CsaV3_4G027670 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G027670
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 16964778 .. 16964928 (+)
RNA-Seq ExpressionCsaV3_4G027670
SyntenyCsaV3_4G027670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAAAGCAAGCAATCATCAAATTTGGTGGAGTTGTGATATCGCTGATTTAATCATTGAACATGAGCTTGAACTTGGCAGCCATGCAGAAACATACTATTCTTGGGTTTCTATTTCCCTCTTAGGAAAAGTTGTGTTGCGTAATTTGG

mRNA sequence

ATGCAAAAAGCAAGCAATCATCAAATTTGGTGGAGTTGTGATATCGCTGATTTAATCATTGAACATGAGCTTGAACTTGGCAGCCATGCAGAAACATACTATTCTTGGGTTTCTATTTCCCTCTTAGGAAAAGTTGTGTTGCGTAATTTGG

Coding sequence (CDS)

ATGCAAAAAGCAAGCAATCATCAAATTTGGTGGAGTTGTGATATCGCTGATTTAATCATTGAACATGAGCTTGAACTTGGCAGCCATGCAGAAACATACTATTCTTGGGTTTCTATTTCCCTCTTAGGAAAAGTTGTGTTGCGTAATTTGG

Protein sequence

MQKASNHQIWWSCDIADLIIEHELELGSHAETYYSWVSISLLGKVVLRNLX
Homology
[Close]
BLAST of CsaV3_4G027670 vs. NCBI nr
Match: KAE8649606.1 (hypothetical protein Csa_012936, partial [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 9.4e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MQKASNHQIWWSCDIADLIIEHELELGSHAETYYSWVSISLLGKVVLRNL 51
          MQKASNHQIWWSCDIADLIIEHELELGSHAETYYSWVSISLLGKVVLRNL
Sbjct: 1  MQKASNHQIWWSCDIADLIIEHELELGSHAETYYSWVSISLLGKVVLRNL 50

[Close]
BLAST of CsaV3_4G027670 vs. NCBI nr
Match: KAA0067927.1 (hypothetical protein E6C27_scaffold138G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 1   MQKASNHQIWWSCDIADLIIEHELELGSHAETYYSWVSISLLGKVVLRNL 51
           MQKASNHQ+ W CDIADLIIE+ELELGSHAET YSWVS+SLLGK+VL NL
Sbjct: 412 MQKASNHQVGWGCDIADLIIEYELELGSHAETDYSWVSLSLLGKIVLPNL 461

[Close]
BLAST of CsaV3_4G027670 vs. NCBI nr
Match: TYK04290.1 (hypothetical protein E5676_scaffold527G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 1   MQKASNHQIWWSCDIADLIIEHELELGSHAETYYSWVSISLLGKVVLRNL 51
           MQKASNHQ+ W CDIADLIIE+ELELGSHAET YSWV +SLLGK+VL NL
Sbjct: 412 MQKASNHQMGWGCDIADLIIEYELELGSHAETDYSWVYLSLLGKIVLPNL 461

[Close]
BLAST of CsaV3_4G027670 vs. ExPASy TrEMBL
Match: A0A5A7VL27 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00960 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.7e-16
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 1   MQKASNHQIWWSCDIADLIIEHELELGSHAETYYSWVSISLLGKVVLRNL 51
           MQKASNHQ+ W CDIADLIIE+ELELGSHAET YSWVS+SLLGK+VL NL
Sbjct: 412 MQKASNHQVGWGCDIADLIIEYELELGSHAETDYSWVSLSLLGKIVLPNL 461

[Close]
BLAST of CsaV3_4G027670 vs. ExPASy TrEMBL
Match: A0A5D3BYU6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00160 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.9e-15
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 1   MQKASNHQIWWSCDIADLIIEHELELGSHAETYYSWVSISLLGKVVLRNL 51
           MQKASNHQ+ W CDIADLIIE+ELELGSHAET YSWV +SLLGK+VL NL
Sbjct: 412 MQKASNHQMGWGCDIADLIIEYELELGSHAETDYSWVYLSLLGKIVLPNL 461

The following BLAST results are available for this feature:
BLAST of CsaV3_4G027670 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649606.19.4e-21100.00hypothetical protein Csa_012936, partial [Cucumis sativus][more]
KAA0067927.11.2e-1584.00hypothetical protein E6C27_scaffold138G00960 [Cucumis melo var. makuwa][more]
TYK04290.11.0e-1482.00hypothetical protein E5676_scaffold527G00160 [Cucumis melo var. makuwa][more]
BLAST of CsaV3_4G027670 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G027670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VL275.7e-1684.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BYU64.9e-1582.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsaV3_4G027670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G027670.1CsaV3_4G027670.1mRNA