CsaV3_4G029660 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G029660
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	sigma factor binding protein 2, chloroplastic
Location	chr4: 19237966 .. 19240732 (+)
RNA-Seq Expression	CsaV3_4G029660
Synteny	CsaV3_4G029660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATATCTTGCTTCTCATACGCTCCTTGTCGGCGCTTGGCTTCCTCTCTCCCAATTAAATTCTTGTCGGTTTCTTCCCTCTCCTAATCCCTATATTTTCCCTCGCTCTCTCTCCTTTTTCCCCTAAAAACCCTTTTTTCCCCTTCCGAAATGGACGCTGGCACCGCCACCGGAAGCGACCACCGAACTCTCGACGCCGTTTACCGGCGTAAACCCACCAAGAAAACAAAACAACCCAAGAACAGATTGAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGGATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAATTCCCCCCCTCCGCCGTATGCGACGGCGCCGCCTCCACCGACCAACTCTACAATACGATATCCAGTGGCGGTGAGGACGACGGTGCTACTAATCTTATTGTGAATAGTAACAACTCTTCACTTGTTGACGAGGTGCCGGCGGAGGACGACATTCTTGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTTCTCCGGTAATTGGAAATTTCTCGGGGTTGCTTCCGGCTCCCGTGGCGGCGGTTGTCTATGAATCTAATGCAAGGTGAAAATATTTATTGATATTATAATGTGTGAAAGATCCTTGATCTCTTTAATTTTATCTTCCATTTTTCTATAAGCTTTTTTAATGAATATATATATATAATTGTCTATTAATTGGGGAGTTAATTGTTAACTTGTGAAAAAAATTTCAAGTTATCAAATTTATGAACACATCTATATCATAATAAAAAGATGTTTTCATAAATTAAAAGAAATTTGTGGATATTTTAGTTTATATGTTATATCTCATTATTTTGAGTAGTGTTTTTCTTAATATTTGATTGCGATTTTCTGTCACATTTTTATATATGAAGATATGTTCATTAATTATTTATAACATGTCATACATTTTACTTTAAGAAAAGAACAATAACATGGTGCATCTAGAGTGCACCAATTTTTGTACCCTTACTTCATTCCATACCAAAATTAAAATTACAAAAAAGAAACAAAAAGCAAGAAGAGTTGGTCGGTCTACAAATTATAATTGCAAAATTAGATGAGATTAACAAAACTGAGTGTCACACAAAGAAAATATGAAGTAAATTAAAGTTTGTAGGATATGTTGGAGTGCAATTTTTTAAATGGTTAAAATCAATCAAAATCACCTTAAAATATACTTTTATTCATTTAAACTATTTTCACGTTTAGATTCAATTTTCATATCGTCCAATTCAATTTTGTTTCTAAGGATTGAAAACACTTAAAAATAATTGTAATGCTTCATGAATTACTTTCAAACATGTTTTTAAGGGTGTTTCACTGAATATAAATATAGGTTTTTATGAGTATGCAGTGTATATATATATTGTTTTTCTATTATTATTGCTTGTTTGGATGGAGGGAATTGAATTTTGATTAGCTGGTATCTTCTCACACCTTCTTTTAAAGATGAGAAAGGATATGGGACAAAATAGAGAAATAATATGGACCCAAACATCAACTTTTTTCTTGTTAGGGTAATCTATCACAACAACTTGGGGAAAGGGTTGAAATGAAATAATGGAACTGGCTGAGCCATCAAATATATGATAACTCATAACCTCAGGGCCAAACACCCTAAAGACCCATAAAAGGGGTCAATGTAATAAACTTCCGTATTTATGTGATAAAGAATCTTAAATTGTTAGATAGAAATAAAATACAAATGATTATTCAGTACATACCCTCATGCTAATCTTTAAGCTTTTTAAAAAATTGTATACAATATAATAAGTTCATATAGAAAAAAATAAACAGAAAAACATACATAATAGAATGTATAAAGAATTACTTTGTTTGTTCACAGTGTGTTAGTTGAATAGAGGGAGAAAGCTTTCATTATTAAAAAAACATATTATTTTTTAGATTAAAGAGGCATCAGTAAAGTTAGCCAAAATTGTAGATACCAAAATAGCATAAAAACAAGTCTAATTTAGGCTTTGAGGGAATTACCCATGAACCACCACAGGGAGTGTGTGTTTCCCTAAACCCTATCTTATTAACCAGGTCAATGAAATCTCATATTTGGTTGTTAGGAGAACTAGATAACAGAGTGGAAAACTTGGATTACTATATGCATCCACTCATGTGTACTTCATTGTAGTGTACACACACACACACATATATATAAAAGATCCATGCATATATATATATATATTATCATTTGCATCCAAAAATTTGTATGCTTTGGAAGAAATTTGTATAGTTTGGAAGAGATTTTGATTGATTCAAAAGAAGAACCTACTTCAATACTGATATGCTCCTTAGGCACAACCCTGCATAAAATAGAAATCACACACTTAGGAAAAAGGGGGATAATTAGTTAGACCAGTCGGTGTTGTCCTAAAATTGATTGCAAAATAAAAGGGAAAATCAGTCACATTACAGTTACCTTCTAGGAGGCCCATTTGATATTTAAATTATAATTGCTCAGCAACAGTCAAGCACAAGTGGAAAATGTTGGAGTAAAGTAGAAAAACTTGAGTAGAGCCGAATATAAATTTCGGCTAGAGCTTTAATCTCGTCTAGTAAGAGAAATAGTTATGAATCTGTAGACCATCTTGTAGTGAAGGGAAGATCCCAATTGGTAGAGAAAAACCCATATATAACCTTTGGGGTTATCGTAAAAAGGAGTAGAACAAGGA

mRNA sequence

ATGGACGCTGGCACCGCCACCGGAAGCGACCACCGAACTCTCGACGCCGTTTACCGGCGTAAACCCACCAAGAAAACAAAACAACCCAAGAACAGATTGAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGGATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAATTCCCCCCCTCCGCCGTATGCGACGGCGCCGCCTCCACCGACCAACTCTACAATACGATATCCAGTGGCGGTGAGGACGACGGTGCTACTAATCTTATTGTGAATAGTAACAACTCTTCACTTGTTGACGAGGTGCCGGCGGAGGACGACATTCTTGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTTCTCCGGTAATTGGAAATTTCTCGGGGTTGCTTCCGGCTCCCGTGGCGGCGGTTGTCTATGAATCTAATGCAAGGGTAATCTATCACAACAACTTGGGGAAAGGGTTGAAATGA

Coding sequence (CDS)

ATGGACGCTGGCACCGCCACCGGAAGCGACCACCGAACTCTCGACGCCGTTTACCGGCGTAAACCCACCAAGAAAACAAAACAACCCAAGAACAGATTGAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGGATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAATTCCCCCCCTCCGCCGTATGCGACGGCGCCGCCTCCACCGACCAACTCTACAATACGATATCCAGTGGCGGTGAGGACGACGGTGCTACTAATCTTATTGTGAATAGTAACAACTCTTCACTTGTTGACGAGGTGCCGGCGGAGGACGACATTCTTGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTTCTCCGGTAATTGGAAATTTCTCGGGGTTGCTTCCGGCTCCCGTGGCGGCGGTTGTCTATGAATCTAATGCAAGGGTAATCTATCACAACAACTTGGGGAAAGGGTTGAAATGA

Protein sequence

MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNARVIYHNNLGKGLK*

Homology

[Close]

BLAST of CsaV3_4G029660 vs. NCBI nr
Match: KAE8649682.1 (hypothetical protein Csa_012221 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 4.2e-92
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60
           MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120
           ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120

Query: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNARVIYHNNLGKGLK 177
           AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNARVIYHNNLGKGLK
Sbjct: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNARVIYHNNLGKGLK 176

[Close]

BLAST of CsaV3_4G029660 vs. NCBI nr
Match: XP_011653858.1 (sigma factor binding protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 2.4e-84
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60
           MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120
           ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120

Query: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 165
           AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]

BLAST of CsaV3_4G029660 vs. NCBI nr
Match: XP_008455708.1 (PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 4.8e-72
Identity = 142/164 (86.59%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60
           MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120
           ELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+DDGA+NLIVNSNN SLVD+VP
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 139

Query: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 165
           AEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Sbjct: 140 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 183

[Close]

BLAST of CsaV3_4G029660 vs. NCBI nr
Match: KAA0025974.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 281.6 bits (719), Expect = 4.8e-72
Identity = 142/164 (86.59%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60
           MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120
           ELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+DDGA+NLIVNSNN SLVD+VP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 165
           AEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 164

[Close]

BLAST of CsaV3_4G029660 vs. NCBI nr
Match: TYK04210.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 280.4 bits (716), Expect = 1.1e-71
Identity = 142/164 (86.59%), Postives = 150/164 (91.46%), Query Frame = 0


Query: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60
           MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120
           ELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+DDGA+NLIVNSNN SLVD+VP
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 165
           AEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164

[Close]

BLAST of CsaV3_4G029660 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-07
Identity = 40/76 (52.63%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 5  TATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTG 64
          T T  D +    V R+ P +K K       KPIKV YISNPM+VQT AS F  LVQELTG
Sbjct: 10 TTTSLDKKKPSPVSRKSPKQKKKTTST--NKPIKVRYISNPMRVQTCASKFRELVQELTG 69

Query: 65 QDA-DF-PDPSKFPPS 79
          QDA D  P+P   P S
Sbjct: 70 QDAVDLQPEPIYSPSS 83

[Close]

BLAST of CsaV3_4G029660 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.8e-05
Identity = 38/117 (32.48%), Postives = 54/117 (46.15%), Query Frame = 0


Query: 25  KTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGA 84
           K K+      KPIKV YISNPM+V+T  S F  LVQELTGQDA     +  PPS      
Sbjct: 25  KQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDA-----ADLPPSPTT--- 84

Query: 85  ASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSP 142
                              T + ++    S ++  P + ++ G +Y   D+ +F +P
Sbjct: 85  ------------------FTAVDLHRPCESEMNLEPLDGEVRGEYYSPLDEEVFNAP 115

[Close]

BLAST of CsaV3_4G029660 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.2e-84
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60
           MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120
           ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120

Query: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 165
           AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]

BLAST of CsaV3_4G029660 vs. ExPASy TrEMBL
Match: A0A5A7SJV9 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002890 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.3e-72
Identity = 142/164 (86.59%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60
           MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120
           ELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+DDGA+NLIVNSNN SLVD+VP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 165
           AEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 164

[Close]

BLAST of CsaV3_4G029660 vs. ExPASy TrEMBL
Match: A0A1S3C276 (sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495816 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.3e-72
Identity = 142/164 (86.59%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60
           MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120
           ELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+DDGA+NLIVNSNN SLVD+VP
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 139

Query: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 165
           AEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Sbjct: 140 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 183

[Close]

BLAST of CsaV3_4G029660 vs. ExPASy TrEMBL
Match: A0A5D3BYM2 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00110 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 5.2e-72
Identity = 142/164 (86.59%), Postives = 150/164 (91.46%), Query Frame = 0


Query: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60
           MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120
           ELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+DDGA+NLIVNSNN SLVD+VP
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 165
           AEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164

[Close]

BLAST of CsaV3_4G029660 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.7e-46
Identity = 111/166 (66.87%), Postives = 124/166 (74.70%), Query Frame = 0


Query: 3   AGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQEL 62
           AGT TG+ HR LD V+RRKPTKKTKQP     KPIKVVYISNPMKVQ SASGFMALVQ+L
Sbjct: 5   AGTGTGNSHRLLDGVHRRKPTKKTKQPNK--NKPIKVVYISNPMKVQISASGFMALVQQL 64

Query: 63  TGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVPAE 122
           TGQDADFPDPS FPP+AV D AA  D ++NT +           ++N+NN SL  E+P E
Sbjct: 65  TGQDADFPDPSTFPPAAVRDAAAFPD-IHNTTADAN--------LMNNNNPSLTVEIPME 124

Query: 123 DD-ILGSFYDDFDDLIFPSPVIGNFSGLLPAPVA-AVVYESNARVI 167
           DD  LGSFYDD DDLIFP PVIGN+  LLPA  A AV+YES ARVI
Sbjct: 125 DDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYARVI 159

[Close]

BLAST of CsaV3_4G029660 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 58.2 bits (139), Expect = 8.0e-09
Identity = 40/76 (52.63%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 5  TATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTG 64
          T T  D +    V R+ P +K K       KPIKV YISNPM+VQT AS F  LVQELTG
Sbjct: 10 TTTSLDKKKPSPVSRKSPKQKKKTTST--NKPIKVRYISNPMRVQTCASKFRELVQELTG 69

Query: 65 QDA-DF-PDPSKFPPS 79
          QDA D  P+P   P S
Sbjct: 70 QDAVDLQPEPIYSPSS 83

[Close]

BLAST of CsaV3_4G029660 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-06
Identity = 38/117 (32.48%), Postives = 54/117 (46.15%), Query Frame = 0


Query: 25  KTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGA 84
           K K+      KPIKV YISNPM+V+T  S F  LVQELTGQDA     +  PPS      
Sbjct: 25  KQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDA-----ADLPPSPTT--- 84

Query: 85  ASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSP 142
                              T + ++    S ++  P + ++ G +Y   D+ +F +P
Sbjct: 85  ------------------FTAVDLHRPCESEMNLEPLDGEVRGEYYSPLDEEVFNAP 115

The following BLAST results are available for this feature:

BLAST of CsaV3_4G029660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649682.1	4.2e-92	100.00	hypothetical protein Csa_012221 [Cucumis sativus]	[more]
XP_011653858.1	2.4e-84	100.00	sigma factor binding protein 2, chloroplastic [Cucumis sativus]	[more]
XP_008455708.1	4.8e-72	86.59	PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]	[more]
KAA0025974.1	4.8e-72	86.59	sigma factor binding protein 2 [Cucumis melo var. makuwa]	[more]
TYK04210.1	1.1e-71	86.59	sigma factor binding protein 2 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_4G029660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	1.1e-07	52.63	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	1.8e-05	32.48	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CsaV3_4G029660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3J8	1.2e-84	100.00	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=...	[more]
A0A5A7SJV9	2.3e-72	86.59	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3C276	2.3e-72	86.59	sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5D3BYM2	5.2e-72	86.59	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1EY87	3.7e-46	66.87	sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of CsaV3_4G029660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	8.0e-09	52.63	sigma factor binding protein 1	[more]
AT2G41180.1	1.3e-06	32.48	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 42..67 e-value: 6.8E-12 score: 44.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 16..159
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 16..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G029660.1	CsaV3_4G029660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity