CsaV3_4G029930 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G029930
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRibosome biogenesis protein
Locationchr4: 19669356 .. 19675277 (+)
RNA-Seq ExpressionCsaV3_4G029930
SyntenyCsaV3_4G029930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGCTTTAGCAATTTGTTCGTAATTTTCGATTTCACGCTTAAGAGTTTTAATTTCACGCCGCCTCAATCATCTCTCTCTAACTCACCTTCTCGTTTCGGGCTCTCATCTCACGCCGTCGCCGGCGTTCAATCTCTCTCCTTCTCAGTCTTCGGTCGTCTCTCCTTCTCAGAAGTCTCTCAATCTCCCATCTTTCAATCTCCGATCGTCGCTCGCGCTCGGCTCTCTCTCACCATGGCGTTGCAGGACTAACCAATCGGATTATTTTTCTCAAGGTAAATAACTTTTTGCTCCAGTTGGAACTTTTGGATGACATTTATGACCATATTTGAACAAGATCTATTCTATTGATTGTAGACATTTTGCCTTTGCTTTGGTAGTTTTATCATTTATTATCTATTGGGTTTCATTCCACTTTGTTTGAGAGGGGAGATTGGGAAAAACATTAAGTCAAATTGTCTTCGAAACTTACACTCTTATTTTCACTTAAAATAATGCAACCCGATGACCCAACCCAAGAAATAATGTTTGAGGCAGGATCACTATATTTTGAAAGATTGTATTTAGTAAGTATTTAGGAAGCATCTTAAGAGTTTGATAGAAACAATCATAATTTTTAAGTTGTTTTCATGGTCAAAGTGTCACACATAGAGTTGTAATTTGTAGTTGGTTATGAGTTTAAAAGTCACATTTAAGATACTTTTTAGGTTGGTTCGAGAGTAAAATGTATCACTTACACATTTTAAAGTTATGTTGAGATTTGATTCACAGTTTTACGTTGGTTGATTTTTGAAGGCATACTTAAGTATTTTAAAATTGTTTTGAGAGTTAAGTGTCACTTATACACTTTTAACCTTTTTGGCTTCAGCTATCACATTGACTTTGTTCGGAAAAGTATTTCTTTTCCACTCGGTCACAACTTGGAGTTTTTGAATTAAAGTTTAAGGTTATTTTGGTCGAGAACATTCCCTCTGAACCTTTTTGGTTTCAGCTGAGGTTTTCAACGAAATTATAATATTAAAATCTCGTTCTTATTGTTTTAGGGACATATCCAATAGTTTAGTAGCTGTTTAGGACGTCTAGTAAGTAGAATTCTACTTGCCGAAATTTTTTGTTGTGTCTTAGCATACTTCATGTTTTACTTATTTCATTAGAGTATATGCTTTATGATGATTTTTGAGCTGAATGTGTGATAGATACCTACATTTAGATAGGGCTAAGGGTAGTTAGTTATATAAGGCAGTTAGATGGTTATAAATAGGGAGGTGGGGAGGGAAGAAGGGCATGAAGAATTTGGTGAAGTTAATGGGCTGCAACACTCCTTGAAAGAAAGGAAGGGCAGAGGGTTAGGGTTTTTTTACTTGTTTGTTCTTTAATATTGTAATTTTCTGTTTGAGATATCAATAAAAGAGAAACACTATATCAGTGTTCTATCAATGTGTTGCTGTGATTTTGGATGTTAAAGCATGATGAGTTGTTAAGTAGAATTCTACTTGCCGAATTTTTTTGTTGCGTCTTAGCATACTTCATTAGAGTATGCTTCATATGCTTTATGATGATTTTCGAGCTGAATGTGTTGCTGTGATTTTGGATGTTAAAGCATGATGAGTTGTTAAGTTACAAGAGTATTGTGGTGATGAACATACTTATATGTTGACTTTTTTGGGAAAAGTATAACTTCTTTTAAGTTGTCACTGAGTGTGTGTTTAAATGTGATAATAAAGTATAGTCTAAGTCTAGAAGGCATGTTTAGGTTATGCAGGGCAGCCTATTTAGTGTTAGTTTGGGGTATGGGTATTTGTTAAGCCCCCAATCATCCACACGTACCAGAGAAAGGGAAAACGAGGAAAAATGGGGAGTATTGGTACGGAAGTGAATGTTGGCACAAAAATAAATGGTTACTCGAGCGGGGGCCATCTTTGAGGGGTTTATGAGTGGTTTTGGAAATTATTTTGAGGTTTGATCATTTTGGAAGCTCTTGAGACTTTTGGAGAGGGACGCAGCTCTTGAATTCTGCCCTATCTTCTCTTTATGTTTTTCTTCCTTCTTGTTCTTAGTCTTGTGCTGTGTTCTTGCTTTATATGAGTATTTGAGATTACCTTGTAGTTGTTGGACATTTTTCATTGAATATCATCTTCTGAAGTGATTGTTACTGTTTAGAGTTCTTGTTGGGTATTTTTCTGAGTGCAGGGAAGTCAATACTTAACAGTATTTTGATTGTGTTTGTAAATTGTAATGGTTGCTTTGCTATATATCCCACACCTTGTCCTCAAGGTGTGTTTGAAGGGCGATATAATGTGAGGTTTGATCATTTTGGAAGCTCTTGAGACTTTTGGAGAGGGACGCAGCTCTTGAATTCTGCCCTATCTTCTCTTTATGTTTTTCTTCCTTCTTGTTCTTAGTCTTGTGCTGTGTTCTTGCTTTATATGAGTATTTGAGATTACCTTGTAGTTGTTAGACATTTTTCATTGAATATCATCTTCTGAAGTGATTGTTACTGTTTAGAGTTCTTGTTGGGTATTTTTCTGAGTGCAGGGAAGTCAATACTTAACAGTATTTTGATTGTGTTTGTAAATTGTAATGGTTGCTTTGCTATATATCCCACACCTTGTCCTCAAGGTGTGTTTGAAGGGCGATATAATGTGAGGGTACTAATATGCTAAGCTTCAACACAACCTGCAAAACTAATAAAACCAGAACACATAACAACCAGAATTCTGGGAGGAAGCTATTGTATTGAATTCTTTCAACACCACAAAATAGTTCTTCAAATGATACCAGCCAAATAAGAGGGCTGTCCTCTCCCTAATGAACAGAGTTCATTCAAAATACATAACAAAGATGATAACCAACCCTAGTACAAAACACCCACATATATATTCCCTCCCCTTTTCTGCCACATTGTTCTAGGATCACTGACCTCTCTAACTAGTAACTACCATGTTGTCTATGTGGAATTTCCCTTTTTACACTTCTTCTTATACACTTGAGTAACGGGTGACCTAGCATAATAGTGGTACTTTTGGAACAGTAGTAGAGTAAGGGTGTAATGGTAATTAGATAGAGGTAGTTTCGTTATAAATAGGAGTTAGGTTTTGTAGGAAGGGAGGTCATATTTTGGTAGGTTAGTCCATGGCGGGTTGATCGTGGGAGAAAGACAACCCTCTCGAAAGGCTATTAACATACATTATTATTTTTTCATTGATGCTGCAATGCTATCTTTTGTGTTTTTCATATATTTTTCTGTGTTGGATACCCAACACTTTAGTTTATACTTTGAGATCCTAATATGATCCTACTTTGTGATCTAAGCGCAGAAGTTTTTGATTTGAGGAAATTCCATCTTTTGATTCAAGTAATCAGAAAACTCACAAGTTGTTATTATGGGCAAACCAGTCTCCCGGTAAGGCCGTATTCTTTGAGTTATCTTCTCTTATGTGTAGCTTCTTATTTCGTTTTCATCAATCCTAAGTTTCTTTATCCATTGTCCATGAAGGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAGTGAGTTCGGATTTCTGACATTAACTTGATGGTGTTTGTTCCATAAGTTGCTTCACTGTCCTTGTTTCAAAAAACTATTCATCTATTGATTCTATCTGATTTGAAATAACTGGAGCTTCTCTTTTAAAGAAATATTATTTGAATACAGAAATATAGATTAACAAATGACAAAACATATTTGATTGCATACTGCTAATGTGATGCAAATTGCAAAAAATGCAGACCTAAATTGGCCACCTAGTGCAGGTTATCAAAAGAATACAGGCCTAATTTTACTTCAGTTGTCAGTTTTCATTCTAAAACTTGTTCTAGTACTTTTTCAAAGCAAATACCAATGTGTTTCAGTTGATTTTTTGATTTCCGAATAAATGAAAGGTCACCTTTCAGAATTGCCAATCAAGTTATATTTCAATACCATTTTGTTGTTTAGTATCTTCAATTTAACTCTAGGGATGTTTATTTTCATTTTTGAGCGTTGTTTCTGGTATCATAAACAATTACATGTTAAATCTGGCCACATGCAGGAGTTGGAGAAACTATTACTACCTTGAATGCTCAAAAGAGTATTACTAAGGTAAAATTAGATATTCATTCTATTACTTTGCGGCTCTATATTTCCTCACTAATTATGGCCATTCAGTTTTCTTATTATTCCTTTTCATTTTTGTCATTGATGGCTTTTAATACTCTTCCTTTTTTATTATGTGAATAGTTCTCGAACAATCTTTTGTTTCTCCTTTTTATCTTTTAAACTAACTGTAGCTATAATCTTGTACGACATAAGCACAATCAACCTCATGTATCCATTATAGTTAGTGCCATCTAATAATAGTTTGTGTCAAAGTTAAGCCAAGCTTTTTTTTAATATGACCAAACGTTAGAAGGTTATACATTAATCATGGAACCACATAAACACCTATATGAGCTCTGTCAACTTTATGCTCTGTACATAATATATAGATAAAACCAATATAATACTAATAATTGCATGAGTCCTAGGTTTAGATCTCATGCATTTATTTTTAATTTTTCCTTCATTGATATAAATCCTCCTGCCAATAAAATTTATTTATCCGTCACTACACATAAACATAGTTACAAGGGTTTATTGGTATACCCTGAAAATTTCATCCTCTACTATGATGAATTTGACGTGGAGTGCTTCAATCTTTCTACTTTACTTTTAAATTTTAACATTTGAAAATAGTCATTTTAGTTACTAGCATAATTGCTGGTTCAATAATATGAAGTGATTGTCAATAACGAGGAACTTAGGAATTGGCTATAGTTAGAATAGGAGCATTTTGATTGGTTCAGTGTTCTAATTCCTTGTACAAAGTATCCCCCTCCCCCTCAAACCCCCCCCAAAAAAAAAAAAAAGAAAAAGGAGAGAGAATAATTGATGCATTTTTTGTCACCATGCTTTCATTTTGCTCTTTTAGTAATATTCTAAAGTTGAATATATGTAACAGAAGAAAAACCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGAGTTTCTTCCTGGATTGGAGGCGACAAAACAAAAACCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAATTCATGTAGGTTGCTTGTTACTTGTTAGCAATTATTTGACATGTTTTACAATTTATCCTTATTTTATGCATTATTGTAATGATGGTTCATTTTATCAGATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGGCAGACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAATTGAGGAACCGAAGAAAAAGAAAATGAATAAAAATGGGAGCAAAAAAAGGAAAGAGAAGAAGTCAAAAGCCTCGGCAAAACCTTCATCTATGGAGATGTGACTAATCTTCTTTTGCCATGTAAGCCTCTTTGGTAAATACTTACATGCTCATTTTGATCCGTGAGATTAACTTGTTTGTTATCATTAACAAGTTGATCTCGCTTGAGCTTTGAATTTTCTCCTGGAATCAGATTCCGGTAGGCAATTCTTGTTTTTGAATGCATAGGCAACCCACCTTCATTTTGTTTGTTTATAGATAGGAGCAGCTCCCCTGCAAACATTGTCATGATATTTTAAATATTATCTTTGACTGAAATAATGGTCTATTTCTTCTTCTATAAAAGTACAAAAAAAAGAATAAAAAATCAAAAGGTCTAATGTACAAATAATTCTTCACCCTCTCTATCAAACTAGAAAGAAAAGAAGAATTGGGTGGTATAAGGTTTGTAAGTTGGTATTCTCCTCATTTCCTTCAATAATTATGTTTACATAGCTAATTATCACCCAATTCCAATA

mRNA sequence

ATGGGCAAACCAGTCTCCCGGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTACTACCTTGAATGCTCAAAAGAGTATTACTAAGAAGAAAAACCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGAGTTTCTTCCTGGATTGGAGGCGACAAAACAAAAACCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAATTCATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGGCAGACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAATTGAGGAACCGAAGAAAAAGAAAATGAATAAAAATGGGAGCAAAAAAAGGAAAGAGAAGAAGTCAAAAGCCTCGGCAAAACCTTCATCTATGGAGATGTGA

Coding sequence (CDS)

ATGGGCAAACCAGTCTCCCGGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTACTACCTTGAATGCTCAAAAGAGTATTACTAAGAAGAAAAACCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGAGTTTCTTCCTGGATTGGAGGCGACAAAACAAAAACCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAATTCATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGGCAGACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAATTGAGGAACCGAAGAAAAAGAAAATGAATAAAAATGGGAGCAAAAAAAGGAAAGAGAAGAAGTCAAAAGCCTCGGCAAAACCTTCATCTATGGAGATGTGA

Protein sequence

MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM*
Homology
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BLAST of CsaV3_4G029930 vs. NCBI nr
Match: XP_004144346.1 (putative ribosome biogenesis protein slx9-like [Cucumis sativus] >KGN54744.1 hypothetical protein Csa_012867 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 2.9e-76
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS 60
           MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS
Sbjct: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS 60

Query: 61  TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL 120
           TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL
Sbjct: 61  TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL 120

Query: 121 EGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 159
           EGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
Sbjct: 121 EGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 158

[Close]
BLAST of CsaV3_4G029930 vs. NCBI nr
Match: KAA0037498.1 (putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa] >TYK01973.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 153/158 (96.84%), Postives = 155/158 (98.10%), Query Frame = 0 

Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS 60
           MGKPVSRSDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLS
Sbjct: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLS 60

Query: 61  TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL 120
           TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL
Sbjct: 61  TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL 120

Query: 121 EGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 159
           EGTQP EEPKKKKMNKNGSKKRKEKK KASA+PSSMEM
Sbjct: 121 EGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM 158

[Close]
BLAST of CsaV3_4G029930 vs. NCBI nr
Match: XP_038900086.1 (putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900087.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900088.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900089.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900091.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida])

HSP 1 Score: 274.2 bits (700), Expect = 6.9e-70
Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 0 

Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS 60
           MGKPVSRSD KSKAERKFEKKVQFYERVGETI+TLNAQK+ITKKK+HRRRKRDLKAFDLS
Sbjct: 1   MGKPVSRSDSKSKAERKFEKKVQFYERVGETISTLNAQKTITKKKSHRRRKRDLKAFDLS 60

Query: 61  TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL 120
           TLSEFLPGLEA KQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRA+QLHL
Sbjct: 61  TLSEFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAIQLHL 120

Query: 121 EGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 159
           EGTQPIEEP KKK NKNGSKKRKEKKSKAS +PSSMEM
Sbjct: 121 EGTQPIEEP-KKKTNKNGSKKRKEKKSKASPRPSSMEM 157

[Close]
BLAST of CsaV3_4G029930 vs. NCBI nr
Match: KAA0062508.1 (putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa])

HSP 1 Score: 273.9 bits (699), Expect = 9.0e-70
Identity = 146/153 (95.42%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 6   SRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEF 65
           ++SDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEF
Sbjct: 214 NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEF 273

Query: 66  LPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQP 125
           LPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQP
Sbjct: 274 LPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQP 333

Query: 126 IEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 159
           IEEPKKKK+NKNGSKKRKEKKSKA A+PSSMEM
Sbjct: 334 IEEPKKKKINKNGSKKRKEKKSKALARPSSMEM 366

[Close]
BLAST of CsaV3_4G029930 vs. NCBI nr
Match: XP_038883686.1 (putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida] >XP_038883687.1 putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida] >XP_038883688.1 putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida])

HSP 1 Score: 260.4 bits (664), Expect = 1.0e-65
Identity = 141/158 (89.24%), Postives = 150/158 (94.94%), Query Frame = 0 

Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS 60
           MGKPVSRSD KSKAERKFEKKVQFYERVGETI+TLNAQK+I+KKK++RRRKRDLKAFDLS
Sbjct: 1   MGKPVSRSDSKSKAERKFEKKVQFYERVGETISTLNAQKTISKKKSYRRRKRDLKAFDLS 60

Query: 61  TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL 120
            LSEFLPGL A KQKPSAAE KLNCKSRLKF+LKERKQM TVLNHPVFQADPLRA++LHL
Sbjct: 61  ILSEFLPGL-APKQKPSAAESKLNCKSRLKFMLKERKQMSTVLNHPVFQADPLRAIRLHL 120

Query: 121 EGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 159
           EGTQPIEEPKKKK NKNGSKKRKEKKS ASA+PSSMEM
Sbjct: 121 EGTQPIEEPKKKKTNKNGSKKRKEKKSNASARPSSMEM 157

[Close]
BLAST of CsaV3_4G029930 vs. ExPASy TrEMBL
Match: A0A0A0L113 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G442590 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS 60
           MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS
Sbjct: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS 60

Query: 61  TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL 120
           TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL
Sbjct: 61  TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL 120

Query: 121 EGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 159
           EGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
Sbjct: 121 EGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 158

[Close]
BLAST of CsaV3_4G029930 vs. ExPASy TrEMBL
Match: A0A5D3BQL6 (Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00780 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.5e-74
Identity = 153/158 (96.84%), Postives = 155/158 (98.10%), Query Frame = 0 

Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS 60
           MGKPVSRSDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLS
Sbjct: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLS 60

Query: 61  TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL 120
           TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL
Sbjct: 61  TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL 120

Query: 121 EGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 159
           EGTQP EEPKKKKMNKNGSKKRKEKK KASA+PSSMEM
Sbjct: 121 EGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM 158

[Close]
BLAST of CsaV3_4G029930 vs. ExPASy TrEMBL
Match: A0A5A7V4K7 (Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G001080 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.3e-70
Identity = 146/153 (95.42%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 6   SRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEF 65
           ++SDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEF
Sbjct: 214 NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEF 273

Query: 66  LPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQP 125
           LPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQP
Sbjct: 274 LPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQP 333

Query: 126 IEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 159
           IEEPKKKK+NKNGSKKRKEKKSKA A+PSSMEM
Sbjct: 334 IEEPKKKKINKNGSKKRKEKKSKALARPSSMEM 366

[Close]
BLAST of CsaV3_4G029930 vs. ExPASy TrEMBL
Match: A0A6J1E5M8 (putative ribosome biogenesis protein slx9-like OS=Cucurbita moschata OX=3662 GN=LOC111430153 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.1e-60
Identity = 130/158 (82.28%), Postives = 141/158 (89.24%), Query Frame = 0 

Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS 60
           MGKP SRSD KSKAERKFEKK+QFYERVGETI TLNAQK+ITKKK  RRRKRDLKAFDL+
Sbjct: 1   MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKKK-LRRRKRDLKAFDLT 60

Query: 61  TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL 120
            LSEFLPGL+A KQK S  ELK+NCKSRLKF+LKE KQMGTVLNHP FQADPL A+ LHL
Sbjct: 61  ALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGTVLNHPAFQADPLGAIHLHL 120

Query: 121 EGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 159
           + TQP+EE KKKK N+NGSKKRKEKKSKA+AKPSSMEM
Sbjct: 121 QSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

[Close]
BLAST of CsaV3_4G029930 vs. ExPASy TrEMBL
Match: A0A6J1JDX4 (putative ribosome biogenesis protein slx9-like OS=Cucurbita maxima OX=3661 GN=LOC111484925 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 130/158 (82.28%), Postives = 140/158 (88.61%), Query Frame = 0 

Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS 60
           MGKP SRSD KSKAERKFEKK+QFYERVGETI TLNAQK+ITKKK  RRRKRDLKAFDL+
Sbjct: 1   MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKKK-LRRRKRDLKAFDLT 60

Query: 61  TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL 120
            LSEFLPGL+  KQK S  ELK+NCKSRLKF+LKE KQMGTVLNHP FQADPL A+ LHL
Sbjct: 61  ALSEFLPGLKTPKQKTSDTELKVNCKSRLKFVLKETKQMGTVLNHPAFQADPLGAIHLHL 120

Query: 121 EGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 159
           E TQP+EE KKKK N+NGSKKRKEKKSKA+AKPSSMEM
Sbjct: 121 ESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

[Close]
BLAST of CsaV3_4G029930 vs. TAIR 10
Match: AT2G01640.1 (unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 137.9 bits (346), Expect = 7.1e-33
Identity = 79/153 (51.63%), Postives = 106/153 (69.28%), Query Frame = 0 

Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS 60
           MGKP   S+V +K+++KFEKK+QFY +V +T+T+L+ QK I KKK  R R++ LKA+DL+
Sbjct: 1   MGKPSKGSEVTTKSDKKFEKKLQFYTKVKDTVTSLSVQKEIGKKKKIRSRQKKLKAYDLT 60

Query: 61  TLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLH 120
            LSEFLP   A  K    A ELK+NCK R K +L E +++  VL+HP FQADP+ ++  H
Sbjct: 61  NLSEFLPEFNALQKSALPAPELKMNCKRRQKLVLTEGERLNKVLDHPAFQADPVGSIFQH 120

Query: 121 LEGTQ-PIEEPKKKKMNKNGSKKRKEKKSKASA 152
           L   Q P+EE  KKK N NGSKKR +KK K  +
Sbjct: 121 LLSQQPPVEEKPKKKTNTNGSKKRNKKKGKTDS 153

[Close]
BLAST of CsaV3_4G029930 vs. TAIR 10
Match: AT2G01640.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 137.9 bits (346), Expect = 7.1e-33
Identity = 79/153 (51.63%), Postives = 106/153 (69.28%), Query Frame = 0 

Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS 60
           MGKP   S+V +K+++KFEKK+QFY +V +T+T+L+ QK I KKK  R R++ LKA+DL+
Sbjct: 1   MGKPSKGSEVTTKSDKKFEKKLQFYTKVKDTVTSLSVQKEIGKKKKIRSRQKKLKAYDLT 60

Query: 61  TLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLH 120
            LSEFLP   A  K    A ELK+NCK R K +L E +++  VL+HP FQADP+ ++  H
Sbjct: 61  NLSEFLPEFNALQKSALPAPELKMNCKRRQKLVLTEGERLNKVLDHPAFQADPVGSIFQH 120

Query: 121 LEGTQ-PIEEPKKKKMNKNGSKKRKEKKSKASA 152
           L   Q P+EE  KKK N NGSKKR +KK K  +
Sbjct: 121 LLSQQPPVEEKPKKKTNTNGSKKRNKKKGKTDS 153

The following BLAST results are available for this feature:
BLAST of CsaV3_4G029930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144346.12.9e-76100.00putative ribosome biogenesis protein slx9-like [Cucumis sativus] >KGN54744.1 hyp... [more]
KAA0037498.11.3e-7396.84putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa] >TYK01... [more]
XP_038900086.16.9e-7093.67putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900087... [more]
KAA0062508.19.0e-7095.42putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa][more]
XP_038883686.11.0e-6589.24putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida] >X... [more]
BLAST of CsaV3_4G029930 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1131.4e-76100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G442590 PE=4 SV=1[more]
A0A5D3BQL66.5e-7496.84Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A5A7V4K74.3e-7095.42Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A6J1E5M83.1e-6082.28putative ribosome biogenesis protein slx9-like OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1JDX44.1e-6082.28putative ribosome biogenesis protein slx9-like OS=Cucurbita maxima OX=3661 GN=LO... [more]
BLAST of CsaV3_4G029930 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G01640.17.1e-3351.63unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bac... [more]
AT2G01640.27.1e-3351.63unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028160Ribosome biogenesis protein Slx9-likePFAMPF15341SLX9coord: 11..122
e-value: 2.3E-9
score: 37.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..158
NoneNo IPR availablePANTHERPTHR31109PROTEIN FAM207Acoord: 7..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G029930.1CsaV3_4G029930.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component GO:0030686 90S preribosome
cellular_component GO:0005730 nucleolus
cellular_component GO:0030688 preribosome, small subunit precursor