CsaV3_4G031450 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G031450
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionArabinogalactan peptide 23-like
Locationchr4: 21889466 .. 21889642 (+)
RNA-Seq ExpressionCsaV3_4G031450
SyntenyCsaV3_4G031450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTTTGCCTGCGCCGCTTTCATCACTGTTGCCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCGTCCCCAGCACCCGGCCCATCTAGCGCTGCTTCCGCTACTTTGCCAGTCGTCGGGACGTTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

mRNA sequence

AACTTTGCCTGCGCCGCTTTCATCACTGTTGCCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCGTCCCCAGCACCCGGCCCATCTAGCGCTGCTTCCGCTACTTTGCCAGTCGTCGGGACGTTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

Coding sequence (CDS)

AACTTTGCCTGCGCCGCTTTCATCACTGTTGCCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCGTCCCCAGCACCCGGCCCATCTAGCGCTGCTTCCGCTACTTTGCCAGTCGTCGGGACGTTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

Protein sequence

NFACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ*
Homology
BLAST of CsaV3_4G031450 vs. NCBI nr
Match: KAE8649766.1 (hypothetical protein Csa_011936, partial [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 3.9e-18
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  NFACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 59
          NFACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ
Sbjct: 1  NFACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 58

BLAST of CsaV3_4G031450 vs. NCBI nr
Match: KAA0035760.1 (arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 3.6e-16
Identity = 54/58 (93.10%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1  NFACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 59
          NFACAAFI V ASLSMVLASDEAASPAPGPSS  SATLPVVGTLLGASAASLIAYCLQ
Sbjct: 5  NFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYCLQ 62

BLAST of CsaV3_4G031450 vs. NCBI nr
Match: KAG6603249.1 (Fructokinase-like 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 1   NFACAAFITV--AASLSMVLASDEAASPAPGPSS-AASATLPVVGTLLGASAASLIAYCL 59
           NFA AA + +  AASL+M LAS E A+PAPGPSS AA+AT+PVVGTLLGAS ASLIA+CL
Sbjct: 580 NFASAAIVAIAAAASLTMALASTEVAAPAPGPSSAAAAATVPVVGTLLGASVASLIAFCL 639

BLAST of CsaV3_4G031450 vs. NCBI nr
Match: PNT29922.1 (hypothetical protein POPTR_006G056200 [Populus trichocarpa])

HSP 1 Score: 57.0 bits (136), Expect = 6.4e-05
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 6  AFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 59
          A + VAAS+S  LA+DE ++PAP P+S ASATLPVVG+L+GAS  S  AY LQ
Sbjct: 9  AVLVVAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYYLQ 61

BLAST of CsaV3_4G031450 vs. NCBI nr
Match: KCW90250.1 (hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis])

HSP 1 Score: 56.6 bits (135), Expect = 8.3e-05
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 0

Query: 6  AFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 59
          A +  AAS+S VLASD++ +PAPGPSS ASA LPV G+L+GAS  S  AY LQ
Sbjct: 42 AVLVAAASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYYLQ 94

BLAST of CsaV3_4G031450 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 5.1e-05
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 3  ACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCL 58
          AC   +  AAS++ V+A++E  +PAPGP+SAASA LP +G+L+GAS  SL +Y L
Sbjct: 7  ACGV-LFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

BLAST of CsaV3_4G031450 vs. ExPASy TrEMBL
Match: A0A5D3E271 (Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001050 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 54/58 (93.10%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1  NFACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 59
          NFACAAFI V ASLSMVLASDEAASPAPGPSS  SATLPVVGTLLGASAASLIAYCLQ
Sbjct: 5  NFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYCLQ 62

BLAST of CsaV3_4G031450 vs. ExPASy TrEMBL
Match: A0A2K1ZXB0 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.1e-05
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 6  AFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 59
          A + VAAS+S  LA+DE ++PAP P+S ASATLPVVG+L+GAS  S  AY LQ
Sbjct: 9  AVLVVAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYYLQ 61

BLAST of CsaV3_4G031450 vs. ExPASy TrEMBL
Match: A0A059DIY4 (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02403 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-05
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 0

Query: 6  AFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 59
          A +  AAS+S VLASD++ +PAPGPSS ASA LPV G+L+GAS  S  AY LQ
Sbjct: 42 AVLVAAASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYYLQ 94

BLAST of CsaV3_4G031450 vs. ExPASy TrEMBL
Match: A0A2P5CAP7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.3e-05
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0

Query: 6  AFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCL 58
          A I  AASLS V+A++E  +PAPGPSS ASATLPVVG+L+GAS  S  AY L
Sbjct: 48 AVIVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYYL 99

BLAST of CsaV3_4G031450 vs. ExPASy TrEMBL
Match: A0A2P5F1L3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_125020 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.3e-05
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0

Query: 6  AFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCL 58
          A I  AASLS V+A++E  +PAPGPSS ASATLPVVG+L+GAS  S  AY L
Sbjct: 48 AVIVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYYL 99

BLAST of CsaV3_4G031450 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 47.8 bits (112), Expect = 3.6e-06
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 3  ACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCL 58
          AC   +  AAS++ V+A++E  +PAPGP+SAASA LP +G+L+GAS  SL +Y L
Sbjct: 7  ACGV-LFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649766.13.9e-18100.00hypothetical protein Csa_011936, partial [Cucumis sativus][more]
KAA0035760.13.6e-1693.10arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinoga... [more]
KAG6603249.11.6e-0872.13Fructokinase-like 2, chloroplastic, partial [Cucurbita argyrosperma subsp. soror... [more]
PNT29922.16.4e-0562.26hypothetical protein POPTR_006G056200 [Populus trichocarpa][more]
KCW90250.18.3e-0562.26hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis][more]
Match NameE-valueIdentityDescription
Q8S2W45.1e-0552.73Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A5D3E2711.7e-1693.10Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A2K1ZXB03.1e-0562.26Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200 PE=4 ... [more]
A0A059DIY44.0e-0562.26Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02... [more]
A0A2P5CAP75.3e-0565.38Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE... [more]
A0A2P5F1L35.3e-0565.38Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_125020 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT3G57690.13.6e-0652.73arabinogalactan protein 23 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34672:SF11SUBFAMILY NOT NAMEDcoord: 3..58
IPR044702Arabinogalactan protein 23/40PANTHERPTHR34672POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102coord: 3..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G031450.1CsaV3_4G031450.1mRNA