CsaV3_4G030110 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G030110
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 19861164 .. 19861437 (-)
RNA-Seq Expression	CsaV3_4G030110
Synteny	CsaV3_4G030110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGATTACATGTATCCAAGTGAAACATCAAGTGGTAGGCAATCACCCTATGGTTGTGTTGGAAGTTTCACAAAGACCTCGAAGCCGAGATGGTTGAGGCATCTAAGCAAGGGGGGTACGCATTGAAAAATGCTAAGGGCTACACGGCCAAAGAATCTCAAACAAGTGTTGTGCGGCCTAGTGAATTCTAAACATTAAATGCCAAGAGCCCTTGCCACATGATGAGCATGAGTTGGATTACAGAAGACTAGAGATTCGTAAAGCAAGTTAA

mRNA sequence

ATGAGAGATTACATGTATCCAAGTGAAACATCAAGTGGTAGGCAATCACCCTATGGTTGTGTTGGAAGTTTCACAAAGACCTCGAAGCCGAGATGGTTGAGGCATCTAAGCAAGGGGGAGCCCTTGCCACATGATGAGCATGAGTTGGATTACAGAAGACTAGAGATTCGTAAAGCAAGTTAA

Coding sequence (CDS)

ATGAGAGATTACATGTATCCAAGTGAAACATCAAGTGGTAGGCAATCACCCTATGGTTGTGTTGGAAGTTTCACAAAGACCTCGAAGCCGAGATGGTTGAGGCATCTAAGCAAGGGGGAGCCCTTGCCACATGATGAGCATGAGTTGGATTACAGAAGACTAGAGATTCGTAAAGCAAGTTAA

Protein sequence

MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS*

Homology

[Close]

BLAST of CsaV3_4G030110 vs. NCBI nr
Match: KGN54762.1 (hypothetical protein Csa_012544 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS 60
          MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS
Sbjct: 1  MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS 60

[Close]

BLAST of CsaV3_4G030110 vs. ExPASy TrEMBL
Match: A0A0A0L2C4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G456180 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS 60
          MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS
Sbjct: 1  MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS 60

The following BLAST results are available for this feature:

BLAST of CsaV3_4G030110 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54762.1	2.8e-27	100.00	hypothetical protein Csa_012544 [Cucumis sativus]	[more]

BLAST of CsaV3_4G030110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G030110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2C4	1.3e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G456180 PE=4 SV=1	[more]

BLAST of CsaV3_4G030110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G030110.1	CsaV3_4G030110.1	mRNA