTTTTTCATTGAAAGAAAAAATCTAAGAGGTCTTAGGCTAAACAATCCTTAAAAGCCAAGATAATAGGAGATCAAGCTCTTGATTTGATAAAAACAATCCGCGCCCACTCTCATTCCTTAGTCCAATCCAGCATATCCAAGTTTTTAGAGGCTAATCCAGACTTGTTGAATGTTAGTTGTACCCAGATTCTAGCTCCAACTCGTCCTACTAATTGAATTGGTCATGACTCTCACCCTACACAGTTTAAGTACTTAGAGCTCTATTTGCCCAACTTGAAGGTAAAACTTTTTAGGGGCTCTTTGAGCAAAACCCCTATCAATCCCTCTAGAAAGAAGGGTGAGTCTTCCTTTGACTCCCCTTTCAACGTTAGCAATGAGAAATTCGAGTTTTATGCTAAGTAAGTCATCCGAGCTTGAGAGGCAGAAGCATTTTGAGTCTTTAGAAACAGATCTTGCACTATTTCATTGCAACGAAGACTTGAAGTCTGAAATTTTGTCCTTTGCTACTTGCTCGTCCCCAGTCTTGCGAAATACCAGGTCATCTAAAATCATAGTTGCCGACTGTGAAATTATCTTAATTTGATTCTTTAGACAGTTAAATGTAAGTTTCTCAGACGATTGGTCCAATTTCTGGCTTTCCTTAATTTCTCTTCACATAGGTGGCAAGTAAAACCTCGCTGATTGTGGTAGATGACTTGAGATTGGTGTTGATTTTGATCTTTATTTCTTTGGTCTGCCTAAGGAAGTAACTTCTCAGGTTTGTTTTTGGGATAGGCTGATGGTATTGAAAACTTTTTCGAGCTTTCTATGGGTTCAGTTTATATTGGCAAGACAGATTTGGGGCAACTGTTTGCATCTTCTTAGCGGCTCTCTTTCTCTGATCATTTTGAAGATTTGGGCGTGCAAGTTTTCAGTCTCAAATGGGTTCCTTATGAGAGAACTTTAAGTTTTGATTTGTATTTAGCTTTCTACTTTTGTTATATCTTTGAGTCGTTTGTTTTTGTTTGTTTATTTTCCATTGGAATTTGTTTTTTGGTTGCCTTCTTTTTGTTTGCCAACGAAATAAAAACTAGCTTCAGTTTTAGTTTTGATTGTATTCTTCTAGTTCTCTTGCTCTTAGTATAATACTCTTGTACTTTGAGCTTAAGTATCATTTATTATCATAAAGAGGCTTGTCTTTGTTAAAAAAAATGTCTAGAATCCAGGTAAACTTTACATCTTTTGTCCCAGGATCGAAACTTGGTTCTGATACCAGTTGATAGAACACTGATGTAGTGTTTCTATTATATTGATATCTCAAACAGAAGATACAATATGAAAATACTAGTGATCCTCAAAAGTAGAACCACAATAAGCAGAATTCACAAACAACAAACAGAACTTATCCTAAACAGAATTTGCAAGAACAAATCAATGCAGAAAACATAAAGAAAATTACTTAGAACAAAAGAACCTATTCCGCTGCTTCTCCTCTCTCTCAAGGAGTAATGCAGCCTATTTTGACTCCACAAATTTCGTACCCCTCTCCTCTTCCACCAAGCATTTAACTACCCCTTCAGATTTAACCGCCCTCTTCACCCTAACTGCTGGTCCCACCCACGTGAGCTTCCTCACTCTCATTTCTGTCAGAATTCTTCCGTGCATCACCCTCACGTGCCATTTTATTTCTTCTATTATATGTAAACAATAATGGGGTCTAACAGATTCCGTCCTGGAAAAGCGTGGAACTATTAGGCACATTGTGGGAACATACTGGGATACTATTAAGCACGTAATGCTTTGTTAATTTGTTGTTAGTTTGTTGGGTGAGTTGGAGGGTGTAGTTGGGATATTTTTGCTGATTGATATTAACTTTTTACCATTTAGTTCTCAGAATCAGAGTCCTACCCTAACAGATTTTAGAGAAGAATTAAAAGATAATTGTTTTGTGGTTGTTATGCTTATTTTTTATAATGTTAAAGATGGAGCATCATGATCAGGATTTGGTAACCTCCGATATTTAATTTCAAGTGAAGAGTATGGATATATTTTCTATCCACAACTCTCTAGTCTCAGTTAGTTATAATAGTTATCTAATTGATGACAACCTGCCCAAAATATCTATTAAAAAATCTTGAAAGCACCCCCCTTTCTACTTTTTGGAAGTTCATAATAGGTGTTTCTCTCTCACTAGTAAAGTAAATGTTTCATTTGAAAGTGTCTCAATGCAATCCTGTATTTCACCTAAAATCTCTTTGAACTATATTTGAGGAATAACGTGACATTTTTACTTCCTTGAAATCAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAATGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGGTTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATAGAAGATTCTTGA

mRNA sequence

ATGGATCCGCCGGCCCATAATACTTCATTGCAGCGCCTCCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTAGAACTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAATGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGGTTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATAGAAGATTCTTGA

Coding sequence (CDS)

ATGGATCCGCCGGCCCATAATACTTCATTGCAGCGCCTCCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTAGAACTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAATGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGGTTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATAGAAGATTCTTGA

Protein sequence

MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS*
Homology
[Close]
BLAST of CsaV3_4G031690 vs. NCBI nr
Match: XP_004144648.1 (mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus] >XP_011653961.1 mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus] >XP_031740627.1 mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus] >KAE8649777.1 hypothetical protein Csa_012388 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 1.5e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 118

[Close]
BLAST of CsaV3_4G031690 vs. NCBI nr
Match: XP_008442051.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_008442052.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_016899531.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 241.5 bits (615), Expect = 3.7e-60
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTIDDYQVK+EDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]
BLAST of CsaV3_4G031690 vs. NCBI nr
Match: XP_022927640.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >XP_022927641.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >KAG6583673.1 Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 234.6 bits (597), Expect = 4.5e-58
Identity = 112/118 (94.92%), Postives = 115/118 (97.46%), Query Frame = 0 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTID+YQVK+EDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS 118

[Close]
BLAST of CsaV3_4G031690 vs. NCBI nr
Match: XP_022142440.1 (mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP_022142441.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia])

HSP 1 Score: 234.2 bits (596), Expect = 5.9e-58
Identity = 111/118 (94.07%), Postives = 115/118 (97.46%), Query Frame = 0 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTID+YQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 118

[Close]
BLAST of CsaV3_4G031690 vs. NCBI nr
Match: XP_023520392.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023520393.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57
Identity = 111/118 (94.07%), Postives = 115/118 (97.46%), Query Frame = 0 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTID+YQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDA 118

[Close]
BLAST of CsaV3_4G031690 vs. ExPASy Swiss-Prot
Match: Q6ID77 (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana OX=3702 GN=MED11 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.5e-45
Identity = 82/111 (73.87%), Postives = 100/111 (90.09%), Query Frame = 0 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP   NTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]
BLAST of CsaV3_4G031690 vs. ExPASy TrEMBL
Match: A0A1S3B5G7 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 GN=LOC103486032 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.8e-60
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTIDDYQVK+EDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]
BLAST of CsaV3_4G031690 vs. ExPASy TrEMBL
Match: A0A6J1EPJ1 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111434405 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 112/118 (94.92%), Postives = 115/118 (97.46%), Query Frame = 0 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTID+YQVK+EDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS 118

[Close]
BLAST of CsaV3_4G031690 vs. ExPASy TrEMBL
Match: A0A6J1CKY4 (Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX=3673 GN=LOC111012572 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.8e-58
Identity = 111/118 (94.07%), Postives = 115/118 (97.46%), Query Frame = 0 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTID+YQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 118

[Close]
BLAST of CsaV3_4G031690 vs. ExPASy TrEMBL
Match: A0A0A0L450 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=3659 GN=MED11 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.9e-58
Identity = 118/140 (84.29%), Postives = 118/140 (84.29%), Query Frame = 0 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 60
           MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 61  -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 119
                              DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

[Close]
BLAST of CsaV3_4G031690 vs. ExPASy TrEMBL
Match: A0A6J1I6T5 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111471674 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 109/118 (92.37%), Postives = 113/118 (95.76%), Query Frame = 0 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYM+ KLDGMKQTID+YQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQVKMEDA 118

[Close]
BLAST of CsaV3_4G031690 vs. TAIR 10
Match: AT3G01435.1 (Expressed protein )

HSP 1 Score: 181.8 bits (460), Expect = 3.2e-46
Identity = 82/111 (73.87%), Postives = 100/111 (90.09%), Query Frame = 0 

Query: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP   NTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

The following BLAST results are available for this feature:
BLAST of CsaV3_4G031690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144648.11.5e-61100.00mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus] >XP_011... [more]
XP_008442051.13.7e-6097.46PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]... [more]
XP_022927640.14.5e-5894.92mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita mos... [more]
XP_022142440.15.9e-5894.07mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP... [more]
XP_023520392.11.0e-5794.07mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pep... [more]
BLAST of CsaV3_4G031690 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6ID774.5e-4573.87Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana O... [more]
BLAST of CsaV3_4G031690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B5G71.8e-6097.46Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 G... [more]
A0A6J1EPJ12.2e-5894.92Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=... [more]
A0A6J1CKY42.8e-5894.07Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX... [more]
A0A0A0L4504.9e-5884.29Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=365... [more]
A0A6J1I6T51.2e-5692.37Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=36... [more]
BLAST of CsaV3_4G031690 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G01435.13.2e-4673.87Expressed protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.3490coord: 7..75
e-value: 1.1E-6
score: 31.0
NoneNo IPR availablePANTHERPTHR22890:SF2MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 11coord: 1..114
IPR019404Mediator complex, subunit Med11PFAMPF10280Med11coord: 8..102
e-value: 1.1E-13
score: 51.8
IPR019404Mediator complex, subunit Med11PANTHERPTHR22890UNCHARACTERIZEDcoord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G031690.1CsaV3_4G031690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0016592 mediator complex
molecular_function GO:0003712 transcription coregulator activity