Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTCAACACAAACCATTGGTCTTCAAGAAACCAACAATGAGGAGGAATCTGTTGACAACACTTATCGAGATGAACCTGAATTTTTGGAACCAGATGAAGGCGACCAACTTTCTTGTGTGCTTCGACATGTCCTTATCACACCAAAGACTGAAAATCTTTGTCAAGTGGTTATAGACAGTGGCAGTGTGGATAATATTGCGTCCAAGAAATTGATTACGGCCCTCAAACTCATAGCAGACCCACACCCCAATGCCTTCAAAGCTAATTGGATAACAAAGAAAGGAGAGACTACCATCAAAGAAATTTGCACTATTCCTCTCTCCATTGGTAATCTCTATGAAGATCAACTTGTTTGTGATGTCCTAGAAATGGATGTTTGTCTCTTACTTCTCGGCCTCCCTTGGAAATATTACAACAATGTTACACATAATGGCCGTGAAAACACTTGTAAATTTACTTGGATTGCAAAAATGTTGTTCTTCTTTCCCTCGGCTCTTCCATTTCTTCACAAAAGGTACACGTCCTCGTCTAAACCTCTTTTTCTTTGATGCAAAGGTAAATATTTGATTCTTCCTAAAACTCCTTACTTAATAGCCTTTATCACCAAAGAAAATTTTTCCACTTCACATCCCAACCAAGACCTACACCCCCAAGTTTTCCAAATTCTACAAAATTTTCTAGCCCTTTCTAGATGAACCTACTGCCTTACCTCCACTTCGAAACATCCAACATCAAATTGACCTTACCAAACCTTCCCCACTGTAG
mRNA sequence
ATGCCCTCAACACAAACCATTGGTCTTCAAGAAACCAACAATGAGGAGGAATCTGTTGACAACACTTATCGAGATGAACCTGAATTTTTGGAACCAGATGAAGGCGACCAACTTTCTTGTGTGCTTCGACATGTCCTTATCACACCAAAGACTGAAAATCTTTGTCAAGTGGTTATAGACAGTGGCAGTGTGGATAATATTGCGTCCAAGAAATTGATTACGGCCCTCAAACTCATAGCAGACCCACACCCCAATGCCTTCAAAGCTAATTGGATAACAAAGAAAGGAGAGACTACCATCAAAGAAATTTGCACTATTCCTCTCTCCATTGGTAATCTCTATGAAGATCAACTTGTTTGTGATGTCCTAGAAATGGATGTTTGTCTCTTACTTCTCGGCCTCCCTTGGAAATATTACAACAATGTTACACATAATGGCCGTGAAAACACTTATGAACCTACTGCCTTACCTCCACTTCGAAACATCCAACATCAAATTGACCTTACCAAACCTTCCCCACTGTAG
Coding sequence (CDS)
ATGCCCTCAACACAAACCATTGGTCTTCAAGAAACCAACAATGAGGAGGAATCTGTTGACAACACTTATCGAGATGAACCTGAATTTTTGGAACCAGATGAAGGCGACCAACTTTCTTGTGTGCTTCGACATGTCCTTATCACACCAAAGACTGAAAATCTTTGTCAAGTGGTTATAGACAGTGGCAGTGTGGATAATATTGCGTCCAAGAAATTGATTACGGCCCTCAAACTCATAGCAGACCCACACCCCAATGCCTTCAAAGCTAATTGGATAACAAAGAAAGGAGAGACTACCATCAAAGAAATTTGCACTATTCCTCTCTCCATTGGTAATCTCTATGAAGATCAACTTGTTTGTGATGTCCTAGAAATGGATGTTTGTCTCTTACTTCTCGGCCTCCCTTGGAAATATTACAACAATGTTACACATAATGGCCGTGAAAACACTTATGAACCTACTGCCTTACCTCCACTTCGAAACATCCAACATCAAATTGACCTTACCAAACCTTCCCCACTGTAG
Protein sequence
MPSTQTIGLQETNNEEESVDNTYRDEPEFLEPDEGDQLSCVLRHVLITPKTENLCQVVIDSGSVDNIASKKLITALKLIADPHPNAFKANWITKKGETTIKEICTIPLSIGNLYEDQLVCDVLEMDVCLLLLGLPWKYYNNVTHNGRENTYEPTALPPLRNIQHQIDLTKPSPL*
Homology
BLAST of CsaV3_4G029910 vs. NCBI nr
Match:
KAE8649693.1 (hypothetical protein Csa_011978 [Cucumis sativus])
HSP 1 Score: 360.1 bits (923), Expect = 1.0e-95
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 1 MPSTQTIGLQETNNEEESVDNTYRDEPEFLEPDEGDQLSCVLRHVLITPKTENLCQVVID 60
MPSTQTIGLQETNNEEESVDNTYRDEPEFLEPDEGDQLSCVLRHVLITPKTENLCQVVID
Sbjct: 1 MPSTQTIGLQETNNEEESVDNTYRDEPEFLEPDEGDQLSCVLRHVLITPKTENLCQVVID 60
Query: 61 SGSVDNIASKKLITALKLIADPHPNAFKANWITKKGETTIKEICTIPLSIGNLYEDQLVC 120
SGSVDNIASKKLITALKLIADPHPNAFKANWITKKGETTIKEICTIPLSIGNLYEDQLVC
Sbjct: 61 SGSVDNIASKKLITALKLIADPHPNAFKANWITKKGETTIKEICTIPLSIGNLYEDQLVC 120
Query: 121 DVLEMDVCLLLLGLPWKYYNNVTHNGRENTYEPTALPPLRNIQHQIDLTKPSPL 175
DVLEMDVCLLLLGLPWKYYNNVTHNGRENTYEPTALPPLRNIQHQIDLTKPSPL
Sbjct: 121 DVLEMDVCLLLLGLPWKYYNNVTHNGRENTYEPTALPPLRNIQHQIDLTKPSPL 174
BLAST of CsaV3_4G029910 vs. NCBI nr
Match:
XP_031741035.1 (uncharacterized protein LOC116403692 [Cucumis sativus])
HSP 1 Score: 166.0 bits (419), Expect = 2.9e-37
Identity = 79/168 (47.02%), Postives = 105/168 (62.50%), Query Frame = 0
Query: 2 PSTQTIGLQETNNEEESVDNTYRDEPEFLEPDEGDQLSCVLRHVLITPKTE--------- 61
P +TI + E + +E E +E D+G+++SCV++ +LITPK E
Sbjct: 420 PQRKTIAIAEEGGQISEDSIEAEEETELIEADDGERVSCVIQRLLITPKEEKNLQRHCLF 479
Query: 62 --------NLCQVVIDSGSVDNIASKKLITALKLIADPHPNAFKANWITKKGETTIKEIC 121
+C V+IDSGS +N +KKL+T L L A+ HPN +K W+ K GE T+ EIC
Sbjct: 480 KTRCTINGRVCDVIIDSGSSENFVAKKLVTVLNLKAEAHPNPYKIGWVRKGGEATVSEIC 539
Query: 122 TIPLSIGNLYEDQLVCDVLEMDVCLLLLGLPWKYYNNVTHNGRENTYE 153
T+PLSIGN Y+DQ+VCDV+EMDVC LLLG PW+Y H GRENTYE
Sbjct: 540 TVPLSIGNAYKDQIVCDVIEMDVCHLLLGRPWQYDTQSLHKGRENTYE 587
BLAST of CsaV3_4G029910 vs. NCBI nr
Match:
XP_011648447.2 (uncharacterized protein LOC105434464 [Cucumis sativus])
HSP 1 Score: 165.2 bits (417), Expect = 4.9e-37
Identity = 89/227 (39.21%), Postives = 116/227 (51.10%), Query Frame = 0
Query: 2 PSTQTIGLQETNNEEESVDNTYRDEPEFLEPDEGDQLSCVLRHVLITPKTE--------- 61
P +TI + E + DE E +E D+G+++SCV++ VLITPK E
Sbjct: 170 PQRKTIAIAEEGRQMSEDSKGAEDEIELIEADDGERVSCVIQRVLITPKEEKKQQRHCLF 229
Query: 62 --------NLCQVVIDSGSVDNIASKKLITALKLIADPHPNAFKANWITKKGETTIKEIC 121
+C V+ID+ S N +KKL+T L L A+ HP ++K W+ K+GE T+ EIC
Sbjct: 230 KARCTINGRVCDVIIDNDSSKNFVAKKLVTVLNLKAEAHPTSYKIGWVRKEGEATVSEIC 289
Query: 122 TIPLSIGNLYEDQLVCDVLEMDVCLLLLGLPWKYYNNVTHNGRENTY------------- 169
T+PLSI N Y+DQ+VCDV+EMDVC LLLG PW+Y H GRENTY
Sbjct: 290 TVPLSIENAYKDQIVCDVIEMDVCHLLLGRPWQYDTQSLHKGRENTYELQLMGRKVVLLP 349
BLAST of CsaV3_4G029910 vs. NCBI nr
Match:
KAA0054966.1 (transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK22755.1 transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 162.5 bits (410), Expect = 3.2e-36
Identity = 82/169 (48.52%), Postives = 106/169 (62.72%), Query Frame = 0
Query: 2 PSTQTIGLQETNNEEESVD-NTYRDEPEFLEPDEGDQLSCVLRHVLITPKTEN------- 61
P +TI + + N++ + + +E E +E DEGD LSC+L+ VLI+PK EN
Sbjct: 403 PQRKTIAVAKDNDDGSNRSLGEFDEETEVIEADEGDSLSCILQRVLISPKEENQLQRHSL 462
Query: 62 ----------LCQVVIDSGSVDNIASKKLITALKLIADPHPNAFKANWITKKGETTIKEI 121
+C V+IDSGS +N SKKL+TAL L PH +K WI K GET I EI
Sbjct: 463 FKTRCTIQGKVCNVIIDSGSSENFVSKKLVTALNLKTQPHEKPYKIGWIKKGGETLISEI 522
Query: 122 CTIPLSIGNLYEDQLVCDVLEMDVCLLLLGLPWKYYNNVTHNGRENTYE 153
C +PLSIGN Y+DQ+VCDV+EMDVC +LLG PW++ H GRENTYE
Sbjct: 523 CYVPLSIGNSYKDQMVCDVIEMDVCHILLGRPWQFDVQSMHRGRENTYE 571
BLAST of CsaV3_4G029910 vs. NCBI nr
Match:
XP_031744062.1 (uncharacterized protein LOC116404773 [Cucumis sativus])
HSP 1 Score: 159.1 bits (401), Expect = 3.5e-35
Identity = 76/168 (45.24%), Postives = 101/168 (60.12%), Query Frame = 0
Query: 2 PSTQTIGLQETNNEEESVDNTYRDEPEFLEPDEGDQLSCVLRHVLITPKTE--------- 61
P +TI + E + +E E +E D+G+++SC ++ VLI PK E
Sbjct: 252 PQRKTIAIAEEGGQTSEDSIEAEEETELIEADDGERVSCFIQRVLIMPKEEKNLQRHCLF 311
Query: 62 --------NLCQVVIDSGSVDNIASKKLITALKLIADPHPNAFKANWITKKGETTIKEIC 121
+C V+IDSGS +N +KKL+ L L A+ HP +K W+ K GE T+ EIC
Sbjct: 312 KTRCTINGRVCDVIIDSGSSENFVAKKLVIVLNLKAEAHPTPYKIGWVRKGGEATVSEIC 371
Query: 122 TIPLSIGNLYEDQLVCDVLEMDVCLLLLGLPWKYYNNVTHNGRENTYE 153
T+PLSIGN Y+DQ+VCDV+EMDVC LLLG PW+Y H GRENTYE
Sbjct: 372 TVPLSIGNAYKDQIVCDVIEMDVCHLLLGRPWQYDTQSLHKGRENTYE 419
BLAST of CsaV3_4G029910 vs. ExPASy TrEMBL
Match:
A0A5D3DGR0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00870 PE=4 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 1.5e-36
Identity = 82/169 (48.52%), Postives = 106/169 (62.72%), Query Frame = 0
Query: 2 PSTQTIGLQETNNEEESVD-NTYRDEPEFLEPDEGDQLSCVLRHVLITPKTEN------- 61
P +TI + + N++ + + +E E +E DEGD LSC+L+ VLI+PK EN
Sbjct: 403 PQRKTIAVAKDNDDGSNRSLGEFDEETEVIEADEGDSLSCILQRVLISPKEENQLQRHSL 462
Query: 62 ----------LCQVVIDSGSVDNIASKKLITALKLIADPHPNAFKANWITKKGETTIKEI 121
+C V+IDSGS +N SKKL+TAL L PH +K WI K GET I EI
Sbjct: 463 FKTRCTIQGKVCNVIIDSGSSENFVSKKLVTALNLKTQPHEKPYKIGWIKKGGETLISEI 522
Query: 122 CTIPLSIGNLYEDQLVCDVLEMDVCLLLLGLPWKYYNNVTHNGRENTYE 153
C +PLSIGN Y+DQ+VCDV+EMDVC +LLG PW++ H GRENTYE
Sbjct: 523 CYVPLSIGNSYKDQMVCDVIEMDVCHILLGRPWQFDVQSMHRGRENTYE 571
BLAST of CsaV3_4G029910 vs. ExPASy TrEMBL
Match:
A0A5A7U0I8 (Zf-CCHC domain-containing protein/Asp_protease_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00220 PE=4 SV=1)
HSP 1 Score: 149.8 bits (377), Expect = 1.0e-32
Identity = 79/171 (46.20%), Postives = 107/171 (62.57%), Query Frame = 0
Query: 2 PSTQTIGLQETNNEEESVDNTYRD--EPEFLEPDEGDQLSCVLRHVLITPKTE------- 61
P +T+ + E EE+ ++ D + E LEPDEG++LSCVL+ VLI PK++
Sbjct: 24 PKRKTVAILE--EEEDFIEEQEGDFYQEEVLEPDEGERLSCVLQRVLIAPKSDTSHQQRH 83
Query: 62 -----------NLCQVVIDSGSVDNIASKKLITALKLIADPHPNAFKANWITKKGETTIK 121
+C V+IDSGS +N SKKL+TALKL +PH + +K K G+ I
Sbjct: 84 SLFKTRFTIKSKVCNVIIDSGSSENFVSKKLVTALKLKTEPHSSPYK-----KGGDAHIS 143
Query: 122 EICTIPLSIGNLYEDQLVCDVLEMDVCLLLLGLPWKYYNNVTHNGRENTYE 153
EIC++PLSIG Y+DQ+VCD+L+MDVC +LLG PW+Y H GRENTYE
Sbjct: 144 EICSVPLSIGGTYKDQIVCDILDMDVCHILLGKPWQYDVQAIHRGRENTYE 187
BLAST of CsaV3_4G029910 vs. ExPASy TrEMBL
Match:
A0A5A7V4G7 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00370 PE=4 SV=1)
HSP 1 Score: 149.4 bits (376), Expect = 1.4e-32
Identity = 86/213 (40.38%), Postives = 114/213 (53.52%), Query Frame = 0
Query: 2 PSTQTIGLQETNNEEES-VDNTYRDEPEFLEPDEGDQLSCVLRHVLITPKTE-------- 61
P +TI L E + S D ++E E +E D GD++SC+++ VLIT K E
Sbjct: 271 PQRKTIALAEDEDTYMSEADKEEKEEIELIEADNGDRISCIVQRVLITLKEERNPQRHSL 330
Query: 62 ---------NLCQVVIDSGSVDNIASKKLITALKLIADPHPNAFKANWITKKGETTIKEI 121
+C V+IDSGS +N ++KL+ +L L DPHP+ +K W+ K+GET I EI
Sbjct: 331 FKTRCTISGKVCDVIIDSGSSENFVARKLVASLNLKIDPHPDPYKIGWVKKEGETLINEI 390
Query: 122 CTIPLSIGNLYEDQLVCDVLEMDVCLLLLGLPWK------YYNNVTHNGRENTY------ 175
CTIPLSI N Y+DQ+VCDV+EMDVC LLL PW+ + G
Sbjct: 391 CTIPLSIVNSYKDQIVCDVIEMDVCHLLLDRPWEQDLLGLVVAEKSQGGNSEIVEPRLKE 450
BLAST of CsaV3_4G029910 vs. ExPASy TrEMBL
Match:
A0A5D3D7P3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1274G00330 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 2.3e-32
Identity = 73/162 (45.06%), Postives = 99/162 (61.11%), Query Frame = 0
Query: 9 LQETNNEEESVDNTYRDEPEFLEPDEGDQLSCVLRHVLITPKTE---------------- 68
L+E + E + E E LEP++G++LSCVL+ VLITPK++
Sbjct: 27 LEEDEDYVEEQEEDLSQEEEVLEPNDGERLSCVLQRVLITPKSDTSHQQRHSLFKTQCTI 86
Query: 69 --NLCQVVIDSGSVDNIASKKLITALKLIADPHPNAFKANWITKKGETTIKEICTIPLSI 128
+C V+IDSG+ +N SKKL+ LKL +PH +K WI K G+ I E+C++ LSI
Sbjct: 87 QGKVCSVIIDSGNSENFVSKKLVAVLKLKTEPHSCPYKIGWIKKGGDAYINEVCSVSLSI 146
Query: 129 GNLYEDQLVCDVLEMDVCLLLLGLPWKYYNNVTHNGRENTYE 153
G Y+DQ+ CDVL+MDVC +LLG PW+Y H GRENTYE
Sbjct: 147 GGTYKDQIGCDVLDMDVCHILLGRPWQYDIQAIHKGRENTYE 188
BLAST of CsaV3_4G029910 vs. ExPASy TrEMBL
Match:
A0A5A7U5B9 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00240 PE=4 SV=1)
HSP 1 Score: 144.4 bits (363), Expect = 4.4e-31
Identity = 71/162 (43.83%), Postives = 98/162 (60.49%), Query Frame = 0
Query: 9 LQETNNEEESVDNTYRDEPEFLEPDEGDQLSCVLRHVLITPKTE---------------- 68
L+E + E + E E LEP++G++LSCVL+ LITPK++
Sbjct: 198 LEEDEDYVEEQEEDLSQEEEVLEPNDGERLSCVLQRFLITPKSDTSHQQRHSLFKTQCTI 257
Query: 69 --NLCQVVIDSGSVDNIASKKLITALKLIADPHPNAFKANWITKKGETTIKEICTIPLSI 128
+C V+ID+ + +N SKKL+ ALKL +PH +K WI K G+ I E+C++ LSI
Sbjct: 258 QGKVCSVIIDNDNSENFVSKKLVAALKLKTEPHSCPYKIGWIKKGGDAYINEVCSVSLSI 317
Query: 129 GNLYEDQLVCDVLEMDVCLLLLGLPWKYYNNVTHNGRENTYE 153
G Y+DQ+ CDVL+MDVC +LLG PW+Y H GRENTYE
Sbjct: 318 GGTYKDQIGCDVLDMDVCHILLGRPWQYDIQAIHKGRENTYE 359
BLAST of CsaV3_4G029910 vs. TAIR 10
Match:
AT4G13320.1 (unknown protein; Has 68 Blast hits to 67 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 60.1 bits (144), Expect = 2.1e-09
Identity = 39/123 (31.71%), Postives = 65/123 (52.85%), Query Frame = 0
Query: 31 EPDEGDQLSCVLRHVLITPKTENLCQVVIDSGSVDNIASKKLITALKL-IADPHPNAFKA 90
+PD + CV+ + C++V+ G +NI SK L+ LKL +P+
Sbjct: 94 KPDFVFRTQCVI--------NDEACRLVLYGG--NNIISKGLVKQLKLKTLKKYPSV--R 153
Query: 91 NWITKKGETTIKEICTIPLSIGNLYEDQLVCDVLEM--DVCLLLLGLPWKYYNNVTHNGR 150
T++ + +E C +P+SIG+ Y+D++ C V+ M + LL G PW Y THNGR
Sbjct: 154 VMATRREDKVAEETCRVPVSIGDFYKDKVTCYVVNMEEEEDQLLFGGPWLYRVQATHNGR 204
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8649693.1 | 1.0e-95 | 100.00 | hypothetical protein Csa_011978 [Cucumis sativus] | [more] |
XP_031741035.1 | 2.9e-37 | 47.02 | uncharacterized protein LOC116403692 [Cucumis sativus] | [more] |
XP_011648447.2 | 4.9e-37 | 39.21 | uncharacterized protein LOC105434464 [Cucumis sativus] | [more] |
KAA0054966.1 | 3.2e-36 | 48.52 | transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK2... | [more] |
XP_031744062.1 | 3.5e-35 | 45.24 | uncharacterized protein LOC116404773 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DGR0 | 1.5e-36 | 48.52 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... | [more] |
A0A5A7U0I8 | 1.0e-32 | 46.20 | Zf-CCHC domain-containing protein/Asp_protease_2 domain-containing protein OS=Cu... | [more] |
A0A5A7V4G7 | 1.4e-32 | 40.38 | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... | [more] |
A0A5D3D7P3 | 2.3e-32 | 45.06 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U5B9 | 4.4e-31 | 43.83 | CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
Match Name | E-value | Identity | Description | |
AT4G13320.1 | 2.1e-09 | 31.71 | unknown protein; Has 68 Blast hits to 67 proteins in 12 species: Archae - 0; Bac... | [more] |