CsaV3_4G029020 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G029020
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 18543238 .. 18544637 (+)
RNA-Seq ExpressionCsaV3_4G029020
SyntenyCsaV3_4G029020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCTTTCATAATATTGAAATTATGCTTGAAAACATATAAGCTTTCTTAGAAATTCCTTTTGAAACACTTTCTTATTTGGAATCATTTTTCAAAATAGTAAAGAGAATCACAAGGAAGATTTTAACTTGAAAGCATTTAAAAAAATCACTCACAGAACTTAAAAAAAAAAACACTCACAAACTTTACTAAAGAAGTCATTCTTCTTCTTCTTGCGAAGTTAAATCAACAACACTTCAACACTTTAATTTTCTCTTTAATAATCCCAAACAAATTACTGTGGTCCTCTAGTTATTGAGCTCTTAAACCAGCTTAGTCATGCTTAAACTCTTCTCAGATTGCCAGCTCCTACTTTTTAATGGAGCACATGTAAACTTAAGATGTGTCCTTAATCATGCTTAGCTTGAACTCCACACGTGGCCCATTAATCACACGTAGGAAATTCCTCCGAACTTTCCTTACTTCTTCTCGCCAAACTTCATTTCGTGAAGAACCTAACTCGTCCAACCTTTCTCGCGAAAATCCTTATCGTGTAGCTATACTTTTACTTCAAGAAATCTTCCTCGCAAACTAACCAACCTTTCCTCGTAGACTTCTTAAGACAACTTCTTAGCTCACAACCTTAAATTTCCTATTTTCCTTGTGAAATCCTTCTTTGCGAAATACTTGATTCTTCCTGCGAAGACCATTCTAAAACACTAATTCTGAACACTTAGCCAAACCTTCCACTTCTTAACTTAAATTTTAGCTACGGGTCTTACATGTGGTGTGTGGAGTGTTGGGTGTTATGGAATTATCAGAATTCTTGTAGGAAGGGTGGGTGTTACATCAACCCATTGCTTCCTTTTTTATGTGGATTCCAAGGTTTTTGGGTGTCGAGTTTGTTGACCAGTATCATGTTTTTGTTTATGTTGTTTGTTTGGAGTGTCATCAAGTGTCAGGTGTTGGCAACATGATTATTGATGGATATGCTTCATTGGTGGTTGCGATTGCTCTCCAAGTTCCTATTCTTTATACTCCGTTACTTGCAGAAGCCTGTGCTTTATGTGAAAAGGAATGCATTTTGCTCACCAACTTCTATTTCCCTTGGTCACTTTTGGTTTGGATTGTCTTGTTTTCCTTCATCTTGTTCAACGACTATCCTATTCTAATGGGGAAGTGAGCATTTGGGTTGATGAGATTTGCAAGGCCTGGATGATTGCTCACTTCTAAAGTTGTCCATGTTCCTCATGTTGGAGATTCTACTACTCATTGCTTGGCTAAGTAGGGTTCTTCCTTGCCACCTATTTCTTGGTTTTCATCTTTTTCTTCTTAGCTTTTGAAAGTAGTTCGATTAAAGAGGCATTTTAAAAAATAGCGAAATTTTAGAAATATTTATAAAATATCGCAAAATCTATCCAA

mRNA sequence

ATGTGGATTCCAAGGTTTTTGGGTGTCGAGTTTGTTGACCAGTATCATGTTTTTGTTTATGTTGTTTGTTTGGAGTGTCATCAAGTGTCAGGTGTTGGCAACATGATTATTGATGGATATGCTTCATTGGTGGTTGCGATTGCTCTCCAAGTTCCTATTCTTTATACTCCGTTACTTGCAGAAGCCTGTGCTTTATGTGAAAAGGAATGCATTTTGCTCACCAACTTCTATTTCCCTTGGTCACTTTTGGTTTGGATTGTCTTGTTTTCCTTCATCTTGTTCAACGACTATCCTATTCTAATGGGGAAGTGA

Coding sequence (CDS)

ATGTGGATTCCAAGGTTTTTGGGTGTCGAGTTTGTTGACCAGTATCATGTTTTTGTTTATGTTGTTTGTTTGGAGTGTCATCAAGTGTCAGGTGTTGGCAACATGATTATTGATGGATATGCTTCATTGGTGGTTGCGATTGCTCTCCAAGTTCCTATTCTTTATACTCCGTTACTTGCAGAAGCCTGTGCTTTATGTGAAAAGGAATGCATTTTGCTCACCAACTTCTATTTCCCTTGGTCACTTTTGGTTTGGATTGTCTTGTTTTCCTTCATCTTGTTCAACGACTATCCTATTCTAATGGGGAAGTGA

Protein sequence

MWIPRFLGVEFVDQYHVFVYVVCLECHQVSGVGNMIIDGYASLVVAIALQVPILYTPLLAEACALCEKECILLTNFYFPWSLLVWIVLFSFILFNDYPILMGK*
Homology
[Close]
BLAST of CsaV3_4G029020 vs. NCBI nr
Match: KGN54650.1 (hypothetical protein Csa_012899 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 8.0e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MWIPRFLGVEFVDQYHVFVYVVCLECHQVSGVGNMIIDGYASLVVAIALQVPILYTPLLA 60
           MWIPRFLGVEFVDQYHVFVYVVCLECHQVSGVGNMIIDGYASLVVAIALQVPILYTPLLA
Sbjct: 1   MWIPRFLGVEFVDQYHVFVYVVCLECHQVSGVGNMIIDGYASLVVAIALQVPILYTPLLA 60

Query: 61  EACALCEKECILLTNFYFPWSLLVWIVLFSFILFNDYPILMGK 104
           EACALCEKECILLTNFYFPWSLLVWIVLFSFILFNDYPILMGK
Sbjct: 61  EACALCEKECILLTNFYFPWSLLVWIVLFSFILFNDYPILMGK 103

[Close]
BLAST of CsaV3_4G029020 vs. ExPASy TrEMBL
Match: A0A0A0KYC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G416460 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.9e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MWIPRFLGVEFVDQYHVFVYVVCLECHQVSGVGNMIIDGYASLVVAIALQVPILYTPLLA 60
           MWIPRFLGVEFVDQYHVFVYVVCLECHQVSGVGNMIIDGYASLVVAIALQVPILYTPLLA
Sbjct: 1   MWIPRFLGVEFVDQYHVFVYVVCLECHQVSGVGNMIIDGYASLVVAIALQVPILYTPLLA 60

Query: 61  EACALCEKECILLTNFYFPWSLLVWIVLFSFILFNDYPILMGK 104
           EACALCEKECILLTNFYFPWSLLVWIVLFSFILFNDYPILMGK
Sbjct: 61  EACALCEKECILLTNFYFPWSLLVWIVLFSFILFNDYPILMGK 103

The following BLAST results are available for this feature:
BLAST of CsaV3_4G029020 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54650.18.0e-51100.00hypothetical protein Csa_012899 [Cucumis sativus][more]
BLAST of CsaV3_4G029020 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G029020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYC13.9e-51100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G416460 PE=4 SV=1[more]
BLAST of CsaV3_4G029020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G029020.1CsaV3_4G029020.1mRNA